Wall clock time and date at job start Mon Mar 30 2020 07:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.52998 * 109.47241 * 119.99844 * 2 1 3 5 5 C 1.52997 * 109.47430 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47242 * 300.00385 * 5 4 2 7 7 C 1.52999 * 109.47034 * 299.99538 * 6 5 4 8 8 C 1.53005 * 109.47231 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47223 * 59.99488 * 6 5 4 10 10 C 1.52993 * 109.47231 * 240.00107 * 2 1 3 11 11 H 1.09002 * 109.47015 * 299.99917 * 10 2 1 12 12 N 1.46898 * 109.47262 * 59.99760 * 10 2 1 13 13 C 1.46904 * 111.00074 * 205.00166 * 12 10 2 14 14 C 1.53000 * 109.46772 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46873 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46700 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00803 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 H 1.08990 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47100 * 300.00060 * 1 2 3 27 27 H 1.08995 * 109.46805 * 59.99625 * 1 2 3 28 28 H 1.08997 * 109.47275 * 59.99744 * 4 2 1 29 29 H 1.09002 * 109.47152 * 300.00064 * 4 2 1 30 30 H 1.08997 * 109.47358 * 179.97438 * 5 4 2 31 31 H 1.09002 * 109.46853 * 60.00163 * 5 4 2 32 32 H 1.09002 * 109.47236 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47726 * 300.00175 * 7 6 5 34 34 H 1.09006 * 109.46954 * 60.00237 * 7 6 5 35 35 H 1.09002 * 109.47054 * 299.99893 * 8 6 5 36 36 H 1.08995 * 109.46805 * 60.00269 * 8 6 5 37 37 H 1.09002 * 109.47100 * 179.97438 * 8 6 5 38 38 H 1.09004 * 109.47225 * 179.97438 * 9 6 5 39 39 H 1.09002 * 109.46969 * 60.00163 * 9 6 5 40 40 H 1.00901 * 110.99793 * 328.95727 * 12 10 2 41 41 H 1.08994 * 109.47140 * 60.00004 * 13 12 10 42 42 H 1.08997 * 109.46845 * 300.00295 * 13 12 10 43 43 H 1.08994 * 109.47548 * 59.99931 * 14 13 12 44 44 H 1.09003 * 109.47183 * 299.99245 * 14 13 12 45 45 H 1.09004 * 109.47180 * 59.99720 * 15 14 13 46 46 H 1.08997 * 109.46702 * 299.99891 * 15 14 13 47 47 H 1.09004 * 109.47139 * 60.00071 * 16 15 14 48 48 H 1.08997 * 109.47675 * 299.99671 * 16 15 14 49 49 H 0.96998 * 120.00124 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4433 -0.0002 7 6 3.5691 -2.8857 0.0001 8 6 5.6096 -1.4434 -0.0008 9 6 3.5695 -0.7221 -1.2495 10 6 2.0401 -0.7212 -1.2492 11 1 1.6767 -1.7489 -1.2492 12 7 1.5504 -0.0287 -2.4486 13 6 1.4876 -0.9439 -3.5961 14 6 0.9750 -0.1880 -4.8236 15 6 0.9090 -1.1413 -6.0186 16 6 0.3958 -0.3857 -7.2460 17 6 0.3314 -1.3245 -8.4231 18 1 0.6265 -2.3569 -8.3073 19 6 -0.1043 -0.8654 -9.6480 20 7 -0.1610 -1.6848 -10.6752 21 14 -0.6141 0.9205 -9.8487 22 1 0.5661 1.7309 -10.2433 23 1 -1.1555 1.4282 -8.5624 24 1 -1.6583 1.0222 -10.8997 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 -1.7488 1.2493 29 1 1.6767 -0.2074 2.1392 30 1 3.9334 -1.2352 2.1392 31 1 3.9337 0.3058 1.2487 32 1 3.9317 -3.3996 -0.8901 33 1 3.9324 -3.3995 0.8900 34 1 2.4790 -2.8853 0.0003 35 1 5.9729 -0.4157 -0.0013 36 1 5.9732 -1.9570 0.8891 37 1 5.9726 -1.9578 -0.8906 38 1 3.9329 -1.2359 -2.1395 39 1 3.9332 0.3054 -1.2497 40 1 0.6527 0.3993 -2.2779 41 1 0.8113 -1.7674 -3.3674 42 1 2.4830 -1.3376 -3.8016 43 1 1.6516 0.6353 -5.0522 44 1 -0.0204 0.2059 -4.6183 45 1 0.2320 -1.9645 -5.7898 46 1 1.9041 -1.5357 -6.2241 47 1 1.0725 0.4376 -7.4750 48 1 -0.5994 0.0084 -7.0403 49 1 -0.4672 -1.3617 -11.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717485134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:33 Heat of formation + Delta-G solvation = -52.474373 kcal Electronic energy + Delta-G solvation = -21033.137088 eV Core-core repulsion = 18185.824138 eV Total energy + Delta-G solvation = -2847.312950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19240 -36.52736 -34.83278 -33.53489 -32.06989 -29.99535 -29.00302 -27.71664 -27.52673 -24.57314 -24.17945 -22.18030 -21.11737 -20.46837 -19.86882 -18.67671 -16.64310 -16.11007 -15.33350 -15.19041 -14.70649 -14.62326 -14.35810 -14.17142 -13.73593 -13.46631 -13.06160 -12.92594 -12.61168 -12.54967 -12.31853 -12.17150 -11.99994 -11.73966 -11.66438 -11.60908 -11.53810 -11.11129 -10.99302 -10.88877 -10.74715 -10.55905 -10.41320 -10.30820 -10.11148 -9.83301 -9.64085 -9.41210 -9.10984 -8.49335 -8.31794 -6.00139 -3.97540 3.34327 3.41159 3.45938 4.07581 4.38570 4.44873 4.49526 4.66120 4.73194 4.83980 5.00984 5.16468 5.21546 5.27535 5.31229 5.32990 5.34769 5.44776 5.45754 5.49892 5.53727 5.60487 5.65022 5.73919 5.76571 5.78582 5.84507 5.87931 5.88839 5.95730 5.97773 6.09049 6.10567 6.15918 6.22618 6.27789 6.35513 6.44117 6.71675 6.81491 6.96634 7.19690 7.38648 7.47283 7.52066 7.85423 8.59455 9.05310 9.62992 11.13544 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.003108 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.011432 B = 9006.624802 C = 9467.446750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.095 4.095 10 C 0.091 3.909 11 H 0.045 0.955 12 N -0.691 5.691 13 C 0.061 3.939 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.014 4.014 17 C -0.519 4.519 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.265 1.265 24 H -0.289 1.289 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.339 0.661 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 2.303 27.306 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.203 4.203 8 C -0.198 4.198 9 C -0.133 4.133 10 C -0.018 4.018 11 H 0.063 0.937 12 N -0.323 5.323 13 C -0.068 4.068 14 C -0.156 4.156 15 C -0.139 4.139 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.190 1.190 24 H -0.215 1.215 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.159 0.841 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.029 0.971 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.132 2.541 26.938 27.982 hybrid contribution -1.068 0.321 -0.122 1.122 sum 6.064 2.862 26.816 27.642 Atomic orbital electron populations 1.21909 0.95509 1.01808 1.01893 1.21283 0.95168 1.00354 0.94395 0.90488 1.21609 0.95645 1.00744 0.97157 1.21590 0.95365 1.00439 0.97104 1.20551 0.95209 0.95473 0.95365 1.21985 1.01375 0.95424 1.01498 1.21853 0.94639 1.01701 1.01606 1.21560 0.94500 1.00761 0.96513 1.21550 0.95366 0.95892 0.89010 0.93713 1.60562 1.33517 1.33852 1.04410 1.22070 1.00550 0.93669 0.90528 1.21669 1.00463 0.99280 0.94193 1.21413 1.00739 0.97629 0.94129 1.19568 0.95692 0.96151 0.93712 1.21201 1.43731 0.97830 0.92966 0.91149 1.25056 0.95165 0.97567 0.95884 1.69926 1.48126 1.35323 1.01195 0.86754 0.78619 0.85775 0.77990 1.20305 1.19006 1.21478 0.92821 0.92418 0.92313 0.91740 0.92037 0.92194 0.91954 0.92702 0.92990 0.92197 0.92688 0.92891 0.92590 0.91945 0.91410 0.84075 0.95637 0.91259 0.91697 0.92888 0.93110 0.92879 0.97095 0.96803 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.96 37.16 0.33 -0.94 16 2 C -0.09 -0.81 2.39 -90.62 -0.22 -1.03 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -0.86 4.93 -26.73 -0.13 -1.00 16 5 C -0.11 -0.81 4.73 -26.74 -0.13 -0.94 16 6 C -0.07 -0.55 0.77 -154.51 -0.12 -0.67 16 7 C -0.15 -1.22 7.78 37.16 0.29 -0.93 16 8 C -0.14 -1.10 8.47 37.16 0.31 -0.79 16 9 C -0.10 -0.97 4.23 -26.76 -0.11 -1.08 16 10 C 0.09 0.95 1.70 -67.74 -0.11 0.83 16 11 H 0.04 0.50 6.08 -51.93 -0.32 0.18 16 12 N -0.69 -8.43 6.31 -106.76 -0.67 -9.10 16 13 C 0.06 0.85 5.48 -3.82 -0.02 0.83 16 14 C -0.12 -1.95 5.48 -26.73 -0.15 -2.09 16 15 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 21 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.51 6.21 -51.93 -0.32 0.18 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.34 3.91 6.17 -39.29 -0.24 3.67 16 41 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 42 H 0.07 0.99 7.43 -51.93 -0.39 0.61 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 48 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -30.41 361.70 -9.62 -40.04 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.77 Total: -1.97 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -0.73 Total: -24.22 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.10 Total: -36.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.41 -9.62 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.438 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds