Wall clock time and date at job start Mon Mar 30 2020 06:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 C 1.53000 * 109.47322 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46848 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46767 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47103 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47227 * 54.99653 * 7 6 5 9 9 C 1.52999 * 109.47151 * 174.99919 * 7 6 5 10 10 N 1.46901 * 109.47148 * 294.99874 * 7 6 5 11 11 C 1.46897 * 111.00150 * 155.00130 * 10 7 6 12 12 H 1.09002 * 110.43506 * 325.69899 * 11 10 7 13 13 C 1.54266 * 110.59994 * 88.32056 * 11 10 7 14 14 C 1.53869 * 106.60137 * 142.34346 * 13 11 10 15 15 C 1.54273 * 106.59806 * 0.02562 * 14 13 11 16 16 H 1.08993 * 110.48688 * 95.06512 * 15 14 13 17 17 C 1.50701 * 110.48326 * 217.71314 * 15 14 13 18 18 H 1.08001 * 119.99763 * 114.77638 * 17 15 14 19 19 C 1.37876 * 119.99881 * 294.77058 * 17 15 14 20 20 N 1.31514 * 120.00252 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99719 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47562 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46911 * 120.00247 * 21 19 17 24 24 H 1.48496 * 109.46955 * 239.99798 * 21 19 17 25 25 C 1.54885 * 104.19251 * 336.38783 * 15 14 13 26 26 H 1.09000 * 109.46800 * 299.99521 * 1 2 3 27 27 H 1.08997 * 109.47218 * 59.99388 * 1 2 3 28 28 H 1.09001 * 109.47258 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46800 * 240.00478 * 2 1 3 30 30 H 1.08997 * 109.47218 * 120.00612 * 2 1 3 31 31 H 1.09002 * 109.46882 * 59.99934 * 3 2 1 32 32 H 1.08997 * 109.47473 * 300.00456 * 3 2 1 33 33 H 1.09000 * 109.46800 * 60.00478 * 4 3 2 34 34 H 1.08997 * 109.47218 * 300.00612 * 4 3 2 35 35 H 1.09000 * 109.47205 * 60.00511 * 5 4 3 36 36 H 1.09003 * 109.47379 * 299.99766 * 5 4 3 37 37 H 1.09002 * 109.47536 * 59.99753 * 6 5 4 38 38 H 1.09003 * 109.46681 * 299.99827 * 6 5 4 39 39 H 1.09001 * 109.47272 * 59.99761 * 9 7 6 40 40 H 1.09001 * 109.47209 * 179.97438 * 9 7 6 41 41 H 1.09007 * 109.46928 * 299.99699 * 9 7 6 42 42 H 1.00906 * 110.99807 * 278.95751 * 10 7 6 43 43 H 1.09003 * 110.03136 * 261.63059 * 13 11 10 44 44 H 1.08998 * 110.03298 * 23.05300 * 13 11 10 45 45 H 1.09002 * 110.03727 * 240.71379 * 14 13 11 46 46 H 1.09003 * 110.07452 * 119.30336 * 14 13 11 47 47 H 0.97000 * 119.99988 * 179.97438 * 20 19 17 48 48 H 1.08999 * 110.76189 * 279.63192 * 25 15 14 49 49 H 1.08999 * 110.91620 * 156.33287 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1200 4.3274 0.0000 8 1 5.6861 4.8655 0.8428 9 6 7.6449 4.3291 0.1245 10 7 5.7304 4.9857 -1.2541 11 6 5.6517 6.4424 -1.0818 12 1 5.2993 6.6886 -0.0801 13 6 7.0240 7.0952 -1.3471 14 6 6.7461 8.4239 -2.0716 15 6 5.2145 8.5325 -2.2208 16 1 4.7920 9.1163 -1.4031 17 6 4.8563 9.1469 -3.5495 18 1 4.3268 8.5641 -4.2887 19 6 5.2044 10.4530 -3.8212 20 7 5.8496 11.1625 -2.9212 21 14 4.7598 11.2148 -5.4679 22 1 4.0408 10.2151 -6.2979 23 1 3.8858 12.3949 -5.2474 24 1 5.9988 11.6402 -6.1671 25 6 4.7212 7.0659 -2.1512 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9338 0.9284 0.8890 35 1 3.7171 3.3982 0.8905 36 1 3.7163 3.3994 -0.8895 37 1 5.9727 2.3717 -0.8919 38 1 5.9740 2.3705 0.8881 39 1 8.0789 3.7910 -0.7183 40 1 8.0083 5.3568 0.1249 41 1 7.9340 3.8407 1.0551 42 1 6.3637 4.7436 -2.0015 43 1 7.5361 7.2844 -0.4036 44 1 7.6308 6.4456 -1.9779 45 1 7.2180 8.4192 -3.0542 46 1 7.1234 9.2584 -1.4806 47 1 6.0948 12.0813 -3.1126 48 1 4.8507 6.5687 -3.1125 49 1 3.6801 7.0203 -1.8316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824691164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:13 Heat of formation + Delta-G solvation = -59.408989 kcal Electronic energy + Delta-G solvation = -20667.197945 eV Core-core repulsion = 17819.584288 eV Total energy + Delta-G solvation = -2847.613658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.42905 -36.73083 -35.44962 -33.03158 -32.02974 -29.87343 -28.28584 -27.84541 -25.97533 -24.44805 -23.38177 -21.41715 -20.95165 -20.50038 -19.38893 -18.96711 -16.38346 -16.01136 -15.34943 -15.04817 -14.47464 -14.27638 -14.03437 -13.88284 -13.69401 -13.10424 -12.95967 -12.60788 -12.41588 -12.34625 -12.16143 -11.77287 -11.61334 -11.55561 -11.34085 -11.05740 -10.99874 -10.95777 -10.75258 -10.66612 -10.62216 -10.42833 -10.38309 -10.20890 -9.96204 -9.72812 -9.48822 -9.03662 -8.66390 -8.33021 -7.86877 -5.95635 -3.97454 3.32657 3.40743 3.45128 4.46818 4.56549 4.57488 4.78471 4.94267 4.99033 5.12531 5.20068 5.33076 5.37562 5.43058 5.47525 5.53635 5.62360 5.63122 5.70877 5.72314 5.76808 5.81922 5.87647 5.91772 5.98023 6.01788 6.03157 6.09654 6.17877 6.22916 6.29840 6.32359 6.44808 6.55215 6.60851 6.74759 6.81473 6.92445 7.10272 7.23340 7.40780 7.63075 7.76836 7.83581 7.97046 8.09333 8.54458 9.06528 9.66330 11.14354 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.003392 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.168256 B = 8253.945596 C = 9466.108718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.104 4.104 7 C 0.081 3.919 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.675 5.675 11 C 0.082 3.918 12 H 0.069 0.931 13 C -0.150 4.150 14 C -0.096 4.096 15 C 0.047 3.953 16 H 0.028 0.972 17 C -0.509 4.509 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.099 4.099 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.337 0.663 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.258 0.742 48 H 0.057 0.943 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -19.186 7.611 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.029 4.029 8 H 0.091 0.909 9 C -0.244 4.244 10 N -0.304 5.304 11 C -0.028 4.028 12 H 0.087 0.913 13 C -0.189 4.189 14 C -0.134 4.134 15 C 0.028 3.972 16 H 0.046 0.954 17 C -0.547 4.547 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.137 4.137 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.780 -19.117 7.741 20.812 hybrid contribution 0.961 0.819 -0.788 1.489 sum -1.819 -18.298 6.953 19.659 Atomic orbital electron populations 1.21787 0.96115 1.01306 1.01894 1.21544 0.95686 0.97351 1.01680 1.21629 0.95802 0.96236 1.02191 1.21622 0.95064 0.97668 1.01314 1.21497 0.95060 0.95559 1.02880 1.21559 0.96039 0.95655 1.00941 1.21629 0.92709 0.95166 0.93391 0.90944 1.22627 0.97879 1.02369 1.01522 1.60754 1.55206 1.08712 1.05771 1.22585 0.95591 0.85009 0.99569 0.91275 1.22992 0.96970 0.99850 0.99117 1.22047 1.00213 0.92786 0.98380 1.19450 0.91010 0.89902 0.96863 0.95373 1.21220 1.36274 0.96831 1.00362 0.92623 1.24996 0.95239 0.97264 0.96621 1.69985 1.40036 1.09170 1.33866 0.86612 0.78095 0.79262 0.84491 1.19769 1.21134 1.21184 1.22517 0.96732 0.97821 0.96651 0.92823 0.92681 0.93060 0.92220 0.92369 0.92209 0.91839 0.92367 0.92779 0.92832 0.90301 0.92302 0.92700 0.92824 0.92035 0.92865 0.84429 0.93904 0.93449 0.93252 0.93073 0.93269 0.92438 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 4 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 5 C -0.11 -1.25 5.10 -26.73 -0.14 -1.38 16 6 C -0.10 -1.13 4.89 -26.73 -0.13 -1.26 16 7 C 0.08 1.01 2.59 -67.71 -0.18 0.84 16 8 H 0.07 0.96 7.45 -51.93 -0.39 0.58 16 9 C -0.19 -2.15 8.97 37.16 0.33 -1.81 16 10 N -0.68 -9.90 5.58 -98.02 -0.55 -10.45 16 11 C 0.08 1.44 3.16 -66.07 -0.21 1.23 16 12 H 0.07 1.23 7.47 -51.93 -0.39 0.84 16 13 C -0.15 -2.77 5.01 -25.62 -0.13 -2.90 16 14 C -0.10 -2.23 5.60 -25.61 -0.14 -2.38 16 15 C 0.05 1.17 2.73 -90.11 -0.25 0.92 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.51 -14.11 8.36 -34.44 -0.29 -14.40 16 18 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 19 C 0.06 1.68 5.35 -17.82 -0.10 1.59 16 20 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.10 -2.07 5.96 -24.75 -0.15 -2.22 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.60 8.13 -51.93 -0.42 0.17 16 40 H 0.06 0.79 6.00 -51.93 -0.31 0.48 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.34 4.89 7.86 -39.29 -0.31 4.58 16 43 H 0.04 0.75 7.40 -51.93 -0.38 0.36 16 44 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 45 H 0.05 1.23 7.83 -51.93 -0.41 0.82 16 46 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -27.63 374.81 -10.78 -38.41 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -10.12 Total: 1.44 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -1.43 Total: -26.26 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.15 Total: -35.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.63 -10.78 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824691164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.002 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds