Wall clock time and date at job start Mon Mar 30 2020 07:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 C 1.53002 * 109.46800 * 239.99924 * 2 1 3 5 5 C 1.52997 * 109.47092 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47164 * 60.00174 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52992 * 109.47223 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46623 * 299.99900 * 6 5 4 10 10 C 1.52997 * 109.47086 * 120.00335 * 2 1 3 11 11 H 1.08992 * 109.47530 * 60.00057 * 10 2 1 12 12 N 1.46905 * 109.46980 * 299.99346 * 10 2 1 13 13 C 1.46901 * 111.00028 * 155.00285 * 12 10 2 14 14 C 1.52996 * 109.47002 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46743 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47064 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47328 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99874 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00344 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47025 * 89.99677 * 21 19 17 23 23 H 1.48501 * 109.47253 * 209.99754 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99919 * 21 19 17 25 25 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46630 * 300.00151 * 1 2 3 27 27 H 1.08992 * 109.47022 * 60.00386 * 1 2 3 28 28 H 1.09002 * 109.47067 * 60.00027 * 4 2 1 29 29 H 1.09000 * 109.47312 * 300.00000 * 4 2 1 30 30 H 1.09000 * 109.47140 * 300.00226 * 5 4 2 31 31 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 34 34 H 1.09004 * 109.47261 * 300.00303 * 7 6 5 35 35 H 1.09001 * 109.47066 * 299.99881 * 8 6 5 36 36 H 1.08996 * 109.47747 * 59.99547 * 8 6 5 37 37 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46716 * 179.97438 * 9 6 5 39 39 H 1.09000 * 109.47486 * 299.99829 * 9 6 5 40 40 H 1.00897 * 110.99480 * 31.05308 * 12 10 2 41 41 H 1.09001 * 109.46938 * 300.00606 * 13 12 10 42 42 H 1.08999 * 109.46968 * 60.00151 * 13 12 10 43 43 H 1.08998 * 109.46915 * 299.99680 * 14 13 12 44 44 H 1.08993 * 109.47102 * 60.00112 * 14 13 12 45 45 H 1.08998 * 109.46939 * 299.99402 * 15 14 13 46 46 H 1.08999 * 109.47312 * 59.99626 * 15 14 13 47 47 H 1.09001 * 109.47352 * 299.99776 * 16 15 14 48 48 H 1.08999 * 109.47231 * 59.99736 * 16 15 14 49 49 H 0.96997 * 120.00177 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2497 6 6 4.0806 -1.4417 -0.0004 7 6 3.5710 -2.8843 -0.0001 8 6 5.6105 -1.4406 -0.0005 9 6 3.5706 -0.7204 1.2488 10 6 2.0401 -0.7213 1.2492 11 1 1.6768 -1.7489 1.2492 12 7 1.5505 -0.0287 2.4487 13 6 1.4877 -0.9438 3.5961 14 6 0.9741 -0.1883 4.8234 15 6 0.9093 -1.1413 6.0187 16 6 0.3962 -0.3856 7.2461 17 6 0.3318 -1.3244 8.4233 18 1 0.6277 -2.3566 8.3076 19 6 -0.1048 -0.8654 9.6479 20 7 -0.4655 0.3914 9.7887 21 14 -0.1839 -2.0289 11.1072 22 1 1.1099 -1.9981 11.8355 23 1 -1.2759 -1.6047 12.0199 24 1 -0.4486 -3.4087 10.6264 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6766 -0.2074 -2.1393 29 1 1.6767 -1.7490 -1.2493 30 1 3.9330 0.3070 -1.2499 31 1 3.9333 -1.2342 -2.1399 32 1 3.9344 -3.3978 0.8901 33 1 3.9344 -3.3982 -0.8901 34 1 2.4810 -2.8847 0.0002 35 1 5.9742 -1.9542 -0.8905 36 1 5.9732 -0.4128 -0.0005 37 1 5.9742 -1.9538 0.8897 38 1 3.9340 -1.2342 2.1388 39 1 3.9336 0.3074 1.2486 40 1 0.6529 0.3992 2.2779 41 1 0.8113 -1.7674 3.3675 42 1 2.4831 -1.3375 3.8017 43 1 1.6502 0.6355 5.0522 44 1 -0.0214 0.2051 4.6175 45 1 0.2334 -1.9652 5.7901 46 1 1.9049 -1.5343 6.2243 47 1 1.0724 0.4382 7.4746 48 1 -0.5993 0.0078 7.0407 49 1 -0.7723 0.7143 10.6503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717485144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:39 Heat of formation + Delta-G solvation = -55.936038 kcal Electronic energy + Delta-G solvation = -20982.228152 eV Core-core repulsion = 18134.765092 eV Total energy + Delta-G solvation = -2847.463059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15143 -36.45051 -34.74323 -33.49682 -32.01908 -29.77936 -28.92114 -27.55323 -27.33155 -24.51923 -24.15987 -22.25997 -21.11045 -20.52598 -19.80937 -18.64606 -16.28296 -15.96978 -15.28431 -15.14237 -14.64068 -14.54942 -14.43059 -14.28758 -13.71292 -13.39926 -12.94957 -12.86398 -12.55141 -12.34841 -12.23658 -12.13470 -11.96634 -11.63460 -11.56586 -11.48469 -11.35909 -10.99809 -10.94590 -10.85733 -10.58836 -10.52070 -10.39509 -10.34610 -10.22420 -10.04456 -9.58653 -9.20978 -8.95985 -8.30344 -8.25009 -5.95052 -3.97170 3.34555 3.40423 3.44015 4.12956 4.41875 4.47761 4.50431 4.69769 4.76587 4.87573 5.04260 5.19668 5.25533 5.30974 5.34866 5.38394 5.40435 5.47771 5.52430 5.53614 5.60458 5.62803 5.69331 5.76834 5.79303 5.82214 5.87111 5.92530 5.97465 5.99089 6.02632 6.13148 6.19643 6.21294 6.27230 6.36757 6.40415 6.57513 6.87962 7.02028 7.14619 7.31249 7.54304 7.74427 7.90795 8.06416 8.49329 9.10438 9.66519 11.16337 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.002957 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.554565 B = 9467.156455 C = 9964.881819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.145 4.145 8 C -0.141 4.141 9 C -0.095 4.095 10 C 0.091 3.909 11 H 0.044 0.956 12 N -0.690 5.690 13 C 0.061 3.939 14 C -0.115 4.115 15 C -0.109 4.109 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.339 0.661 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.015 0.985 48 H 0.014 0.986 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -2.507 -24.973 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.203 4.203 8 C -0.198 4.198 9 C -0.133 4.133 10 C -0.018 4.018 11 H 0.062 0.938 12 N -0.323 5.323 13 C -0.068 4.068 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.762 -2.135 -24.665 25.946 hybrid contribution -0.868 -1.114 0.722 1.586 sum 6.895 -3.249 -23.943 25.127 Atomic orbital electron populations 1.21911 0.95506 1.01779 1.01931 1.21287 0.95179 1.00369 0.94373 0.90462 1.21610 0.95626 1.00721 0.97186 1.21591 0.95381 1.00445 0.97068 1.20552 0.95185 0.95459 0.95411 1.21983 1.01387 0.95443 1.01440 1.21849 0.94666 1.01714 1.01557 1.21580 0.94539 1.00761 0.96446 1.21571 0.95329 0.95855 0.89078 0.93776 1.60563 1.33567 1.33824 1.04345 1.22087 1.00365 0.93658 0.90668 1.21633 1.00472 0.99266 0.93955 1.21586 1.00155 0.97720 0.95221 1.19090 0.96167 0.95411 0.90919 1.21299 1.43343 0.96460 0.94694 0.92794 1.25034 0.95536 0.95094 0.98887 1.69968 1.44835 1.14427 1.24361 0.86615 0.77650 0.81225 0.82630 1.20679 1.21250 1.19921 0.92862 0.92253 0.92424 0.92053 0.91769 0.91939 0.92227 0.92743 0.93021 0.92191 0.92912 0.92679 0.92617 0.91981 0.91378 0.84033 0.95825 0.91420 0.91704 0.92885 0.93751 0.93498 0.96625 0.96763 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.96 37.16 0.33 -1.00 16 2 C -0.09 -0.85 2.38 -90.62 -0.22 -1.07 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -0.90 4.93 -26.73 -0.13 -1.03 16 5 C -0.11 -0.84 4.73 -26.73 -0.13 -0.97 16 6 C -0.07 -0.57 0.77 -154.51 -0.12 -0.68 16 7 C -0.15 -1.24 7.78 37.16 0.29 -0.95 16 8 C -0.14 -1.13 8.47 37.15 0.31 -0.82 16 9 C -0.10 -1.01 4.23 -26.70 -0.11 -1.12 16 10 C 0.09 0.99 1.70 -67.68 -0.12 0.87 16 11 H 0.04 0.51 6.09 -51.93 -0.32 0.19 16 12 N -0.69 -8.88 6.31 -106.70 -0.67 -9.56 16 13 C 0.06 0.90 5.48 -3.83 -0.02 0.88 16 14 C -0.12 -2.04 5.47 -26.73 -0.15 -2.18 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.73 7.46 -51.93 -0.39 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.34 4.17 6.16 -39.29 -0.24 3.92 16 41 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 42 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -29.98 365.32 -10.00 -39.98 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -9.81 Total: -2.09 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -0.74 Total: -24.04 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.06 Total: -36.41 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.98 -10.00 -39.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.956 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds