Wall clock time and date at job start Mon Mar 30 2020 07:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 C 1.53002 * 109.46800 * 239.99924 * 2 1 3 5 5 C 1.52997 * 109.47092 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47164 * 60.00174 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52992 * 109.47223 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.46623 * 299.99900 * 6 5 4 10 10 C 1.52997 * 109.47086 * 120.00335 * 2 1 3 11 11 H 1.08992 * 109.47530 * 60.00057 * 10 2 1 12 12 N 1.46905 * 109.46980 * 299.99346 * 10 2 1 13 13 C 1.46901 * 111.00028 * 155.00285 * 12 10 2 14 14 C 1.52996 * 109.47002 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46743 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47064 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47328 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99874 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00344 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47025 * 89.99677 * 21 19 17 23 23 H 1.48501 * 109.47253 * 209.99754 * 21 19 17 24 24 H 1.48499 * 109.47125 * 329.99919 * 21 19 17 25 25 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46630 * 300.00151 * 1 2 3 27 27 H 1.08992 * 109.47022 * 60.00386 * 1 2 3 28 28 H 1.09002 * 109.47067 * 60.00027 * 4 2 1 29 29 H 1.09000 * 109.47312 * 300.00000 * 4 2 1 30 30 H 1.09000 * 109.47140 * 300.00226 * 5 4 2 31 31 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 34 34 H 1.09004 * 109.47261 * 300.00303 * 7 6 5 35 35 H 1.09001 * 109.47066 * 299.99881 * 8 6 5 36 36 H 1.08996 * 109.47747 * 59.99547 * 8 6 5 37 37 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46716 * 179.97438 * 9 6 5 39 39 H 1.09000 * 109.47486 * 299.99829 * 9 6 5 40 40 H 1.00897 * 110.99480 * 31.05308 * 12 10 2 41 41 H 1.09001 * 109.46938 * 300.00606 * 13 12 10 42 42 H 1.08999 * 109.46968 * 60.00151 * 13 12 10 43 43 H 1.08998 * 109.46915 * 299.99680 * 14 13 12 44 44 H 1.08993 * 109.47102 * 60.00112 * 14 13 12 45 45 H 1.08998 * 109.46939 * 299.99402 * 15 14 13 46 46 H 1.08999 * 109.47312 * 59.99626 * 15 14 13 47 47 H 1.09001 * 109.47352 * 299.99776 * 16 15 14 48 48 H 1.08999 * 109.47231 * 59.99736 * 16 15 14 49 49 H 0.96997 * 120.00177 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2497 6 6 4.0806 -1.4417 -0.0004 7 6 3.5710 -2.8843 -0.0001 8 6 5.6105 -1.4406 -0.0005 9 6 3.5706 -0.7204 1.2488 10 6 2.0401 -0.7213 1.2492 11 1 1.6768 -1.7489 1.2492 12 7 1.5505 -0.0287 2.4487 13 6 1.4877 -0.9438 3.5961 14 6 0.9741 -0.1883 4.8234 15 6 0.9093 -1.1413 6.0187 16 6 0.3962 -0.3856 7.2461 17 6 0.3318 -1.3244 8.4233 18 1 0.6277 -2.3566 8.3076 19 6 -0.1048 -0.8654 9.6479 20 7 -0.4655 0.3914 9.7887 21 14 -0.1839 -2.0289 11.1072 22 1 1.1099 -1.9981 11.8355 23 1 -1.2759 -1.6047 12.0199 24 1 -0.4486 -3.4087 10.6264 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6766 -0.2074 -2.1393 29 1 1.6767 -1.7490 -1.2493 30 1 3.9330 0.3070 -1.2499 31 1 3.9333 -1.2342 -2.1399 32 1 3.9344 -3.3978 0.8901 33 1 3.9344 -3.3982 -0.8901 34 1 2.4810 -2.8847 0.0002 35 1 5.9742 -1.9542 -0.8905 36 1 5.9732 -0.4128 -0.0005 37 1 5.9742 -1.9538 0.8897 38 1 3.9340 -1.2342 2.1388 39 1 3.9336 0.3074 1.2486 40 1 0.6529 0.3992 2.2779 41 1 0.8113 -1.7674 3.3675 42 1 2.4831 -1.3375 3.8017 43 1 1.6502 0.6355 5.0522 44 1 -0.0214 0.2051 4.6175 45 1 0.2334 -1.9652 5.7901 46 1 1.9049 -1.5343 6.2243 47 1 1.0724 0.4382 7.4746 48 1 -0.5993 0.0078 7.0407 49 1 -0.7723 0.7143 10.6503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717485144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:38 Heat of formation + Delta-G solvation = -71.490403 kcal Electronic energy + Delta-G solvation = -20982.902640 eV Core-core repulsion = 18134.765092 eV Total energy + Delta-G solvation = -2848.137547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92444 -37.63090 -36.10175 -34.91155 -33.67949 -31.02582 -29.70985 -28.83756 -28.19469 -26.15922 -24.96688 -23.52082 -22.27282 -21.92407 -21.02604 -19.37035 -18.44269 -17.08741 -16.55729 -16.28880 -15.97554 -15.76598 -15.33211 -15.11994 -14.60660 -14.46990 -14.35040 -14.04863 -13.88620 -13.43622 -13.38954 -13.05707 -12.92541 -12.83771 -12.75996 -12.65672 -12.41895 -12.31105 -12.28189 -12.13126 -12.01240 -11.69038 -11.57808 -11.40077 -11.32807 -11.18212 -11.09008 -10.91858 -10.72678 -10.56173 -9.29780 -8.20470 -6.32203 1.38864 1.40823 1.51956 2.40401 3.12077 3.15469 3.68779 3.75772 3.96529 4.03818 4.11539 4.14759 4.23349 4.35183 4.45562 4.50792 4.54911 4.60880 4.62946 4.63871 4.72124 4.83713 4.85370 4.88854 4.91723 4.95737 4.96352 5.09574 5.12867 5.14194 5.17241 5.21085 5.23783 5.26224 5.30265 5.33022 5.34926 5.43983 5.51488 5.53508 5.54424 5.66911 5.76834 5.85934 6.18924 6.25267 6.52862 6.85210 7.37136 8.91507 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.002957 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.554565 B = 9467.156455 C = 9964.881819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.105 4.105 6 C -0.063 4.063 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.093 4.093 10 C 0.093 3.907 11 H 0.041 0.959 12 N -0.696 5.696 13 C 0.074 3.926 14 C -0.105 4.105 15 C -0.097 4.097 16 C 0.024 3.976 17 C -0.546 4.546 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.263 1.263 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.343 0.657 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.049 0.951 47 H -0.012 1.012 48 H -0.010 1.010 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -3.788 -26.224 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.064 4.064 7 C -0.201 4.201 8 C -0.197 4.197 9 C -0.131 4.131 10 C -0.016 4.016 11 H 0.059 0.941 12 N -0.329 5.329 13 C -0.055 4.055 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.164 0.836 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.007 0.993 48 H 0.008 0.992 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.038 -3.419 -25.936 27.368 hybrid contribution -0.950 -0.664 1.106 1.602 sum 7.088 -4.083 -24.830 26.143 Atomic orbital electron populations 1.21902 0.95059 1.01837 1.02205 1.21247 0.95517 0.99903 0.94096 0.91081 1.21594 0.95628 1.00748 0.96812 1.21579 0.95311 1.00401 0.96944 1.20535 0.95570 0.95417 0.94836 1.21967 1.01170 0.95299 1.01655 1.21840 0.94191 1.01809 1.01846 1.21556 0.94378 1.00233 0.96952 1.21618 0.95408 0.95681 0.88940 0.94082 1.60529 1.33942 1.33717 1.04743 1.21834 1.00074 0.93494 0.90103 1.21459 1.00468 0.98369 0.93966 1.21396 0.99934 0.97849 0.94295 1.19013 0.94357 0.94896 0.93070 1.21745 1.43657 0.97090 0.95878 0.92231 1.26030 0.94818 0.96917 1.02281 1.70104 1.45457 1.16501 1.25419 0.85424 0.78023 0.79082 0.78380 1.19699 1.20595 1.18670 0.92882 0.93006 0.91147 0.90774 0.91596 0.92054 0.90903 0.93584 0.91763 0.92480 0.91670 0.92706 0.93283 0.93623 0.92334 0.83614 0.95334 0.91620 0.92738 0.92878 0.93185 0.93228 0.99310 0.99191 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.96 71.98 0.64 -1.77 16 2 C -0.09 -1.50 2.38 -10.79 -0.03 -1.52 16 3 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -1.49 4.93 30.59 0.15 -1.34 16 5 C -0.10 -1.42 4.73 30.60 0.14 -1.27 16 6 C -0.06 -1.00 0.77 -52.18 -0.04 -1.04 16 7 C -0.14 -2.24 7.78 71.98 0.56 -1.68 16 8 C -0.14 -2.06 8.47 71.98 0.61 -1.45 16 9 C -0.09 -1.92 4.23 30.61 0.13 -1.79 16 10 C 0.09 1.93 1.70 44.93 0.08 2.01 16 11 H 0.04 0.90 6.09 -2.39 -0.01 0.89 16 12 N -0.70 -17.57 6.31 -491.48 -3.10 -20.68 16 13 C 0.07 2.15 5.48 86.30 0.47 2.62 16 14 C -0.10 -3.72 5.47 30.59 0.17 -3.55 16 15 C -0.10 -4.14 5.15 30.60 0.16 -3.98 16 16 C 0.02 1.31 4.97 29.85 0.15 1.46 16 17 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 20 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.89 6.21 -2.39 -0.01 0.88 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.92 4.81 -2.38 -0.01 0.91 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.04 1.08 7.46 -2.39 -0.02 1.06 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.34 8.22 6.16 -89.70 -0.55 7.67 16 41 H 0.03 0.80 8.06 -2.39 -0.02 0.79 16 42 H 0.07 1.94 7.44 -2.39 -0.02 1.92 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -64.29 365.32 3.42 -60.87 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.31 Total: 15.75 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 3.89 Total: -45.01 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.82 Total: -78.84 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.29 3.42 -60.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717485144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.620 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds