Wall clock time and date at job start Mon Mar 30 2020 07:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47341 * 2 1 4 4 C 1.53005 * 109.46944 * 119.99601 * 2 1 3 5 5 C 1.53010 * 109.46995 * 60.00104 * 4 2 1 6 6 C 1.52995 * 109.46782 * 59.99738 * 5 4 2 7 7 C 1.53004 * 109.47078 * 60.00369 * 6 5 4 8 8 C 1.53000 * 109.46745 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47573 * 299.99914 * 6 5 4 10 10 C 1.52995 * 109.47168 * 239.99567 * 2 1 3 11 11 H 1.09004 * 109.47127 * 180.02562 * 10 2 1 12 12 N 1.46895 * 109.47137 * 60.00244 * 10 2 1 13 13 C 1.46896 * 111.00306 * 154.99747 * 12 10 2 14 14 C 1.53006 * 109.47501 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47308 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47025 * 60.00335 * 1 2 3 28 28 H 1.09004 * 109.47219 * 179.97438 * 4 2 1 29 29 H 1.08999 * 109.46955 * 300.00326 * 4 2 1 30 30 H 1.09001 * 109.47007 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46955 * 299.99939 * 5 4 2 32 32 H 1.09001 * 109.47079 * 59.99897 * 7 6 5 33 33 H 1.09006 * 109.46762 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.46910 * 299.99212 * 7 6 5 35 35 H 1.09001 * 109.47477 * 60.00709 * 8 6 5 36 36 H 1.09006 * 109.47258 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47653 * 300.00252 * 8 6 5 38 38 H 1.09004 * 109.47214 * 300.00442 * 9 6 5 39 39 H 1.09006 * 109.47377 * 180.02562 * 9 6 5 40 40 H 1.00907 * 111.00152 * 31.04271 * 12 10 2 41 41 H 1.09000 * 109.47017 * 60.00110 * 13 12 10 42 42 H 1.08996 * 109.47227 * 300.00430 * 13 12 10 43 43 H 1.09000 * 109.46866 * 60.00053 * 14 13 12 44 44 H 1.09001 * 109.46611 * 300.00170 * 14 13 12 45 45 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 46 46 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 47 47 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 48 48 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 49 49 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2494 6 6 2.0399 -2.8850 0.0002 7 6 3.5700 -2.8850 0.0003 8 6 1.5305 -4.3276 0.0006 9 6 1.5300 -2.1638 -1.2491 10 6 2.0400 -0.7213 -1.2491 11 1 3.1300 -0.7217 -1.2489 12 7 1.5504 -0.0289 -2.4486 13 6 2.4341 -0.2747 -3.5960 14 6 1.8924 0.4604 -4.8237 15 6 2.8125 0.2038 -6.0189 16 6 2.2705 0.9384 -7.2467 17 6 3.1771 0.6862 -8.4238 18 1 4.0525 0.0645 -8.3076 19 6 2.8895 1.2499 -9.6487 20 7 3.6810 1.0302 -10.6758 21 14 1.3757 2.3258 -9.8494 22 1 1.7308 3.7386 -9.5611 23 1 0.8717 2.2164 -11.2418 24 1 0.3212 1.8779 -8.9046 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1300 -0.7216 1.2492 29 1 1.6766 -0.2073 2.1393 30 1 1.8936 -2.6777 2.1392 31 1 0.4399 -2.1637 1.2494 32 1 3.9333 -3.3989 0.8903 33 1 3.9333 -3.3993 -0.8896 34 1 3.9333 -1.8574 0.0002 35 1 0.4404 -4.3281 0.0007 36 1 1.8934 -4.8414 -0.8897 37 1 1.8941 -4.8413 0.8906 38 1 0.4400 -2.1638 -1.2491 39 1 1.8930 -2.6779 -2.1391 40 1 1.4461 0.9601 -2.2779 41 1 2.4735 -1.3445 -3.8016 42 1 3.4360 0.0884 -3.3673 43 1 1.8527 1.5301 -4.6184 44 1 0.8906 0.0968 -5.0522 45 1 2.8519 -0.8660 -6.2241 46 1 3.8146 0.5671 -5.7907 47 1 1.2686 0.5747 -7.4747 48 1 2.2308 2.0082 -7.0418 49 1 3.4784 1.4265 -11.5377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717485141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:37 Heat of formation + Delta-G solvation = -49.783677 kcal Electronic energy + Delta-G solvation = -21102.097213 eV Core-core repulsion = 18254.900940 eV Total energy + Delta-G solvation = -2847.196273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36895 -36.46297 -34.69557 -33.54363 -32.07649 -30.01775 -28.45316 -27.70254 -27.36905 -25.43353 -24.30402 -22.12472 -21.08887 -20.45636 -19.88175 -17.83076 -16.63575 -16.05057 -15.65827 -15.38652 -14.89629 -14.59984 -14.42269 -14.15090 -13.66353 -13.37628 -12.99235 -12.84825 -12.54722 -12.38126 -12.24770 -12.14760 -12.08593 -11.78937 -11.68177 -11.57970 -11.45951 -11.12435 -10.96717 -10.85922 -10.72026 -10.54275 -10.42635 -10.15759 -10.08908 -9.84084 -9.63702 -9.41278 -9.11030 -8.49530 -8.32070 -6.00205 -3.97641 3.33992 3.41119 3.46202 4.07380 4.40741 4.42649 4.49468 4.69278 4.84612 4.88427 5.01600 5.14791 5.22289 5.32009 5.33445 5.34910 5.36480 5.42745 5.47676 5.52444 5.57136 5.61610 5.71786 5.75674 5.80478 5.83157 5.85713 5.88716 5.92575 5.94915 5.99918 6.10096 6.16720 6.21764 6.25176 6.29985 6.40247 6.44829 6.71550 6.81659 6.96300 7.19036 7.38343 7.45959 7.51931 7.85368 8.59376 9.05202 9.62941 11.13479 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.003078 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.247414 B = 9094.219328 C = 9515.175651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.115 4.115 5 C -0.109 4.109 6 C -0.065 4.065 7 C -0.146 4.146 8 C -0.141 4.141 9 C -0.096 4.096 10 C 0.091 3.909 11 H 0.044 0.956 12 N -0.686 5.686 13 C 0.060 3.940 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.014 4.014 17 C -0.519 4.519 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.338 0.662 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.015 0.985 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -5.936 27.190 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.066 4.066 7 C -0.203 4.203 8 C -0.198 4.198 9 C -0.134 4.134 10 C -0.019 4.019 11 H 0.062 0.938 12 N -0.317 5.317 13 C -0.068 4.068 14 C -0.156 4.156 15 C -0.139 4.139 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.088 0.912 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.156 0.844 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.033 0.967 48 H 0.027 0.973 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.505 -6.397 26.822 28.119 hybrid contribution 0.130 1.162 -0.099 1.173 sum -5.375 -5.235 26.723 27.757 Atomic orbital electron populations 1.21845 0.94546 1.02251 1.01409 1.21260 0.96944 0.98588 0.94342 0.91732 1.21591 1.00674 0.95735 0.97244 1.21628 1.00844 0.95125 0.97012 1.20544 0.95543 0.95065 0.95413 1.21987 0.94913 1.01904 1.01475 1.21852 1.00924 0.95426 1.01591 1.21599 1.01365 0.94050 0.96417 1.21549 0.96896 0.94404 0.89015 0.93824 1.60529 1.51347 1.15490 1.04357 1.22079 0.93295 1.00907 0.90562 1.21664 1.00420 0.99312 0.94161 1.21413 0.97812 1.00555 0.94141 1.19567 0.96744 0.95107 0.93695 1.21201 1.10510 1.31041 0.92988 0.91155 1.25053 0.96493 0.96224 0.95892 1.69924 1.38053 1.45354 1.01236 0.86755 0.84093 0.81095 0.77226 1.20374 1.21447 1.18941 0.92081 0.93611 0.91757 0.91855 0.92064 0.92345 0.91588 0.93020 0.92727 0.92216 0.92729 0.92605 0.92893 0.91020 0.92096 0.84405 0.91266 0.95657 0.92864 0.91713 0.92874 0.93148 0.96657 0.97250 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.34 37.16 0.31 -0.93 16 2 C -0.09 -0.80 2.57 -90.62 -0.23 -1.04 16 3 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 4 C -0.11 -0.88 5.18 -26.72 -0.14 -1.01 16 5 C -0.11 -0.82 4.46 -26.73 -0.12 -0.94 16 6 C -0.07 -0.54 0.77 -154.51 -0.12 -0.66 16 7 C -0.15 -1.22 7.78 37.16 0.29 -0.93 16 8 C -0.14 -1.10 8.47 37.16 0.31 -0.78 16 9 C -0.10 -0.97 3.96 -26.73 -0.11 -1.07 16 10 C 0.09 0.93 1.91 -67.72 -0.13 0.80 16 11 H 0.04 0.48 6.09 -51.93 -0.32 0.16 16 12 N -0.69 -8.13 5.59 -106.73 -0.60 -8.73 16 13 C 0.06 0.83 5.48 -3.82 -0.02 0.81 16 14 C -0.12 -1.92 5.48 -26.73 -0.15 -2.07 16 15 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 18 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 21 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.62 7.48 -51.93 -0.39 0.23 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 39 H 0.06 0.69 7.46 -51.93 -0.39 0.30 16 40 H 0.34 3.79 8.19 -39.29 -0.32 3.46 16 41 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 42 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 48 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.28 356.99 -9.46 -39.74 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -9.57 Total: -1.95 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -0.78 Total: -24.23 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.18 Total: -36.55 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.28 -9.46 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.042 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds