Wall clock time and date at job start Mon Mar 30 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47103 * 270.00140 * 3 2 1 5 5 H 1.48497 * 109.47131 * 30.00337 * 3 2 1 6 6 H 1.48499 * 109.46986 * 150.00128 * 3 2 1 7 7 C 1.39858 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99687 * 198.02860 * 7 2 1 9 9 C 1.41271 * 120.00065 * 18.03608 * 7 2 1 10 10 C 1.39948 * 120.06041 * 24.86909 * 9 7 2 11 11 C 1.40473 * 119.98269 * 179.97438 * 10 9 7 12 12 C 1.45630 * 129.19514 * 180.02562 * 11 10 9 13 13 Cl 1.73603 * 122.56404 * 359.95846 * 12 11 10 14 14 C 1.31742 * 114.86950 * 179.97438 * 12 11 10 15 15 S 1.75255 * 111.52683 * 359.97438 * 14 12 11 16 16 C 1.40191 * 119.04007 * 0.02562 * 11 10 9 17 17 C 1.40432 * 120.16077 * 359.97438 * 16 11 10 18 18 C 1.50700 * 119.58524 * 180.02562 * 17 16 11 19 19 O 1.42905 * 109.47251 * 179.97438 * 18 17 16 20 20 C 1.35706 * 120.83198 * 0.27255 * 17 16 11 21 21 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.01241 * 359.95622 * 10 9 7 23 23 H 1.07999 * 124.23971 * 179.97438 * 14 12 11 24 24 H 1.08997 * 109.47114 * 59.99895 * 18 17 16 25 25 H 1.08999 * 109.47174 * 299.99925 * 18 17 16 26 26 H 0.96696 * 113.99577 * 179.97438 * 19 18 17 27 27 H 1.08001 * 119.95335 * 179.72833 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4401 0.7000 7 6 2.0082 -1.2112 -0.0005 8 1 3.0485 -1.2343 0.2889 9 6 1.3539 -2.4044 -0.3799 10 6 0.2375 -2.3544 -1.2223 11 6 -0.4116 -3.5419 -1.5989 12 6 -1.5751 -3.7228 -2.4558 13 17 -2.4031 -2.3912 -3.2007 14 6 -1.9513 -4.9744 -2.6222 15 16 -0.9147 -6.0800 -1.7421 16 6 0.0757 -4.7655 -1.1187 17 6 1.1973 -4.7958 -0.2742 18 6 1.7106 -6.1185 0.2340 19 8 2.8501 -5.8987 1.0679 20 6 1.8219 -3.6487 0.0940 21 1 -0.4850 0.8400 0.0004 22 1 -0.1252 -1.4030 -1.5826 23 1 -2.7932 -5.2808 -3.2254 24 1 1.9944 -6.7467 -0.6103 25 1 0.9290 -6.6146 0.8095 26 1 3.2334 -6.7086 1.4314 27 1 2.6807 -3.6881 0.7477 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396188964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:32 Heat of formation + Delta-G solvation = -45.046389 kcal Electronic energy + Delta-G solvation = -15457.636135 eV Core-core repulsion = 12717.223187 eV Total energy + Delta-G solvation = -2740.412948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 268.007 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16886 -38.06995 -37.40955 -36.21182 -34.78131 -32.09885 -30.37400 -27.48737 -26.63514 -24.01248 -22.43405 -21.20139 -18.92076 -18.54379 -17.94829 -17.04377 -16.46573 -15.99139 -15.89793 -15.60842 -14.84043 -14.60013 -14.52296 -13.96900 -13.38272 -13.14556 -12.90827 -12.85280 -12.60631 -12.41299 -12.05894 -11.93211 -11.61283 -11.55946 -11.27935 -11.23460 -10.83875 -9.88229 -9.29052 -8.67715 -8.41059 -6.33600 0.02332 0.52992 0.74070 1.04146 1.37546 1.40013 1.51649 1.53936 1.78169 2.19479 2.60803 3.41253 3.55955 3.79791 4.12036 4.38806 4.56805 4.58039 4.64616 4.84813 4.98686 5.15031 5.29191 5.50714 5.66869 5.79337 5.99935 6.16013 6.57153 6.84835 6.88193 7.02530 8.28837 Molecular weight = 268.01amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.008839 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.553605 B = 3166.901577 C = 4903.340621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.080 0.920 9 C 0.076 3.924 10 C -0.166 4.166 11 C -0.064 4.064 12 C -0.049 4.049 13 Cl -0.059 7.059 14 C -0.185 4.185 15 S 0.111 5.889 16 C -0.250 4.250 17 C -0.049 4.049 18 C 0.128 3.872 19 O -0.581 6.581 20 C -0.169 4.169 21 H 0.289 0.711 22 H 0.110 0.890 23 H 0.199 0.801 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.398 0.602 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -8.743 -2.628 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.517 4.517 8 H 0.098 0.902 9 C 0.073 3.927 10 C -0.188 4.188 11 C -0.070 4.070 12 C -0.090 4.090 13 Cl -0.031 7.031 14 C -0.319 4.319 15 S 0.370 5.630 16 C -0.364 4.364 17 C -0.054 4.054 18 C 0.051 3.949 19 O -0.389 6.389 20 C -0.190 4.190 21 H 0.100 0.900 22 H 0.128 0.872 23 H 0.216 0.784 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.249 0.751 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.851 -9.428 -2.688 9.977 hybrid contribution 0.154 2.116 -0.025 2.122 sum -1.697 -7.312 -2.713 7.982 Atomic orbital electron populations 1.69908 1.09001 1.30723 1.34492 1.26768 0.95468 1.04558 0.91245 0.85196 0.79181 0.75830 0.79526 1.18776 1.19198 1.17945 1.19800 0.98541 0.92225 1.41100 0.90171 1.17830 0.91948 0.93352 0.89597 1.21078 1.00182 0.95294 1.02280 1.18973 0.95101 0.94426 0.98522 1.20819 0.96796 0.89458 1.01941 1.98304 1.76770 1.47523 1.80506 1.25074 1.05996 0.94294 1.06522 1.82949 1.24521 1.06386 1.49116 1.21810 1.05491 0.96078 1.13001 1.18727 0.93962 0.95668 0.97030 1.20784 0.87989 0.92570 0.93584 1.86504 1.46360 1.37934 1.68151 1.20758 1.02820 0.91860 1.03515 0.90008 0.87173 0.78444 0.91094 0.91440 0.75140 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.22 10.98 21.81 0.24 -42.98 15 2 C 0.04 1.81 5.12 85.22 0.44 2.24 15 3 Si 0.98 38.48 29.60 68.60 2.03 40.51 15 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 15 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.49 -26.46 9.03 23.41 0.21 -26.25 15 8 H 0.08 4.19 7.91 -2.91 -0.02 4.17 15 9 C 0.08 4.19 5.56 -21.41 -0.12 4.07 15 10 C -0.17 -8.97 8.59 23.23 0.20 -8.78 15 11 C -0.06 -3.08 6.02 -20.35 -0.12 -3.21 15 12 C -0.05 -1.99 6.45 23.46 0.15 -1.84 15 13 Cl -0.06 -2.23 29.00 -2.72 -0.08 -2.31 15 14 C -0.18 -6.05 10.84 67.10 0.73 -5.32 15 15 S 0.11 3.59 22.91 -56.49 -1.29 2.29 15 16 C -0.25 -10.81 6.34 23.28 0.15 -10.66 15 17 C -0.05 -2.16 5.87 -19.92 -0.12 -2.28 15 18 C 0.13 4.14 7.10 71.24 0.51 4.65 15 19 O -0.58 -18.00 12.06 -148.98 -1.80 -19.80 15 20 C -0.17 -8.44 9.04 22.39 0.20 -8.24 15 21 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 22 H 0.11 6.26 6.15 -2.91 -0.02 6.24 15 23 H 0.20 4.87 8.06 -2.91 -0.02 4.84 15 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.40 7.13 9.12 -74.06 -0.68 6.45 15 27 H 0.11 5.57 6.91 -2.91 -0.02 5.55 15 Total: -1.00 -63.11 268.54 1.88 -61.23 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.55 Total: 16.66 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 2.22 Total: -55.61 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.24 Total: -42.98 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.80 Total: -19.80 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.29 Total: 2.29 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.31 kcal Total: -63.11 1.88 -61.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396188964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -63.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds