Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46718 * 2 1 4 4 C 1.52992 * 109.47114 * 240.00111 * 2 1 3 5 5 N 1.46906 * 109.47220 * 172.98162 * 4 2 1 6 6 C 1.46851 * 110.99663 * 287.63923 * 5 4 2 7 7 C 1.53034 * 109.52041 * 174.15959 * 6 5 4 8 8 C 1.53118 * 109.28108 * 59.18212 * 7 6 5 9 9 C 1.52999 * 109.52771 * 182.44151 * 8 7 6 10 10 C 1.50705 * 109.46697 * 294.68275 * 9 8 7 11 11 H 1.07999 * 120.00130 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99819 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00232 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00106 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47578 * 119.99945 * 14 12 10 17 17 H 1.48503 * 109.46966 * 240.00096 * 14 12 10 18 18 C 1.53123 * 109.15886 * 302.34395 * 8 7 6 19 19 C 1.46841 * 110.99931 * 163.43253 * 5 4 2 20 20 C 1.52995 * 109.47353 * 119.99797 * 2 1 3 21 21 C 1.52995 * 109.47293 * 62.26452 * 20 2 1 22 22 C 1.53001 * 109.47270 * 182.26400 * 20 2 1 23 23 C 1.53008 * 109.47354 * 302.26390 * 20 2 1 24 24 H 1.09001 * 109.47033 * 297.49059 * 1 2 3 25 25 H 1.08999 * 109.46944 * 177.49777 * 1 2 3 26 26 H 1.08988 * 109.47776 * 57.48906 * 1 2 3 27 27 H 1.08998 * 109.47095 * 292.97936 * 4 2 1 28 28 H 1.09002 * 109.47188 * 52.97896 * 4 2 1 29 29 H 1.08997 * 109.46433 * 294.17724 * 6 5 4 30 30 H 1.08996 * 109.46399 * 54.14842 * 6 5 4 31 31 H 1.08996 * 109.50788 * 299.23895 * 7 6 5 32 32 H 1.09003 * 109.53306 * 179.14003 * 7 6 5 33 33 H 1.09000 * 109.57420 * 62.27511 * 8 7 6 34 34 H 1.09001 * 109.47341 * 54.67670 * 9 8 7 35 35 H 1.08994 * 109.47121 * 174.68209 * 9 8 7 36 36 H 0.97000 * 120.00127 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.50484 * 297.71549 * 18 8 7 38 38 H 1.09003 * 109.53647 * 177.60938 * 18 8 7 39 39 H 1.08999 * 109.46700 * 305.84773 * 19 5 4 40 40 H 1.09000 * 109.46793 * 65.83628 * 19 5 4 41 41 H 1.09000 * 109.47062 * 59.99885 * 21 20 2 42 42 H 1.08997 * 109.47359 * 179.97438 * 21 20 2 43 43 H 1.08999 * 109.47180 * 299.99823 * 21 20 2 44 44 H 1.09006 * 109.47125 * 50.59438 * 22 20 2 45 45 H 1.09000 * 109.47283 * 170.59704 * 22 20 2 46 46 H 1.08998 * 109.47229 * 290.60079 * 22 20 2 47 47 H 1.08992 * 109.47127 * 59.99832 * 23 20 2 48 48 H 1.08997 * 109.47268 * 179.97438 * 23 20 2 49 49 H 1.08998 * 109.46592 * 300.00028 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4992 -0.5764 -1.3368 6 6 3.8704 0.7941 -1.7116 7 6 5.3920 0.9464 -1.6514 8 6 6.0389 -0.0576 -2.6096 9 6 7.5619 0.0478 -2.5090 10 6 8.0053 1.4011 -3.0023 11 1 7.2741 2.1143 -3.3528 12 6 9.3447 1.7281 -3.0070 13 7 10.2354 0.8594 -2.5807 14 14 9.8945 3.4052 -3.6191 15 1 8.7076 4.1916 -4.0411 16 1 10.6020 4.1227 -2.5284 17 1 10.8110 3.2342 -4.7750 18 6 5.5977 -1.4732 -2.2272 19 6 4.0700 -1.5553 -2.2707 20 6 2.0400 -0.7212 1.2492 21 6 1.5772 -2.1792 1.2211 22 6 3.5690 -0.6720 1.2780 23 6 1.4841 -0.0335 2.4979 24 1 -0.3633 0.4744 0.9116 25 1 -0.3633 -1.0267 -0.0449 26 1 -0.3634 0.5522 -0.8665 27 1 1.7828 -1.7787 -1.1886 28 1 1.5777 -0.2850 -2.1347 29 1 3.5246 0.9999 -2.7246 30 1 3.4074 1.4978 -1.0199 31 1 5.7371 0.7542 -0.6356 32 1 5.6688 1.9592 -1.9443 33 1 5.7254 0.1582 -3.6310 34 1 7.8671 -0.0781 -1.4702 35 1 8.0210 -0.7298 -3.1194 36 1 11.1777 1.0893 -2.5844 37 1 5.9459 -1.7034 -1.2203 38 1 6.0208 -2.1896 -2.9314 39 1 3.7521 -2.5580 -1.9851 40 1 3.7235 -1.3384 -3.2811 41 1 1.9732 -2.6690 0.3316 42 1 1.9409 -2.6931 2.1109 43 1 0.4879 -2.2142 1.2007 44 1 3.9023 0.3552 1.1299 45 1 3.9261 -1.0345 2.2419 46 1 3.9678 -1.3015 0.4826 47 1 0.3949 -0.0686 2.4774 48 1 1.8471 -0.5476 3.3878 49 1 1.8139 1.0051 2.5178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711170974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -43.821717 kcal Electronic energy + Delta-G solvation = -22151.685867 eV Core-core repulsion = 19304.748124 eV Total energy + Delta-G solvation = -2846.937743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72872 -38.75811 -35.86944 -34.16663 -32.16994 -31.65345 -29.87790 -28.19104 -27.90298 -26.50705 -24.91030 -24.06169 -22.83639 -22.01445 -20.41741 -18.85972 -18.41719 -16.96129 -16.61096 -16.46031 -15.61800 -15.41322 -15.11505 -14.90593 -14.71386 -14.48185 -14.30648 -13.97486 -13.74029 -13.34724 -13.22214 -12.96751 -12.85621 -12.77202 -12.64614 -12.57790 -12.41462 -12.30788 -12.14866 -12.00308 -11.87324 -11.84455 -11.65832 -11.26623 -11.16206 -11.09919 -10.97584 -10.74216 -10.63833 -10.50753 -8.90471 -8.17063 -6.26475 1.38722 1.39075 1.51920 2.41627 3.04155 3.16208 3.83676 3.96644 4.06258 4.11835 4.13393 4.18232 4.40272 4.48889 4.54431 4.60430 4.64802 4.67335 4.76088 4.77135 4.83578 4.86832 4.93475 4.94172 5.00457 5.04177 5.12082 5.14261 5.17527 5.19938 5.25717 5.29286 5.34643 5.36925 5.40603 5.45105 5.49537 5.54307 5.59806 5.65723 5.78276 5.83403 5.91265 5.99359 6.25696 6.30622 6.36994 6.89959 7.41893 8.95051 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.004126 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.538966 B = 6784.903374 C = 6902.323368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.057 0.943 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.067 3.933 7 C -0.091 4.091 8 C -0.073 4.073 9 C 0.034 3.966 10 C -0.528 4.528 11 H 0.058 0.942 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.959 3.041 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.105 4.105 19 C 0.065 3.935 20 C -0.051 4.051 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.142 4.142 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.044 0.956 34 H -0.013 1.013 35 H -0.016 1.016 36 H 0.261 0.739 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.679 -4.124 6.128 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.070 4.070 5 N -0.251 5.251 6 C -0.060 4.060 7 C -0.129 4.129 8 C -0.092 4.092 9 C -0.003 4.003 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.784 3.216 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.143 4.143 19 C -0.062 4.062 20 C -0.051 4.051 21 C -0.196 4.196 22 C -0.189 4.189 23 C -0.199 4.199 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.316 -4.241 6.606 22.716 hybrid contribution 0.905 1.026 -1.093 1.751 sum -20.411 -3.215 5.512 21.385 Atomic orbital electron populations 1.21889 0.94011 1.02444 1.01995 1.21147 0.95717 0.98675 0.93809 0.92454 1.22303 0.86293 1.01606 0.96768 1.62222 1.10751 1.03548 1.48617 1.22025 0.95145 0.90635 0.98242 1.21375 0.94115 0.98548 0.98812 1.21068 0.95474 0.95049 0.97610 1.19004 0.91853 0.95015 0.94403 1.21676 0.92300 1.01101 1.41500 0.92334 1.25941 0.97157 1.01010 0.95779 1.70114 1.01717 1.36969 1.48840 0.85481 0.78436 0.79661 0.77982 1.18617 1.20515 1.20519 1.21579 0.95469 0.96234 1.01003 1.22028 0.93912 0.96457 0.93848 1.20361 0.95152 0.95499 0.94124 1.21924 1.01145 0.95076 1.01410 1.22010 0.95101 1.01459 1.00332 1.21953 1.01190 0.99812 0.96956 0.91650 0.91658 0.92899 0.89530 0.95127 0.95649 0.90371 0.93276 0.93129 0.93759 0.99443 0.99734 0.92976 0.92621 0.92360 0.89399 0.95313 0.92645 0.93396 0.91740 0.95066 0.95586 0.90009 0.91495 0.93181 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.49 71.98 0.61 -1.49 16 2 C -0.07 -1.40 1.91 -10.80 -0.02 -1.42 16 3 H 0.06 1.24 6.46 -2.39 -0.02 1.23 16 4 C 0.06 1.17 4.08 86.30 0.35 1.52 16 5 N -0.53 -13.57 1.18 -896.37 -1.06 -14.63 16 6 C 0.07 1.98 5.19 86.32 0.45 2.43 16 7 C -0.09 -3.44 5.15 30.64 0.16 -3.29 16 8 C -0.07 -3.06 2.20 -10.71 -0.02 -3.09 16 9 C 0.03 1.85 4.45 29.85 0.13 1.98 16 10 C -0.53 -30.37 8.44 25.60 0.22 -30.16 16 11 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 12 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 13 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 14 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 C -0.10 -3.62 5.38 30.65 0.16 -3.46 16 19 C 0.07 1.75 5.43 86.33 0.47 2.22 16 20 C -0.05 -0.99 0.57 -52.18 -0.03 -1.02 16 21 C -0.14 -2.35 7.76 71.98 0.56 -1.79 16 22 C -0.13 -3.31 7.30 71.98 0.53 -2.79 16 23 C -0.14 -2.50 8.05 71.98 0.58 -1.92 16 24 H 0.06 0.87 6.25 -2.39 -0.01 0.86 16 25 H 0.06 0.83 6.61 -2.39 -0.02 0.82 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 1.58 5.73 -2.39 -0.01 1.56 16 28 H 0.03 0.62 8.04 -2.39 -0.02 0.61 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 2.13 6.42 -2.39 -0.02 2.12 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 2.08 7.05 -2.39 -0.02 2.07 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.09 1.98 7.95 -2.39 -0.02 1.96 16 40 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 0.97 6.23 -2.39 -0.01 0.96 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.90 6.54 -2.39 -0.02 0.89 16 44 H 0.03 0.87 8.01 -2.38 -0.02 0.85 16 45 H 0.03 0.64 8.12 -2.39 -0.02 0.62 16 46 H 0.08 2.26 5.88 -2.39 -0.01 2.25 16 47 H 0.07 0.97 6.33 -2.39 -0.02 0.96 16 48 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -63.02 353.91 6.72 -56.30 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.87 Total: 10.94 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 4.60 Total: -41.91 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -0.77 Total: -72.48 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.02 6.72 -56.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711170974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.474 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds