Wall clock time and date at job start Mon Mar 30 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.52998 * 109.47241 * 119.99844 * 2 1 3 5 5 C 1.52997 * 109.47430 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47242 * 300.00385 * 5 4 2 7 7 C 1.52999 * 109.47034 * 299.99538 * 6 5 4 8 8 C 1.53005 * 109.47231 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47223 * 59.99488 * 6 5 4 10 10 C 1.52993 * 109.47231 * 240.00107 * 2 1 3 11 11 H 1.09002 * 109.47015 * 299.99917 * 10 2 1 12 12 N 1.46898 * 109.47262 * 59.99760 * 10 2 1 13 13 C 1.46904 * 111.00074 * 205.00166 * 12 10 2 14 14 C 1.53000 * 109.46772 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46873 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46700 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00803 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 H 1.08990 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47100 * 300.00060 * 1 2 3 27 27 H 1.08995 * 109.46805 * 59.99625 * 1 2 3 28 28 H 1.08997 * 109.47275 * 59.99744 * 4 2 1 29 29 H 1.09002 * 109.47152 * 300.00064 * 4 2 1 30 30 H 1.08997 * 109.47358 * 179.97438 * 5 4 2 31 31 H 1.09002 * 109.46853 * 60.00163 * 5 4 2 32 32 H 1.09002 * 109.47236 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47726 * 300.00175 * 7 6 5 34 34 H 1.09006 * 109.46954 * 60.00237 * 7 6 5 35 35 H 1.09002 * 109.47054 * 299.99893 * 8 6 5 36 36 H 1.08995 * 109.46805 * 60.00269 * 8 6 5 37 37 H 1.09002 * 109.47100 * 179.97438 * 8 6 5 38 38 H 1.09004 * 109.47225 * 179.97438 * 9 6 5 39 39 H 1.09002 * 109.46969 * 60.00163 * 9 6 5 40 40 H 1.00901 * 110.99793 * 328.95727 * 12 10 2 41 41 H 1.08994 * 109.47140 * 60.00004 * 13 12 10 42 42 H 1.08997 * 109.46845 * 300.00295 * 13 12 10 43 43 H 1.08994 * 109.47548 * 59.99931 * 14 13 12 44 44 H 1.09003 * 109.47183 * 299.99245 * 14 13 12 45 45 H 1.09004 * 109.47180 * 59.99720 * 15 14 13 46 46 H 1.08997 * 109.46702 * 299.99891 * 15 14 13 47 47 H 1.09004 * 109.47139 * 60.00071 * 16 15 14 48 48 H 1.08997 * 109.47675 * 299.99671 * 16 15 14 49 49 H 0.96998 * 120.00124 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4433 -0.0002 7 6 3.5691 -2.8857 0.0001 8 6 5.6096 -1.4434 -0.0008 9 6 3.5695 -0.7221 -1.2495 10 6 2.0401 -0.7212 -1.2492 11 1 1.6767 -1.7489 -1.2492 12 7 1.5504 -0.0287 -2.4486 13 6 1.4876 -0.9439 -3.5961 14 6 0.9750 -0.1880 -4.8236 15 6 0.9090 -1.1413 -6.0186 16 6 0.3958 -0.3857 -7.2460 17 6 0.3314 -1.3245 -8.4231 18 1 0.6265 -2.3569 -8.3073 19 6 -0.1043 -0.8654 -9.6480 20 7 -0.1610 -1.6848 -10.6752 21 14 -0.6141 0.9205 -9.8487 22 1 0.5661 1.7309 -10.2433 23 1 -1.1555 1.4282 -8.5624 24 1 -1.6583 1.0222 -10.8997 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 -1.7488 1.2493 29 1 1.6767 -0.2074 2.1392 30 1 3.9334 -1.2352 2.1392 31 1 3.9337 0.3058 1.2487 32 1 3.9317 -3.3996 -0.8901 33 1 3.9324 -3.3995 0.8900 34 1 2.4790 -2.8853 0.0003 35 1 5.9729 -0.4157 -0.0013 36 1 5.9732 -1.9570 0.8891 37 1 5.9726 -1.9578 -0.8906 38 1 3.9329 -1.2359 -2.1395 39 1 3.9332 0.3054 -1.2497 40 1 0.6527 0.3993 -2.2779 41 1 0.8113 -1.7674 -3.3674 42 1 2.4830 -1.3376 -3.8016 43 1 1.6516 0.6353 -5.0522 44 1 -0.0204 0.2059 -4.6183 45 1 0.2320 -1.9645 -5.7898 46 1 1.9041 -1.5357 -6.2241 47 1 1.0725 0.4376 -7.4750 48 1 -0.5994 0.0084 -7.0403 49 1 -0.4672 -1.3617 -11.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717485134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:32 Heat of formation + Delta-G solvation = -69.104109 kcal Electronic energy + Delta-G solvation = -21033.858208 eV Core-core repulsion = 18185.824138 eV Total energy + Delta-G solvation = -2848.034070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93153 -37.65022 -36.11153 -34.88995 -33.79935 -31.26544 -29.75162 -29.03015 -28.20682 -26.06647 -24.95529 -23.33392 -22.23338 -21.87318 -21.04804 -19.37558 -18.86242 -17.10495 -16.37911 -16.30996 -15.97220 -15.79358 -15.33165 -15.13318 -14.78371 -14.55230 -14.44190 -14.02735 -13.98682 -13.51270 -13.44821 -13.10007 -12.99367 -12.87041 -12.77738 -12.65765 -12.43792 -12.29560 -12.21416 -11.98095 -11.75885 -11.70217 -11.59631 -11.42970 -11.34126 -11.29194 -11.10894 -10.94418 -10.77004 -10.75354 -9.30322 -8.30395 -6.34649 1.35625 1.37376 1.50092 2.36133 3.04880 3.14467 3.68452 3.75324 3.96179 4.03328 4.11589 4.13421 4.22360 4.34430 4.44636 4.48325 4.54693 4.59449 4.60481 4.63729 4.70247 4.79946 4.83739 4.88279 4.90579 4.95517 4.95706 5.09147 5.10310 5.12323 5.14270 5.17390 5.19402 5.23085 5.25606 5.29178 5.32975 5.43306 5.50956 5.53364 5.56862 5.63864 5.66422 5.68038 6.17487 6.28685 6.54186 6.73599 7.30195 8.86716 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.003108 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.011432 B = 9006.624802 C = 9467.446750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.105 4.105 6 C -0.063 4.063 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.093 4.093 10 C 0.093 3.907 11 H 0.039 0.961 12 N -0.693 5.693 13 C 0.071 3.929 14 C -0.106 4.106 15 C -0.095 4.095 16 C -0.011 4.011 17 C -0.536 4.536 18 H 0.029 0.971 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.246 1.246 24 H -0.283 1.283 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.344 0.656 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 4.130 29.523 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.064 4.064 7 C -0.201 4.201 8 C -0.197 4.197 9 C -0.131 4.131 10 C -0.017 4.017 11 H 0.057 0.943 12 N -0.327 5.327 13 C -0.059 4.059 14 C -0.144 4.144 15 C -0.133 4.133 16 C -0.049 4.049 17 C -0.574 4.574 18 H 0.047 0.953 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.169 1.169 24 H -0.208 1.208 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.165 0.835 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.871 4.364 29.182 30.296 hybrid contribution -0.949 -0.355 -0.832 1.311 sum 5.923 4.010 28.350 29.238 Atomic orbital electron populations 1.21899 0.95001 1.01793 1.02296 1.21241 0.95551 0.99939 0.93982 0.90898 1.21598 0.95608 1.00720 0.96928 1.21574 0.95341 1.00428 0.96882 1.20536 0.95555 0.95345 0.94947 1.21971 1.01162 0.95419 1.01590 1.21844 0.94218 1.01841 1.01803 1.21531 0.94438 1.00287 0.96846 1.21586 0.95373 0.95641 0.89064 0.94307 1.60529 1.33934 1.33585 1.04615 1.21852 1.00020 0.93598 0.90400 1.21490 1.01139 0.98311 0.93411 1.21290 0.99875 0.97928 0.94211 1.19534 0.96273 0.95603 0.93481 1.21573 1.43548 0.97061 0.95197 0.95281 1.26092 0.95086 1.03072 0.95340 1.70081 1.49388 1.37996 1.01996 0.85590 0.78665 0.79110 0.78868 1.19114 1.16917 1.20833 0.93029 0.91174 0.92763 0.91740 0.90753 0.91009 0.91934 0.93690 0.91824 0.92486 0.92587 0.91750 0.93351 0.93711 0.92151 0.83484 0.95610 0.91885 0.91772 0.91993 0.93612 0.93650 0.96469 0.96227 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.96 71.98 0.64 -1.57 16 2 C -0.09 -1.38 2.39 -10.79 -0.03 -1.41 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -1.43 4.93 30.59 0.15 -1.28 16 5 C -0.10 -1.36 4.73 30.59 0.14 -1.21 16 6 C -0.06 -0.98 0.77 -52.18 -0.04 -1.02 16 7 C -0.14 -2.24 7.78 71.98 0.56 -1.68 16 8 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 9 C -0.09 -1.83 4.23 30.58 0.13 -1.71 16 10 C 0.09 1.82 1.70 44.90 0.08 1.90 16 11 H 0.04 0.83 6.08 -2.39 -0.01 0.81 16 12 N -0.69 -16.05 6.31 -491.68 -3.10 -19.15 16 13 C 0.07 1.91 5.48 86.30 0.47 2.39 16 14 C -0.11 -3.33 5.48 30.60 0.17 -3.16 16 15 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 16 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 17 C -0.54 -32.16 9.66 25.60 0.25 -31.91 16 18 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 19 C 0.00 0.02 5.47 84.65 0.46 0.49 16 20 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 21 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.83 6.21 -2.39 -0.01 0.82 16 28 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.92 4.81 -2.38 -0.01 0.90 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.04 1.03 7.45 -2.38 -0.02 1.01 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.34 7.35 6.17 -89.69 -0.55 6.80 16 41 H 0.03 0.70 8.05 -2.39 -0.02 0.68 16 42 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 48 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 49 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -65.75 361.70 3.22 -62.52 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.26 Total: 16.16 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 3.88 Total: -45.69 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.80 Total: -80.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -65.75 3.22 -62.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.580 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds