Wall clock time and date at job start Mon Mar 30 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99616 * 2 1 4 4 H 1.48496 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47287 * 59.99764 * 3 2 1 7 7 C 1.38658 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99638 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99442 * 185.05694 * 9 7 2 11 11 C 1.39000 * 119.99946 * 174.68760 * 10 9 7 12 12 C 1.38184 * 120.22205 * 180.27149 * 11 10 9 13 13 C 1.38052 * 120.21943 * 359.75298 * 12 11 10 14 14 C 1.39587 * 119.98939 * 359.97438 * 13 12 11 15 15 C 1.47782 * 120.10912 * 179.97438 * 14 13 12 16 16 C 1.32703 * 120.00167 * 0.02562 * 15 14 13 17 17 Br 1.89093 * 120.00134 * 180.02562 * 16 15 14 18 18 C 1.38609 * 120.00174 * 354.45084 * 10 9 7 19 19 H 0.96991 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.88723 * 0.02658 * 11 10 9 21 21 H 1.08007 * 119.89165 * 179.72312 * 12 11 10 22 22 H 1.07995 * 120.00732 * 179.97438 * 13 12 11 23 23 H 1.08007 * 120.00358 * 180.02562 * 15 14 13 24 24 H 1.07997 * 119.99466 * 0.02562 * 16 15 14 25 25 H 1.08000 * 120.10227 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 0.1077 11 6 1.4348 -4.7352 0.2254 12 6 2.1788 -5.8939 0.3404 13 6 3.5581 -5.8375 0.3340 14 6 4.2055 -4.6071 0.2106 15 6 5.6820 -4.5435 0.2041 16 6 6.3946 -5.6575 0.3151 17 35 8.2837 -5.5762 0.3075 18 6 3.4546 -3.4378 0.0948 19 1 -0.4850 0.8399 -0.0004 20 1 0.3559 -4.7855 0.2309 21 1 1.6795 -6.8469 0.4360 22 1 4.1362 -6.7452 0.4245 23 1 6.1812 -3.5905 0.1089 24 1 5.8954 -6.6105 0.4099 25 1 3.9500 -2.4828 0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685963697.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:28 Heat of formation + Delta-G solvation = 12.111483 kcal Electronic energy + Delta-G solvation = -12220.201008 eV Core-core repulsion = 9825.086055 eV Total energy + Delta-G solvation = -2395.114953 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 267.984 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16231 -36.87451 -34.08102 -32.30611 -30.88969 -29.29450 -27.95088 -25.34687 -22.61922 -21.73122 -19.48520 -17.82113 -17.17693 -15.27205 -15.23788 -14.44847 -14.16077 -13.73301 -13.49079 -13.13515 -12.47825 -12.10316 -11.79226 -11.58010 -11.29600 -10.96373 -10.92999 -10.70407 -10.46289 -10.10433 -9.49904 -9.47561 -8.88518 -7.88177 -7.34209 -6.51270 -4.11197 1.17258 1.83924 2.20365 2.76940 3.09684 3.10882 3.16187 3.91476 4.51263 4.96311 5.02494 5.15062 5.26055 5.59841 5.69689 5.96930 6.01013 6.23923 6.27694 6.61277 6.70481 6.97261 7.10728 7.21715 7.30946 7.65160 7.92431 8.94139 9.61861 10.66538 Molecular weight = 267.98amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004811 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.253864 B = 5818.078456 C = 6935.379865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.150 3.850 11 C -0.179 4.179 12 C -0.079 4.079 13 C -0.195 4.195 14 C -0.034 4.034 15 C -0.040 4.040 16 C -0.176 4.176 17 Br -0.086 7.086 18 C -0.207 4.207 19 H 0.270 0.730 20 H 0.120 0.880 21 H 0.116 0.884 22 H 0.110 0.890 23 H 0.125 0.875 24 H 0.147 0.853 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.994 -9.727 0.692 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.198 4.198 12 C -0.097 4.097 13 C -0.214 4.214 14 C -0.035 4.035 15 C -0.061 4.061 16 C -0.273 4.273 17 Br -0.002 7.002 18 C -0.227 4.227 19 H 0.080 0.920 20 H 0.138 0.862 21 H 0.134 0.866 22 H 0.128 0.872 23 H 0.143 0.857 24 H 0.165 0.835 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.253 -9.488 0.668 16.313 hybrid contribution 0.036 0.804 0.001 0.805 sum 13.290 -8.684 0.669 15.890 Atomic orbital electron populations 1.70040 1.05987 1.27707 1.45793 1.25296 0.95849 0.98869 0.96386 0.85646 0.79180 0.80288 0.78334 1.19024 1.20074 1.20060 1.21370 0.91825 0.80766 1.53117 0.88985 1.84001 1.34161 1.11390 1.78326 1.19265 0.90005 0.88299 0.92840 1.20373 0.99861 0.90330 1.09262 1.20586 0.93446 0.96950 0.98767 1.20723 0.94422 0.95996 1.10237 1.18536 0.90616 0.93606 1.00789 1.22136 0.93173 0.97740 0.93066 1.25302 0.88540 1.02114 1.11348 1.96626 1.06741 1.99191 1.97654 1.21294 0.93731 0.98074 1.09585 0.91963 0.86238 0.86606 0.87215 0.85691 0.83541 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.67 55.48 0.76 -24.07 15 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 15 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.28 -5.79 7.11 56.52 0.40 -5.38 15 7 C -0.39 -10.79 9.48 30.89 0.29 -10.50 15 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 15 9 O -0.18 -4.89 9.76 0.03 0.00 -4.89 15 10 C 0.15 3.51 6.64 -39.16 -0.26 3.25 15 11 C -0.18 -3.63 9.98 -39.32 -0.39 -4.03 15 12 C -0.08 -1.35 10.02 -39.67 -0.40 -1.75 15 13 C -0.19 -3.23 9.40 -39.15 -0.37 -3.59 15 14 C -0.03 -0.61 5.87 -105.04 -0.62 -1.22 15 15 C -0.04 -0.61 9.60 -37.57 -0.36 -0.97 15 16 C -0.18 -2.32 10.12 28.85 0.29 -2.03 15 17 Br -0.09 -1.04 33.88 -68.01 -2.30 -3.35 15 18 C -0.21 -4.37 8.90 -39.00 -0.35 -4.72 15 19 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 20 H 0.12 2.32 8.06 -52.48 -0.42 1.90 15 21 H 0.12 1.58 8.06 -52.48 -0.42 1.16 15 22 H 0.11 1.50 6.16 -52.49 -0.32 1.18 15 23 H 0.13 1.78 8.06 -52.48 -0.42 1.36 15 24 H 0.15 1.77 6.03 -52.49 -0.32 1.45 15 25 H 0.13 2.77 5.63 -52.49 -0.30 2.47 15 LS Contribution 249.21 15.07 3.76 3.76 Total: -1.00 -28.75 249.21 -6.68 -35.42 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -1.61 Total: 2.54 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.25 Total: -24.55 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.76 Total: -24.07 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.00 Total: -4.89 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -2.30 Total: -3.35 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.75 -6.68 -35.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685963697.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds