Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46718 * 2 1 4 4 C 1.52992 * 109.47114 * 240.00111 * 2 1 3 5 5 N 1.46906 * 109.47220 * 172.98162 * 4 2 1 6 6 C 1.46851 * 110.99663 * 287.63923 * 5 4 2 7 7 C 1.53034 * 109.52041 * 174.15959 * 6 5 4 8 8 C 1.53118 * 109.28108 * 59.18212 * 7 6 5 9 9 C 1.52999 * 109.52771 * 182.44151 * 8 7 6 10 10 C 1.50705 * 109.46697 * 294.68275 * 9 8 7 11 11 H 1.07999 * 120.00130 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99819 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00232 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00106 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47578 * 119.99945 * 14 12 10 17 17 H 1.48503 * 109.46966 * 240.00096 * 14 12 10 18 18 C 1.53123 * 109.15886 * 302.34395 * 8 7 6 19 19 C 1.46841 * 110.99931 * 163.43253 * 5 4 2 20 20 C 1.52995 * 109.47353 * 119.99797 * 2 1 3 21 21 C 1.52995 * 109.47293 * 62.26452 * 20 2 1 22 22 C 1.53001 * 109.47270 * 182.26400 * 20 2 1 23 23 C 1.53008 * 109.47354 * 302.26390 * 20 2 1 24 24 H 1.09001 * 109.47033 * 297.49059 * 1 2 3 25 25 H 1.08999 * 109.46944 * 177.49777 * 1 2 3 26 26 H 1.08988 * 109.47776 * 57.48906 * 1 2 3 27 27 H 1.08998 * 109.47095 * 292.97936 * 4 2 1 28 28 H 1.09002 * 109.47188 * 52.97896 * 4 2 1 29 29 H 1.08997 * 109.46433 * 294.17724 * 6 5 4 30 30 H 1.08996 * 109.46399 * 54.14842 * 6 5 4 31 31 H 1.08996 * 109.50788 * 299.23895 * 7 6 5 32 32 H 1.09003 * 109.53306 * 179.14003 * 7 6 5 33 33 H 1.09000 * 109.57420 * 62.27511 * 8 7 6 34 34 H 1.09001 * 109.47341 * 54.67670 * 9 8 7 35 35 H 1.08994 * 109.47121 * 174.68209 * 9 8 7 36 36 H 0.97000 * 120.00127 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.50484 * 297.71549 * 18 8 7 38 38 H 1.09003 * 109.53647 * 177.60938 * 18 8 7 39 39 H 1.08999 * 109.46700 * 305.84773 * 19 5 4 40 40 H 1.09000 * 109.46793 * 65.83628 * 19 5 4 41 41 H 1.09000 * 109.47062 * 59.99885 * 21 20 2 42 42 H 1.08997 * 109.47359 * 179.97438 * 21 20 2 43 43 H 1.08999 * 109.47180 * 299.99823 * 21 20 2 44 44 H 1.09006 * 109.47125 * 50.59438 * 22 20 2 45 45 H 1.09000 * 109.47283 * 170.59704 * 22 20 2 46 46 H 1.08998 * 109.47229 * 290.60079 * 22 20 2 47 47 H 1.08992 * 109.47127 * 59.99832 * 23 20 2 48 48 H 1.08997 * 109.47268 * 179.97438 * 23 20 2 49 49 H 1.08998 * 109.46592 * 300.00028 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4992 -0.5764 -1.3368 6 6 3.8704 0.7941 -1.7116 7 6 5.3920 0.9464 -1.6514 8 6 6.0389 -0.0576 -2.6096 9 6 7.5619 0.0478 -2.5090 10 6 8.0053 1.4011 -3.0023 11 1 7.2741 2.1143 -3.3528 12 6 9.3447 1.7281 -3.0070 13 7 10.2354 0.8594 -2.5807 14 14 9.8945 3.4052 -3.6191 15 1 8.7076 4.1916 -4.0411 16 1 10.6020 4.1227 -2.5284 17 1 10.8110 3.2342 -4.7750 18 6 5.5977 -1.4732 -2.2272 19 6 4.0700 -1.5553 -2.2707 20 6 2.0400 -0.7212 1.2492 21 6 1.5772 -2.1792 1.2211 22 6 3.5690 -0.6720 1.2780 23 6 1.4841 -0.0335 2.4979 24 1 -0.3633 0.4744 0.9116 25 1 -0.3633 -1.0267 -0.0449 26 1 -0.3634 0.5522 -0.8665 27 1 1.7828 -1.7787 -1.1886 28 1 1.5777 -0.2850 -2.1347 29 1 3.5246 0.9999 -2.7246 30 1 3.4074 1.4978 -1.0199 31 1 5.7371 0.7542 -0.6356 32 1 5.6688 1.9592 -1.9443 33 1 5.7254 0.1582 -3.6310 34 1 7.8671 -0.0781 -1.4702 35 1 8.0210 -0.7298 -3.1194 36 1 11.1777 1.0893 -2.5844 37 1 5.9459 -1.7034 -1.2203 38 1 6.0208 -2.1896 -2.9314 39 1 3.7521 -2.5580 -1.9851 40 1 3.7235 -1.3384 -3.2811 41 1 1.9732 -2.6690 0.3316 42 1 1.9409 -2.6931 2.1109 43 1 0.4879 -2.2142 1.2007 44 1 3.9023 0.3552 1.1299 45 1 3.9261 -1.0345 2.2419 46 1 3.9678 -1.3015 0.4826 47 1 0.3949 -0.0686 2.4774 48 1 1.8471 -0.5476 3.3878 49 1 1.8139 1.0051 2.5178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711170974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -31.484884 kcal Electronic energy + Delta-G solvation = -22151.150902 eV Core-core repulsion = 19304.748124 eV Total energy + Delta-G solvation = -2846.402778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65301 -37.57046 -34.23686 -32.32638 -31.11565 -30.32815 -28.33840 -27.26627 -26.84690 -25.18119 -23.39556 -22.73261 -21.68938 -20.54856 -18.88517 -17.98865 -16.22528 -15.75021 -15.66670 -14.54274 -14.48060 -14.40119 -14.00737 -13.52935 -13.49606 -13.28859 -12.94911 -12.64138 -12.33109 -12.08440 -11.96561 -11.87096 -11.70480 -11.63828 -11.33730 -11.22040 -11.11727 -10.95397 -10.72295 -10.60103 -10.57362 -10.33409 -10.25518 -10.15496 -10.08995 -9.84236 -9.46896 -8.98205 -8.82084 -8.29700 -7.80108 -5.94591 -3.95718 3.33252 3.40968 3.44546 4.14396 4.49940 4.70146 4.82372 4.96939 5.24942 5.31363 5.37099 5.40882 5.44306 5.48341 5.53305 5.59338 5.65670 5.70535 5.72826 5.83448 5.86259 5.90153 5.92711 5.97449 5.99451 6.02551 6.12851 6.15082 6.21138 6.29954 6.33093 6.36204 6.49309 6.53664 6.61846 6.67998 6.73938 7.03668 7.05687 7.16686 7.26128 7.44049 7.47487 7.74634 7.91625 8.06788 8.50112 9.11228 9.67688 11.16794 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.004126 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.538966 B = 6784.903374 C = 6902.323368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 H 0.070 0.930 4 C 0.055 3.945 5 N -0.524 5.524 6 C 0.054 3.946 7 C -0.098 4.098 8 C -0.080 4.080 9 C 0.028 3.972 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.887 3.113 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.111 4.111 19 C 0.057 3.943 20 C -0.053 4.053 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.144 4.144 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.258 0.742 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.029 0.971 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 -4.405 6.224 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.096 4.096 3 H 0.089 0.911 4 C -0.072 4.072 5 N -0.248 5.248 6 C -0.073 4.073 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.009 4.009 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.149 4.149 19 C -0.071 4.071 20 C -0.053 4.053 21 C -0.199 4.199 22 C -0.193 4.193 23 C -0.201 4.201 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.112 0.888 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.781 -4.520 6.701 20.447 hybrid contribution 0.075 1.149 -1.156 1.631 sum -18.706 -3.371 5.545 19.800 Atomic orbital electron populations 1.21932 0.95805 1.01658 1.01442 1.21180 0.94322 0.99688 0.94437 0.91128 1.22234 0.88267 1.00553 0.96193 1.62244 1.08891 1.04710 1.48980 1.22234 0.98158 0.89151 0.97758 1.21530 0.91320 1.00348 1.00413 1.21219 0.99219 0.92150 0.97327 1.19117 0.88050 0.96622 0.97117 1.21299 0.91858 1.00211 1.41702 0.92715 1.25013 0.96999 0.96824 0.95649 1.69978 1.01288 1.34695 1.47641 0.86614 0.78662 0.84708 0.78481 1.19824 1.21095 1.21150 1.21684 0.92771 0.98650 1.01763 1.22119 0.96581 0.94990 0.93372 1.20389 0.96946 0.94497 0.93505 1.21959 1.00198 0.96134 1.01591 1.22075 0.93113 1.03078 1.01076 1.21978 1.00276 1.00389 0.97485 0.92301 0.92620 0.93246 0.90864 0.95485 0.95777 0.91619 0.91851 0.91194 0.93231 0.96526 0.96873 0.93194 0.91636 0.92372 0.91847 0.95654 0.92341 0.93269 0.93287 0.93234 0.95221 0.88764 0.93027 0.93142 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.49 37.16 0.32 -1.02 16 2 C -0.08 -0.82 1.91 -90.63 -0.17 -0.99 16 3 H 0.07 0.83 6.46 -51.93 -0.34 0.50 16 4 C 0.06 0.64 4.08 -3.82 -0.02 0.62 16 5 N -0.52 -7.14 1.18 -234.67 -0.28 -7.42 16 6 C 0.05 0.83 5.19 -3.83 -0.02 0.81 16 7 C -0.10 -1.83 5.15 -26.65 -0.14 -1.97 16 8 C -0.08 -1.64 2.20 -90.50 -0.20 -1.84 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 10 C -0.51 -14.35 8.44 -34.44 -0.29 -14.64 16 11 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C -0.11 -1.90 5.38 -26.64 -0.14 -2.04 16 19 C 0.06 0.82 5.43 -3.83 -0.02 0.80 16 20 C -0.05 -0.57 0.57 -154.51 -0.09 -0.66 16 21 C -0.14 -1.39 7.76 37.16 0.29 -1.11 16 22 C -0.14 -1.75 7.30 37.16 0.27 -1.48 16 23 C -0.14 -1.41 8.05 37.16 0.30 -1.11 16 24 H 0.06 0.49 6.25 -51.93 -0.32 0.17 16 25 H 0.05 0.47 6.61 -51.93 -0.34 0.12 16 26 H 0.05 0.43 8.14 -51.94 -0.42 0.00 16 27 H 0.07 0.80 5.73 -51.93 -0.30 0.50 16 28 H 0.03 0.32 8.04 -51.93 -0.42 -0.10 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.93 6.42 -51.93 -0.33 0.60 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.41 7.05 -51.93 -0.37 1.04 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.81 7.95 -51.93 -0.41 0.39 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.60 6.23 -51.93 -0.32 0.28 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.43 6.54 -51.93 -0.34 0.09 16 44 H 0.05 0.70 8.01 -51.93 -0.42 0.28 16 45 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 47 H 0.05 0.45 6.33 -51.93 -0.33 0.12 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -28.62 353.91 -8.91 -37.53 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -9.55 Total: -3.29 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.14 Total: -22.54 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.46 Total: -33.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.62 -8.91 -37.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711170974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.043 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds