Wall clock time and date at job start Mon Mar 30 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99616 * 2 1 4 4 H 1.48496 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47287 * 59.99764 * 3 2 1 7 7 C 1.38658 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99638 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99442 * 185.05694 * 9 7 2 11 11 C 1.39000 * 119.99946 * 174.68760 * 10 9 7 12 12 C 1.38184 * 120.22205 * 180.27149 * 11 10 9 13 13 C 1.38052 * 120.21943 * 359.75298 * 12 11 10 14 14 C 1.39587 * 119.98939 * 359.97438 * 13 12 11 15 15 C 1.47782 * 120.10912 * 179.97438 * 14 13 12 16 16 C 1.32703 * 120.00167 * 0.02562 * 15 14 13 17 17 Br 1.89093 * 120.00134 * 180.02562 * 16 15 14 18 18 C 1.38609 * 120.00174 * 354.45084 * 10 9 7 19 19 H 0.96991 * 120.00241 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.88723 * 0.02658 * 11 10 9 21 21 H 1.08007 * 119.89165 * 179.72312 * 12 11 10 22 22 H 1.07995 * 120.00732 * 179.97438 * 13 12 11 23 23 H 1.08007 * 120.00358 * 180.02562 * 15 14 13 24 24 H 1.07997 * 119.99466 * 0.02562 * 16 15 14 25 25 H 1.08000 * 120.10227 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 0.1077 11 6 1.4348 -4.7352 0.2254 12 6 2.1788 -5.8939 0.3404 13 6 3.5581 -5.8375 0.3340 14 6 4.2055 -4.6071 0.2106 15 6 5.6820 -4.5435 0.2041 16 6 6.3946 -5.6575 0.3151 17 35 8.2837 -5.5762 0.3075 18 6 3.4546 -3.4378 0.0948 19 1 -0.4850 0.8399 -0.0004 20 1 0.3559 -4.7855 0.2309 21 1 1.6795 -6.8469 0.4360 22 1 4.1362 -6.7452 0.4245 23 1 6.1812 -3.5905 0.1089 24 1 5.8954 -6.6105 0.4099 25 1 3.9500 -2.4828 0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685963697.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:28 Heat of formation + Delta-G solvation = -4.480346 kcal Electronic energy + Delta-G solvation = -12220.920484 eV Core-core repulsion = 9825.086055 eV Total energy + Delta-G solvation = -2395.834429 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 267.984 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81215 -38.51763 -35.40673 -34.22109 -32.14913 -30.81839 -29.34711 -27.26348 -24.00329 -23.32058 -20.92032 -19.61146 -18.76808 -16.90179 -16.72393 -16.08867 -15.71290 -15.56033 -14.89696 -14.57850 -14.08691 -13.53742 -13.49070 -12.95864 -12.81809 -12.42203 -12.35879 -12.17338 -12.08396 -11.29964 -11.10416 -10.92435 -10.61374 -9.33429 -8.93598 -8.48574 -6.17365 -0.15941 0.67461 0.75526 1.34953 1.36507 1.46882 1.52909 2.16560 2.85035 3.17663 3.47808 3.84200 3.91729 4.18462 4.33943 4.45155 4.57898 4.95548 5.01440 5.10554 5.11018 5.23185 5.60534 5.64188 5.74198 6.00340 6.14140 6.96343 7.75821 8.74740 Molecular weight = 267.98amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004811 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.253864 B = 5818.078456 C = 6935.379865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.231 6.231 10 C 0.112 3.888 11 C -0.196 4.196 12 C -0.067 4.067 13 C -0.177 4.177 14 C -0.029 4.029 15 C -0.066 4.066 16 C -0.146 4.146 17 Br -0.070 7.070 18 C -0.225 4.225 19 H 0.273 0.727 20 H 0.117 0.883 21 H 0.161 0.839 22 H 0.155 0.845 23 H 0.127 0.873 24 H 0.168 0.832 25 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.652 -11.914 0.966 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.137 6.137 10 C 0.062 3.938 11 C -0.215 4.215 12 C -0.085 4.085 13 C -0.195 4.195 14 C -0.030 4.030 15 C -0.087 4.087 16 C -0.243 4.243 17 Br 0.015 6.985 18 C -0.245 4.245 19 H 0.082 0.918 20 H 0.135 0.865 21 H 0.178 0.822 22 H 0.172 0.828 23 H 0.145 0.855 24 H 0.185 0.815 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.955 -11.733 0.944 19.828 hybrid contribution -0.564 1.070 -0.058 1.212 sum 15.391 -10.663 0.886 18.745 Atomic orbital electron populations 1.70178 1.07995 1.28775 1.48841 1.26558 0.96827 1.02665 0.95820 0.84556 0.78290 0.74950 0.78605 1.17472 1.19312 1.19321 1.21840 0.92485 0.81453 1.53269 0.88152 1.83960 1.35766 1.12523 1.81500 1.19837 0.91279 0.88237 0.94486 1.20666 1.00361 0.90581 1.09918 1.21082 0.93804 0.97310 0.96259 1.21305 0.94599 0.96911 1.06706 1.18810 0.92201 0.92978 0.99053 1.21977 0.91628 0.98860 0.96245 1.25553 0.89439 1.02111 1.07213 1.96683 1.05239 1.99206 1.97376 1.21332 0.93107 0.99179 1.10843 0.91797 0.86472 0.82182 0.82802 0.85531 0.81519 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.17 13.67 21.61 0.30 -55.87 15 2 C -0.02 -1.19 5.49 84.83 0.47 -0.72 15 3 Si 1.02 42.65 29.55 68.60 2.03 44.68 15 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 15 7 C -0.41 -23.98 9.48 67.92 0.64 -23.34 15 8 H 0.10 5.35 5.20 -2.91 -0.02 5.33 15 9 O -0.23 -13.75 9.76 -22.81 -0.22 -13.98 15 10 C 0.11 5.47 6.64 22.54 0.15 5.62 15 11 C -0.20 -8.00 9.98 22.44 0.22 -7.77 15 12 C -0.07 -2.05 10.02 22.21 0.22 -1.83 15 13 C -0.18 -5.10 9.40 22.55 0.21 -4.89 15 14 C -0.03 -0.97 5.87 -20.14 -0.12 -1.09 15 15 C -0.07 -1.81 9.60 23.62 0.23 -1.58 15 16 C -0.15 -3.21 10.12 66.65 0.67 -2.53 15 17 Br -0.07 -1.43 33.88 -20.37 -0.69 -2.12 15 18 C -0.23 -9.68 8.90 22.65 0.20 -9.48 15 19 H 0.27 15.22 8.31 -92.72 -0.77 14.45 15 20 H 0.12 4.70 8.06 -2.91 -0.02 4.68 15 21 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 22 H 0.15 3.14 6.16 -2.91 -0.02 3.12 15 23 H 0.13 3.39 8.06 -2.91 -0.02 3.37 15 24 H 0.17 2.98 6.03 -2.91 -0.02 2.97 15 25 H 0.12 5.28 5.63 -2.91 -0.02 5.27 15 Total: -1.00 -66.99 249.21 5.53 -61.46 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.21 Total: 13.46 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 2.90 Total: -47.62 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.30 Total: -55.87 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.22 Total: -13.98 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -0.69 Total: -2.12 kcal Total: -66.99 5.53 -61.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685963697.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.981 kcal (2) G-P(sol) polarization free energy of solvation -66.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds