Wall clock time and date at job start Mon Mar 30 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 C 1.53000 * 109.47322 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46848 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46767 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47103 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47227 * 54.99653 * 7 6 5 9 9 C 1.52999 * 109.47151 * 174.99919 * 7 6 5 10 10 N 1.46901 * 109.47148 * 294.99874 * 7 6 5 11 11 C 1.46897 * 111.00150 * 155.00130 * 10 7 6 12 12 H 1.09002 * 110.43506 * 325.69899 * 11 10 7 13 13 C 1.54266 * 110.59994 * 88.32056 * 11 10 7 14 14 C 1.53869 * 106.60137 * 142.34346 * 13 11 10 15 15 C 1.54273 * 106.59806 * 0.02562 * 14 13 11 16 16 H 1.08993 * 110.48688 * 95.06512 * 15 14 13 17 17 C 1.50701 * 110.48326 * 217.71314 * 15 14 13 18 18 H 1.08001 * 119.99763 * 114.77638 * 17 15 14 19 19 C 1.37876 * 119.99881 * 294.77058 * 17 15 14 20 20 N 1.31514 * 120.00252 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99719 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47562 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46911 * 120.00247 * 21 19 17 24 24 H 1.48496 * 109.46955 * 239.99798 * 21 19 17 25 25 C 1.54885 * 104.19251 * 336.38783 * 15 14 13 26 26 H 1.09000 * 109.46800 * 299.99521 * 1 2 3 27 27 H 1.08997 * 109.47218 * 59.99388 * 1 2 3 28 28 H 1.09001 * 109.47258 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46800 * 240.00478 * 2 1 3 30 30 H 1.08997 * 109.47218 * 120.00612 * 2 1 3 31 31 H 1.09002 * 109.46882 * 59.99934 * 3 2 1 32 32 H 1.08997 * 109.47473 * 300.00456 * 3 2 1 33 33 H 1.09000 * 109.46800 * 60.00478 * 4 3 2 34 34 H 1.08997 * 109.47218 * 300.00612 * 4 3 2 35 35 H 1.09000 * 109.47205 * 60.00511 * 5 4 3 36 36 H 1.09003 * 109.47379 * 299.99766 * 5 4 3 37 37 H 1.09002 * 109.47536 * 59.99753 * 6 5 4 38 38 H 1.09003 * 109.46681 * 299.99827 * 6 5 4 39 39 H 1.09001 * 109.47272 * 59.99761 * 9 7 6 40 40 H 1.09001 * 109.47209 * 179.97438 * 9 7 6 41 41 H 1.09007 * 109.46928 * 299.99699 * 9 7 6 42 42 H 1.00906 * 110.99807 * 278.95751 * 10 7 6 43 43 H 1.09003 * 110.03136 * 261.63059 * 13 11 10 44 44 H 1.08998 * 110.03298 * 23.05300 * 13 11 10 45 45 H 1.09002 * 110.03727 * 240.71379 * 14 13 11 46 46 H 1.09003 * 110.07452 * 119.30336 * 14 13 11 47 47 H 0.97000 * 119.99988 * 179.97438 * 20 19 17 48 48 H 1.08999 * 110.76189 * 279.63192 * 25 15 14 49 49 H 1.08999 * 110.91620 * 156.33287 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1200 4.3274 0.0000 8 1 5.6861 4.8655 0.8428 9 6 7.6449 4.3291 0.1245 10 7 5.7304 4.9857 -1.2541 11 6 5.6517 6.4424 -1.0818 12 1 5.2993 6.6886 -0.0801 13 6 7.0240 7.0952 -1.3471 14 6 6.7461 8.4239 -2.0716 15 6 5.2145 8.5325 -2.2208 16 1 4.7920 9.1163 -1.4031 17 6 4.8563 9.1469 -3.5495 18 1 4.3268 8.5641 -4.2887 19 6 5.2044 10.4530 -3.8212 20 7 5.8496 11.1625 -2.9212 21 14 4.7598 11.2148 -5.4679 22 1 4.0408 10.2151 -6.2979 23 1 3.8858 12.3949 -5.2474 24 1 5.9988 11.6402 -6.1671 25 6 4.7212 7.0659 -2.1512 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9338 0.9284 0.8890 35 1 3.7171 3.3982 0.8905 36 1 3.7163 3.3994 -0.8895 37 1 5.9727 2.3717 -0.8919 38 1 5.9740 2.3705 0.8881 39 1 8.0789 3.7910 -0.7183 40 1 8.0083 5.3568 0.1249 41 1 7.9340 3.8407 1.0551 42 1 6.3637 4.7436 -2.0015 43 1 7.5361 7.2844 -0.4036 44 1 7.6308 6.4456 -1.9779 45 1 7.2180 8.4192 -3.0542 46 1 7.1234 9.2584 -1.4806 47 1 6.0948 12.0813 -3.1126 48 1 4.8507 6.5687 -3.1125 49 1 3.6801 7.0203 -1.8316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824691164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:12 Heat of formation + Delta-G solvation = -72.095438 kcal Electronic energy + Delta-G solvation = -20667.748071 eV Core-core repulsion = 17819.584288 eV Total energy + Delta-G solvation = -2848.163783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80746 -37.81946 -36.54799 -34.60504 -33.36655 -31.15012 -29.84948 -28.90537 -27.63966 -25.67426 -24.86986 -22.19456 -21.77185 -21.55589 -20.93638 -20.76348 -18.36923 -16.96383 -16.66963 -16.53774 -16.12539 -15.53789 -14.98403 -14.78591 -14.71415 -14.41339 -14.15582 -13.82666 -13.75974 -13.59005 -13.34812 -13.15706 -12.95797 -12.70547 -12.60468 -12.34772 -12.32947 -12.22414 -12.12057 -11.82237 -11.70552 -11.60134 -11.51048 -11.42751 -11.29149 -11.22127 -11.07146 -10.80865 -10.72835 -10.47789 -9.11587 -8.11742 -6.20904 1.39130 1.40832 1.52735 2.43598 3.18861 3.35696 3.77206 4.01239 4.07490 4.09413 4.19804 4.23912 4.29909 4.35732 4.38566 4.50028 4.63956 4.70354 4.74320 4.76797 4.87526 4.92450 4.94401 4.96338 5.03784 5.04170 5.07227 5.09219 5.16003 5.22025 5.23848 5.25365 5.29490 5.32798 5.38703 5.43145 5.46377 5.50771 5.51915 5.62806 5.66624 5.72765 5.94214 6.00219 6.32425 6.44241 6.65241 6.91388 7.46486 8.97707 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.003392 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.168256 B = 8253.945596 C = 9466.108718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.097 4.097 7 C 0.081 3.919 8 H 0.065 0.935 9 C -0.181 4.181 10 N -0.673 5.673 11 C 0.099 3.901 12 H 0.070 0.930 13 C -0.135 4.135 14 C -0.087 4.087 15 C 0.037 3.963 16 H -0.005 1.005 17 C -0.527 4.527 18 H 0.052 0.948 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.090 4.090 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.341 0.659 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.259 0.741 48 H 0.053 0.947 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -21.248 7.758 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.135 4.135 7 C -0.029 4.029 8 H 0.084 0.916 9 C -0.239 4.239 10 N -0.302 5.302 11 C -0.011 4.011 12 H 0.088 0.912 13 C -0.175 4.175 14 C -0.126 4.126 15 C 0.018 3.982 16 H 0.013 0.987 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.190 4.190 20 N -0.562 5.562 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.128 4.128 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.495 -21.202 7.890 22.759 hybrid contribution 0.845 1.463 -0.808 1.873 sum -1.650 -19.738 7.082 21.035 Atomic orbital electron populations 1.21798 0.95835 1.01880 1.01697 1.21530 0.95964 0.96497 1.02083 1.21619 0.95787 0.96960 1.01495 1.21565 0.95064 0.96595 1.01849 1.21441 0.95437 0.96340 1.01497 1.21511 0.95568 0.94491 1.01920 1.21698 0.93612 0.95797 0.91774 0.91627 1.22561 0.96750 1.01852 1.02779 1.60664 1.55865 1.06522 1.07197 1.22266 0.93879 0.86784 0.98166 0.91206 1.22870 0.97974 0.97203 0.99411 1.21837 0.98652 0.94783 0.97321 1.19442 0.92229 0.91940 0.94591 0.98658 1.21584 1.36191 0.97384 1.01406 0.92979 1.25791 0.95194 0.97828 1.00152 1.70109 1.40978 1.09436 1.35724 0.85585 0.77938 0.78388 0.80253 1.18998 1.20678 1.20663 1.22337 0.97380 0.95345 0.97729 0.92804 0.93136 0.92114 0.92069 0.91664 0.92473 0.93008 0.92247 0.91698 0.93343 0.92553 0.92004 0.90923 0.92111 0.93341 0.91196 0.83948 0.92439 0.91726 0.95458 0.95719 0.93210 0.92823 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.12 -2.09 5.21 30.59 0.16 -1.94 16 4 C -0.11 -1.94 5.21 30.59 0.16 -1.78 16 5 C -0.11 -2.26 5.10 30.60 0.16 -2.10 16 6 C -0.10 -1.84 4.89 30.59 0.15 -1.69 16 7 C 0.08 1.83 2.59 44.91 0.12 1.94 16 8 H 0.07 1.60 7.45 -2.39 -0.02 1.58 16 9 C -0.18 -3.65 8.97 71.98 0.65 -3.01 16 10 N -0.67 -18.57 5.58 -464.03 -2.59 -21.16 16 11 C 0.10 3.40 3.16 45.98 0.15 3.55 16 12 H 0.07 2.41 7.47 -2.39 -0.02 2.40 16 13 C -0.14 -4.87 5.01 31.32 0.16 -4.71 16 14 C -0.09 -4.17 5.60 31.32 0.18 -3.99 16 15 C 0.04 1.90 2.73 -10.46 -0.03 1.87 16 16 H 0.00 -0.28 8.14 -2.39 -0.02 -0.29 16 17 C -0.53 -29.95 8.36 25.60 0.21 -29.73 16 18 H 0.05 2.92 7.77 -2.91 -0.02 2.89 16 19 C 0.01 0.49 5.35 84.65 0.45 0.94 16 20 N -0.92 -55.23 12.63 21.45 0.27 -54.96 16 21 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 C -0.09 -3.77 5.96 31.88 0.19 -3.58 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.42 7.75 -2.39 -0.02 1.40 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 40 H 0.05 1.11 6.00 -2.39 -0.01 1.10 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.34 9.13 7.86 -89.69 -0.70 8.43 16 43 H 0.06 1.92 7.40 -2.39 -0.02 1.91 16 44 H 0.06 2.12 7.55 -2.39 -0.02 2.10 16 45 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 46 H 0.02 1.26 8.06 -2.39 -0.02 1.24 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.05 2.28 8.05 -2.39 -0.02 2.26 16 49 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -60.27 374.81 3.44 -56.83 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.15 Total: 19.83 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 3.59 Total: -47.29 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.32 Total: -76.12 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.27 3.44 -56.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824691164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.266 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds