Wall clock time and date at job start Mon Mar 30 2020 07:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47341 * 2 1 4 4 C 1.53005 * 109.46944 * 119.99601 * 2 1 3 5 5 C 1.53010 * 109.46995 * 60.00104 * 4 2 1 6 6 C 1.52995 * 109.46782 * 59.99738 * 5 4 2 7 7 C 1.53004 * 109.47078 * 60.00369 * 6 5 4 8 8 C 1.53000 * 109.46745 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47573 * 299.99914 * 6 5 4 10 10 C 1.52995 * 109.47168 * 239.99567 * 2 1 3 11 11 H 1.09004 * 109.47127 * 180.02562 * 10 2 1 12 12 N 1.46895 * 109.47137 * 60.00244 * 10 2 1 13 13 C 1.46896 * 111.00306 * 154.99747 * 12 10 2 14 14 C 1.53006 * 109.47501 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46997 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47308 * 299.99990 * 1 2 3 27 27 H 1.09001 * 109.47025 * 60.00335 * 1 2 3 28 28 H 1.09004 * 109.47219 * 179.97438 * 4 2 1 29 29 H 1.08999 * 109.46955 * 300.00326 * 4 2 1 30 30 H 1.09001 * 109.47007 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46955 * 299.99939 * 5 4 2 32 32 H 1.09001 * 109.47079 * 59.99897 * 7 6 5 33 33 H 1.09006 * 109.46762 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.46910 * 299.99212 * 7 6 5 35 35 H 1.09001 * 109.47477 * 60.00709 * 8 6 5 36 36 H 1.09006 * 109.47258 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47653 * 300.00252 * 8 6 5 38 38 H 1.09004 * 109.47214 * 300.00442 * 9 6 5 39 39 H 1.09006 * 109.47377 * 180.02562 * 9 6 5 40 40 H 1.00907 * 111.00152 * 31.04271 * 12 10 2 41 41 H 1.09000 * 109.47017 * 60.00110 * 13 12 10 42 42 H 1.08996 * 109.47227 * 300.00430 * 13 12 10 43 43 H 1.09000 * 109.46866 * 60.00053 * 14 13 12 44 44 H 1.09001 * 109.46611 * 300.00170 * 14 13 12 45 45 H 1.09000 * 109.47486 * 60.00167 * 15 14 13 46 46 H 1.09001 * 109.47362 * 299.99445 * 15 14 13 47 47 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 48 48 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 49 49 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2494 6 6 2.0399 -2.8850 0.0002 7 6 3.5700 -2.8850 0.0003 8 6 1.5305 -4.3276 0.0006 9 6 1.5300 -2.1638 -1.2491 10 6 2.0400 -0.7213 -1.2491 11 1 3.1300 -0.7217 -1.2489 12 7 1.5504 -0.0289 -2.4486 13 6 2.4341 -0.2747 -3.5960 14 6 1.8924 0.4604 -4.8237 15 6 2.8125 0.2038 -6.0189 16 6 2.2705 0.9384 -7.2467 17 6 3.1771 0.6862 -8.4238 18 1 4.0525 0.0645 -8.3076 19 6 2.8895 1.2499 -9.6487 20 7 3.6810 1.0302 -10.6758 21 14 1.3757 2.3258 -9.8494 22 1 1.7308 3.7386 -9.5611 23 1 0.8717 2.2164 -11.2418 24 1 0.3212 1.8779 -8.9046 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1300 -0.7216 1.2492 29 1 1.6766 -0.2073 2.1393 30 1 1.8936 -2.6777 2.1392 31 1 0.4399 -2.1637 1.2494 32 1 3.9333 -3.3989 0.8903 33 1 3.9333 -3.3993 -0.8896 34 1 3.9333 -1.8574 0.0002 35 1 0.4404 -4.3281 0.0007 36 1 1.8934 -4.8414 -0.8897 37 1 1.8941 -4.8413 0.8906 38 1 0.4400 -2.1638 -1.2491 39 1 1.8930 -2.6779 -2.1391 40 1 1.4461 0.9601 -2.2779 41 1 2.4735 -1.3445 -3.8016 42 1 3.4360 0.0884 -3.3673 43 1 1.8527 1.5301 -4.6184 44 1 0.8906 0.0968 -5.0522 45 1 2.8519 -0.8660 -6.2241 46 1 3.8146 0.5671 -5.7907 47 1 1.2686 0.5747 -7.4747 48 1 2.2308 2.0082 -7.0418 49 1 3.4784 1.4265 -11.5377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717485141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:36 Heat of formation + Delta-G solvation = -66.327911 kcal Electronic energy + Delta-G solvation = -21102.814624 eV Core-core repulsion = 18254.900940 eV Total energy + Delta-G solvation = -2847.913685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09623 -37.61752 -35.99296 -34.83085 -33.81129 -31.27158 -29.44600 -28.74744 -28.07151 -26.37143 -25.66662 -23.27422 -22.21202 -21.84353 -21.02476 -18.87759 -18.51441 -16.98160 -16.57759 -16.40995 -16.10170 -15.87546 -15.55912 -15.16587 -14.81072 -14.54810 -14.32098 -14.04271 -13.77405 -13.55271 -13.19326 -13.09281 -12.93687 -12.86189 -12.79137 -12.68655 -12.45452 -12.24549 -12.11251 -12.07021 -11.75708 -11.66538 -11.57350 -11.40206 -11.35421 -11.28551 -11.00868 -10.85382 -10.77039 -10.73306 -9.28430 -8.30404 -6.34703 1.35265 1.37670 1.50406 2.36179 3.04898 3.15397 3.70344 3.74064 3.99388 4.08925 4.17022 4.19252 4.22893 4.33996 4.44510 4.48617 4.57842 4.60462 4.62197 4.67849 4.72032 4.78282 4.84778 4.91546 4.94899 4.97412 5.03521 5.07164 5.11853 5.15761 5.16961 5.19801 5.21467 5.24916 5.27120 5.28952 5.35301 5.54171 5.54906 5.56673 5.57674 5.64776 5.67911 5.71891 6.17690 6.28712 6.54607 6.73584 7.30209 8.86722 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.003078 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.247414 B = 9094.219328 C = 9515.175651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.063 4.063 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.093 4.093 10 C 0.092 3.908 11 H 0.037 0.963 12 N -0.687 5.687 13 C 0.071 3.929 14 C -0.105 4.105 15 C -0.095 4.095 16 C -0.011 4.011 17 C -0.536 4.536 18 H 0.029 0.971 19 C 0.000 4.000 20 N -0.954 5.954 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.246 1.246 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.343 0.657 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -5.063 29.416 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.063 4.063 7 C -0.202 4.202 8 C -0.197 4.197 9 C -0.131 4.131 10 C -0.017 4.017 11 H 0.055 0.945 12 N -0.318 5.318 13 C -0.059 4.059 14 C -0.143 4.143 15 C -0.133 4.133 16 C -0.049 4.049 17 C -0.574 4.574 18 H 0.047 0.953 19 C -0.196 4.196 20 N -0.595 5.595 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.170 1.170 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.162 0.838 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.193 -5.531 29.074 30.457 hybrid contribution 0.748 0.822 -0.810 1.375 sum -6.445 -4.709 28.264 29.370 Atomic orbital electron populations 1.21804 0.94363 1.02073 1.01432 1.21239 0.96996 0.98625 0.93926 0.91474 1.21582 1.00682 0.95711 0.97020 1.21608 1.00889 0.95037 0.96752 1.20528 0.95475 0.95299 0.95042 1.21975 0.94930 1.01732 1.01521 1.21844 1.01032 0.95086 1.01746 1.21561 1.00908 0.94025 0.96625 1.21576 0.96519 0.94523 0.89077 0.94483 1.60489 1.50789 1.16100 1.04462 1.21853 0.93486 1.00059 0.90459 1.21480 0.99182 1.00245 0.93351 1.21293 0.98370 0.99410 0.94258 1.19533 0.95776 0.96096 0.93471 1.21577 1.10191 1.30403 0.95239 0.95307 1.26092 1.00269 0.97886 0.95343 1.70080 1.40439 1.46916 1.02035 0.85587 0.79732 0.79171 0.77736 1.18990 1.20866 1.16992 0.92349 0.92470 0.92833 0.91856 0.90867 0.91274 0.91481 0.91922 0.93743 0.92488 0.92562 0.93393 0.91812 0.91576 0.93966 0.83764 0.91979 0.95653 0.91877 0.91860 0.93722 0.93640 0.96353 0.96356 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.34 71.98 0.60 -1.54 16 2 C -0.09 -1.37 2.57 -10.79 -0.03 -1.40 16 3 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 4 C -0.11 -1.45 5.18 30.60 0.16 -1.29 16 5 C -0.11 -1.35 4.46 30.60 0.14 -1.22 16 6 C -0.06 -0.96 0.77 -52.18 -0.04 -1.00 16 7 C -0.14 -2.25 7.78 71.98 0.56 -1.69 16 8 C -0.14 -2.01 8.47 71.98 0.61 -1.40 16 9 C -0.09 -1.80 3.96 30.59 0.12 -1.68 16 10 C 0.09 1.78 1.91 44.91 0.09 1.86 16 11 H 0.04 0.78 6.09 -2.38 -0.01 0.77 16 12 N -0.69 -15.37 5.59 -491.59 -2.75 -18.12 16 13 C 0.07 1.89 5.48 86.31 0.47 2.36 16 14 C -0.10 -3.27 5.48 30.60 0.17 -3.10 16 15 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 16 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 17 C -0.54 -32.18 9.66 25.60 0.25 -31.93 16 18 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 19 C 0.00 0.02 5.47 84.65 0.46 0.49 16 20 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 21 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 25 H 0.06 0.93 4.81 -2.38 -0.01 0.91 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.94 7.48 -2.39 -0.02 0.92 16 28 H 0.06 0.84 6.43 -2.38 -0.02 0.82 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.87 6.43 -2.38 -0.02 0.85 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.91 4.81 -2.39 -0.01 0.90 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 1.35 6.43 -2.38 -0.02 1.33 16 39 H 0.04 0.96 7.46 -2.38 -0.02 0.94 16 40 H 0.34 7.06 8.19 -89.69 -0.73 6.33 16 41 H 0.06 1.75 7.44 -2.39 -0.02 1.73 16 42 H 0.03 0.68 8.06 -2.39 -0.02 0.66 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 48 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 49 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -65.54 356.99 3.36 -62.18 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.09 Total: 15.45 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.83 Total: -45.63 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.45 Total: -79.31 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -65.54 3.36 -62.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -65.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds