Wall clock time and date at job start Mon Mar 30 2020 07:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47406 * 2 1 4 4 C 1.53003 * 109.46978 * 239.99752 * 2 1 3 5 5 C 1.52997 * 109.47479 * 299.99782 * 4 2 1 6 6 C 1.53001 * 109.47152 * 300.00458 * 5 4 2 7 7 C 1.53000 * 109.46984 * 299.99585 * 6 5 4 8 8 C 1.53004 * 109.47044 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47458 * 59.99795 * 6 5 4 10 10 C 1.53001 * 109.46984 * 119.99704 * 2 1 3 11 11 H 1.08996 * 109.46937 * 179.97438 * 10 2 1 12 12 N 1.46895 * 109.47101 * 300.00347 * 10 2 1 13 13 C 1.46910 * 110.99703 * 205.00078 * 12 10 2 14 14 C 1.53003 * 109.46824 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46838 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.09000 * 109.47154 * 300.00287 * 1 2 3 26 26 H 1.09002 * 109.47230 * 60.00225 * 1 2 3 27 27 H 1.09007 * 109.47036 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46736 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47561 * 60.00135 * 4 2 1 30 30 H 1.09000 * 109.47423 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47076 * 59.99828 * 5 4 2 32 32 H 1.09001 * 109.46487 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47154 * 300.00008 * 7 6 5 34 34 H 1.08998 * 109.46906 * 60.00362 * 7 6 5 35 35 H 1.08996 * 109.47103 * 299.99713 * 8 6 5 36 36 H 1.09000 * 109.47082 * 59.99999 * 8 6 5 37 37 H 1.09002 * 109.46978 * 179.97438 * 8 6 5 38 38 H 1.08989 * 109.47438 * 179.97438 * 9 6 5 39 39 H 1.08999 * 109.46953 * 59.99629 * 9 6 5 40 40 H 1.00900 * 111.00184 * 81.04814 * 12 10 2 41 41 H 1.08998 * 109.47017 * 60.00119 * 13 12 10 42 42 H 1.09002 * 109.46670 * 299.99530 * 13 12 10 43 43 H 1.08998 * 109.46943 * 60.00420 * 14 13 12 44 44 H 1.08994 * 109.47116 * 300.00031 * 14 13 12 45 45 H 1.09004 * 109.46806 * 60.00265 * 15 14 13 46 46 H 1.09000 * 109.47828 * 300.00570 * 15 14 13 47 47 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 48 48 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 49 49 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 3.5700 -2.8850 0.0001 8 6 1.5295 -4.3274 0.0004 9 6 1.5300 -2.1638 1.2493 10 6 2.0400 -0.7212 1.2493 11 1 3.1299 -0.7216 1.2491 12 7 1.5502 -0.0287 2.4486 13 6 2.4340 -0.2745 3.5962 14 6 1.8929 0.4617 4.8234 15 6 2.8129 0.2052 6.0186 16 6 2.2715 0.9409 7.2460 17 6 3.1781 0.6888 8.4232 18 1 4.0531 0.0664 8.3074 19 6 2.8938 1.2577 9.6466 20 7 1.8284 2.0159 9.7875 21 14 4.0217 0.9514 11.1037 22 1 5.3856 1.4458 10.7865 23 1 3.4988 1.6694 12.2939 24 1 4.0770 -0.5048 11.3895 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 -0.7217 -1.2490 29 1 1.6767 -0.2076 -2.1393 30 1 1.8937 -2.6778 -2.1390 31 1 0.4400 -2.1639 -1.2492 32 1 3.9332 -3.3992 0.8899 33 1 3.9334 -3.3989 -0.8899 34 1 3.9333 -1.8574 0.0001 35 1 0.4396 -4.3270 0.0006 36 1 1.8926 -4.8415 -0.8896 37 1 1.8932 -4.8413 0.8902 38 1 1.8929 -2.6778 2.1393 39 1 0.4400 -2.1638 1.2493 40 1 0.6008 -0.2978 2.6592 41 1 3.4359 0.0887 3.3675 42 1 2.4733 -1.3442 3.8018 43 1 0.8909 0.0989 5.0523 44 1 1.8538 1.5313 4.6175 45 1 3.8151 0.5678 5.7900 46 1 2.8517 -0.8644 6.2245 47 1 1.2694 0.5780 7.4745 48 1 2.2324 2.0106 7.0406 49 1 1.6282 2.4159 10.6483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717485137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:35 Heat of formation + Delta-G solvation = -53.847945 kcal Electronic energy + Delta-G solvation = -21060.423718 eV Core-core repulsion = 18213.051205 eV Total energy + Delta-G solvation = -2847.372513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39067 -36.36754 -34.57812 -33.56297 -32.06636 -29.78144 -28.35968 -27.52401 -27.13653 -25.42577 -24.24968 -22.31232 -21.30299 -20.35276 -19.80059 -17.92495 -16.30278 -15.99796 -15.63107 -15.07640 -14.88286 -14.48941 -14.43656 -14.30556 -13.64025 -13.54844 -12.87693 -12.62529 -12.46569 -12.31259 -12.22190 -12.12867 -12.01563 -11.72379 -11.58916 -11.44822 -11.32383 -11.08102 -10.96719 -10.76365 -10.62470 -10.51999 -10.39475 -10.38380 -10.15779 -10.03858 -9.58596 -9.21086 -8.96904 -8.29988 -8.22184 -5.95031 -3.97199 3.35891 3.39955 3.42621 4.17347 4.40676 4.45383 4.49898 4.66398 4.90387 4.94760 5.08278 5.12684 5.23488 5.29695 5.34197 5.40165 5.40898 5.44783 5.47281 5.57523 5.58442 5.61698 5.71987 5.75502 5.78913 5.84358 5.87198 5.92864 5.95064 5.98154 6.03953 6.17288 6.20155 6.25176 6.30362 6.35577 6.40977 6.56981 6.87826 7.01812 7.13806 7.30554 7.52036 7.74066 7.90740 8.06378 8.49218 9.10192 9.66374 11.16328 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.002921 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.830892 B = 9584.694683 C =10015.502713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.060 4.060 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.139 4.139 10 C 0.091 3.909 11 H 0.077 0.923 12 N -0.685 5.685 13 C 0.060 3.940 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.338 0.662 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -9.332 -24.445 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.146 4.146 6 C -0.061 4.061 7 C -0.203 4.203 8 C -0.199 4.199 9 C -0.178 4.178 10 C -0.019 4.019 11 H 0.095 0.905 12 N -0.314 5.314 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.209 -8.610 -24.456 25.956 hybrid contribution 0.347 -1.109 1.153 1.637 sum -0.863 -9.719 -23.303 25.263 Atomic orbital electron populations 1.21895 0.95498 1.01459 1.01742 1.21055 0.96006 0.99450 0.93221 0.90760 1.21631 1.00752 0.95448 0.97681 1.21627 1.00739 0.95436 0.96821 1.20464 0.95625 0.94828 0.95163 1.21985 0.94754 1.02095 1.01465 1.21875 1.00837 0.95614 1.01593 1.22369 1.01059 0.96977 0.97439 1.21612 0.99422 0.90348 0.90518 0.90487 1.60644 1.05971 1.60849 1.03976 1.22085 0.96719 0.97747 0.90326 1.21631 0.99450 1.00560 0.93681 1.21584 0.97838 1.00055 0.95207 1.19082 0.96159 0.95411 0.90893 1.21267 1.09872 1.29984 0.94785 0.92847 1.25035 0.95357 0.95259 0.98878 1.69963 1.26197 1.32888 1.24544 0.86672 0.81060 0.78304 0.82035 1.20258 1.21299 1.20294 0.91968 0.93314 0.92695 0.91819 0.92087 0.92378 0.91731 0.92825 0.92924 0.91956 0.92823 0.92828 0.92728 0.92126 0.91555 0.84365 0.91494 0.95690 0.92875 0.91714 0.93507 0.93763 0.96777 0.96632 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.23 37.16 0.31 -1.03 16 2 C -0.08 -0.74 2.91 -90.62 -0.26 -1.00 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -0.94 5.18 -26.73 -0.14 -1.08 16 5 C -0.11 -0.83 4.46 -26.73 -0.12 -0.95 16 6 C -0.06 -0.49 0.77 -154.50 -0.12 -0.61 16 7 C -0.15 -1.21 7.78 37.16 0.29 -0.92 16 8 C -0.14 -1.10 8.47 37.16 0.31 -0.78 16 9 C -0.14 -1.33 3.71 -26.73 -0.10 -1.43 16 10 C 0.09 0.95 1.89 -67.71 -0.13 0.82 16 11 H 0.08 0.87 6.08 -51.93 -0.32 0.55 16 12 N -0.69 -8.55 5.77 -106.72 -0.62 -9.16 16 13 C 0.06 0.86 5.48 -3.82 -0.02 0.84 16 14 C -0.12 -2.02 5.47 -26.73 -0.15 -2.16 16 15 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.62 7.21 -51.93 -0.37 0.24 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.47 4.81 -51.92 -0.25 0.22 16 28 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 39 H 0.07 0.63 6.42 -51.93 -0.33 0.30 16 40 H 0.34 4.07 7.73 -39.29 -0.30 3.77 16 41 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 42 H 0.02 0.36 7.44 -51.93 -0.39 -0.03 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -29.77 359.99 -9.85 -39.62 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -9.57 Total: -1.83 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -0.81 Total: -24.26 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.12 Total: -36.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.77 -9.85 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.224 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds