Wall clock time and date at job start Mon Mar 30 2020 07:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47406 * 2 1 4 4 C 1.53003 * 109.46978 * 239.99752 * 2 1 3 5 5 C 1.52997 * 109.47479 * 299.99782 * 4 2 1 6 6 C 1.53001 * 109.47152 * 300.00458 * 5 4 2 7 7 C 1.53000 * 109.46984 * 299.99585 * 6 5 4 8 8 C 1.53004 * 109.47044 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47458 * 59.99795 * 6 5 4 10 10 C 1.53001 * 109.46984 * 119.99704 * 2 1 3 11 11 H 1.08996 * 109.46937 * 179.97438 * 10 2 1 12 12 N 1.46895 * 109.47101 * 300.00347 * 10 2 1 13 13 C 1.46910 * 110.99703 * 205.00078 * 12 10 2 14 14 C 1.53003 * 109.46824 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46838 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.09000 * 109.47154 * 300.00287 * 1 2 3 26 26 H 1.09002 * 109.47230 * 60.00225 * 1 2 3 27 27 H 1.09007 * 109.47036 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46736 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47561 * 60.00135 * 4 2 1 30 30 H 1.09000 * 109.47423 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47076 * 59.99828 * 5 4 2 32 32 H 1.09001 * 109.46487 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47154 * 300.00008 * 7 6 5 34 34 H 1.08998 * 109.46906 * 60.00362 * 7 6 5 35 35 H 1.08996 * 109.47103 * 299.99713 * 8 6 5 36 36 H 1.09000 * 109.47082 * 59.99999 * 8 6 5 37 37 H 1.09002 * 109.46978 * 179.97438 * 8 6 5 38 38 H 1.08989 * 109.47438 * 179.97438 * 9 6 5 39 39 H 1.08999 * 109.46953 * 59.99629 * 9 6 5 40 40 H 1.00900 * 111.00184 * 81.04814 * 12 10 2 41 41 H 1.08998 * 109.47017 * 60.00119 * 13 12 10 42 42 H 1.09002 * 109.46670 * 299.99530 * 13 12 10 43 43 H 1.08998 * 109.46943 * 60.00420 * 14 13 12 44 44 H 1.08994 * 109.47116 * 300.00031 * 14 13 12 45 45 H 1.09004 * 109.46806 * 60.00265 * 15 14 13 46 46 H 1.09000 * 109.47828 * 300.00570 * 15 14 13 47 47 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 48 48 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 49 49 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 3.5700 -2.8850 0.0001 8 6 1.5295 -4.3274 0.0004 9 6 1.5300 -2.1638 1.2493 10 6 2.0400 -0.7212 1.2493 11 1 3.1299 -0.7216 1.2491 12 7 1.5502 -0.0287 2.4486 13 6 2.4340 -0.2745 3.5962 14 6 1.8929 0.4617 4.8234 15 6 2.8129 0.2052 6.0186 16 6 2.2715 0.9409 7.2460 17 6 3.1781 0.6888 8.4232 18 1 4.0531 0.0664 8.3074 19 6 2.8938 1.2577 9.6466 20 7 1.8284 2.0159 9.7875 21 14 4.0217 0.9514 11.1037 22 1 5.3856 1.4458 10.7865 23 1 3.4988 1.6694 12.2939 24 1 4.0770 -0.5048 11.3895 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 -0.7217 -1.2490 29 1 1.6767 -0.2076 -2.1393 30 1 1.8937 -2.6778 -2.1390 31 1 0.4400 -2.1639 -1.2492 32 1 3.9332 -3.3992 0.8899 33 1 3.9334 -3.3989 -0.8899 34 1 3.9333 -1.8574 0.0001 35 1 0.4396 -4.3270 0.0006 36 1 1.8926 -4.8415 -0.8896 37 1 1.8932 -4.8413 0.8902 38 1 1.8929 -2.6778 2.1393 39 1 0.4400 -2.1638 1.2493 40 1 0.6008 -0.2978 2.6592 41 1 3.4359 0.0887 3.3675 42 1 2.4733 -1.3442 3.8018 43 1 0.8909 0.0989 5.0523 44 1 1.8538 1.5313 4.6175 45 1 3.8151 0.5678 5.7900 46 1 2.8517 -0.8644 6.2245 47 1 1.2694 0.5780 7.4745 48 1 2.2324 2.0106 7.0406 49 1 1.6282 2.4159 10.6483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717485137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:34 Heat of formation + Delta-G solvation = -69.260817 kcal Electronic energy + Delta-G solvation = -21061.092070 eV Core-core repulsion = 18213.051205 eV Total energy + Delta-G solvation = -2848.040865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14126 -37.57951 -35.95552 -34.84638 -33.75355 -31.04341 -29.28113 -28.58229 -28.03825 -26.30622 -25.82938 -23.41263 -22.60194 -21.83081 -20.83722 -18.69793 -18.39873 -17.01202 -16.60101 -16.51563 -16.15876 -15.64643 -15.41255 -15.14528 -14.70087 -14.56859 -14.26197 -14.02622 -13.72360 -13.38782 -13.14994 -12.99642 -12.92274 -12.83165 -12.79855 -12.69630 -12.47106 -12.32041 -12.13405 -12.10587 -12.09733 -11.78671 -11.48850 -11.40017 -11.32471 -11.21597 -11.06389 -10.83240 -10.70491 -10.55498 -9.22453 -8.20253 -6.32048 1.38869 1.42533 1.50523 2.40588 3.12214 3.20424 3.70344 3.75508 3.96044 4.07129 4.19753 4.21025 4.26489 4.37887 4.43798 4.49269 4.56095 4.58742 4.63280 4.69312 4.72610 4.81782 4.85571 4.91472 4.93324 4.96773 5.01110 5.07520 5.09827 5.16653 5.21726 5.24926 5.25725 5.26178 5.28381 5.35293 5.38470 5.50369 5.54380 5.54904 5.60517 5.69534 5.77398 5.86222 6.19463 6.25462 6.52260 6.85292 7.37213 8.91524 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.002921 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.830892 B = 9584.694683 C =10015.502713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.058 4.058 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.134 4.134 10 C 0.093 3.907 11 H 0.070 0.930 12 N -0.690 5.690 13 C 0.073 3.927 14 C -0.105 4.105 15 C -0.097 4.097 16 C 0.024 3.976 17 C -0.547 4.547 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.341 0.659 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.049 0.951 47 H -0.011 1.011 48 H -0.012 1.012 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -10.503 -25.506 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.142 4.142 6 C -0.059 4.059 7 C -0.202 4.202 8 C -0.198 4.198 9 C -0.173 4.173 10 C -0.016 4.016 11 H 0.088 0.912 12 N -0.319 5.319 13 C -0.056 4.056 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.013 4.013 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.191 1.191 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.454 -9.792 -25.540 27.357 hybrid contribution 0.077 -0.715 1.468 1.634 sum -0.377 -10.506 -24.072 26.268 Atomic orbital electron populations 1.21861 0.95051 1.01781 1.01553 1.21021 0.96333 0.98776 0.93373 0.92048 1.21604 1.00777 0.95649 0.97099 1.21605 1.00833 0.95022 0.96784 1.20459 0.95587 0.95126 0.94744 1.21978 0.94769 1.01873 1.01611 1.21859 1.00982 0.95148 1.01785 1.22298 1.01053 0.96213 0.97743 1.21632 0.99032 0.90982 0.89984 0.91169 1.60611 1.05879 1.61573 1.03883 1.21830 0.96753 0.97339 0.89656 1.21456 0.98682 1.00397 0.93719 1.21395 0.98401 0.99408 0.94273 1.19007 0.94951 0.94287 0.93067 1.21729 1.10494 1.30336 0.95961 0.92213 1.26033 0.96992 0.94732 1.02272 1.70103 1.28052 1.33771 1.25551 0.85481 0.78939 0.78720 0.77792 1.19102 1.20710 1.19076 0.93198 0.92487 0.92080 0.91788 0.91127 0.91273 0.91530 0.93592 0.91886 0.92356 0.92591 0.91854 0.93346 0.93408 0.91407 0.84030 0.91539 0.95255 0.92975 0.92717 0.93194 0.93237 0.99249 0.99321 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.23 71.98 0.59 -1.82 16 2 C -0.08 -1.34 2.91 -10.79 -0.03 -1.37 16 3 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -1.59 5.18 30.59 0.16 -1.43 16 5 C -0.11 -1.36 4.46 30.59 0.14 -1.22 16 6 C -0.06 -0.86 0.77 -52.18 -0.04 -0.90 16 7 C -0.15 -2.18 7.78 71.98 0.56 -1.62 16 8 C -0.14 -1.92 8.47 71.98 0.61 -1.31 16 9 C -0.13 -2.41 3.71 30.60 0.11 -2.30 16 10 C 0.09 1.87 1.89 44.92 0.09 1.95 16 11 H 0.07 1.52 6.08 -2.39 -0.01 1.51 16 12 N -0.69 -16.82 5.77 -491.54 -2.83 -19.65 16 13 C 0.07 2.07 5.48 86.30 0.47 2.54 16 14 C -0.10 -3.68 5.47 30.59 0.17 -3.51 16 15 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 16 C 0.02 1.32 4.97 29.85 0.15 1.47 16 17 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 20 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 21 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H 0.05 0.95 7.21 -2.39 -0.02 0.93 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.93 4.81 -2.38 -0.01 0.92 16 28 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.92 4.81 -2.39 -0.01 0.91 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.98 7.45 -2.39 -0.02 0.97 16 39 H 0.07 1.20 6.42 -2.39 -0.02 1.19 16 40 H 0.34 8.02 7.73 -89.69 -0.69 7.32 16 41 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 42 H 0.03 0.81 7.44 -2.39 -0.02 0.79 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 45 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 48 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 49 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -63.79 359.99 3.49 -60.30 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.19 Total: 15.57 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 3.83 Total: -45.21 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.55 Total: -77.83 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.79 3.49 -60.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.966 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds