Wall clock time and date at job start Mon Mar 30 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 117.00297 * 2 1 4 4 C 1.38675 * 120.14596 * 0.02562 * 3 2 1 5 5 C 1.38080 * 120.10140 * 179.97438 * 4 3 2 6 6 C 1.50708 * 119.79315 * 180.02562 * 5 4 3 7 7 C 1.38800 * 120.40747 * 0.29432 * 5 4 3 8 8 Cl 1.73599 * 119.85090 * 179.72412 * 7 5 4 9 9 C 1.37799 * 120.29310 * 359.45082 * 7 5 4 10 10 C 1.50703 * 120.05566 * 180.27164 * 9 7 5 11 11 C 1.39838 * 119.89252 * 0.52671 * 9 7 5 12 12 C 1.47531 * 120.20207 * 179.77446 * 11 9 7 13 13 O 1.21811 * 120.00524 * 86.24268 * 12 11 9 14 14 C 1.41817 * 119.99681 * 266.24138 * 12 11 9 15 15 H 1.08009 * 119.99891 * 6.97024 * 14 12 11 16 16 C 1.40328 * 119.99994 * 186.96984 * 14 12 11 17 17 N 1.30534 * 119.99789 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99874 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47089 * 60.00142 * 18 16 14 20 20 H 1.48502 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47261 * 299.99961 * 18 16 14 22 22 H 1.09005 * 109.46768 * 299.99647 * 1 2 3 23 23 H 1.09002 * 109.46918 * 59.99768 * 1 2 3 24 24 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.94530 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.46575 * 89.99965 * 6 5 4 27 27 H 1.08995 * 109.46923 * 329.99853 * 6 5 4 28 28 H 1.08998 * 109.46748 * 209.99775 * 6 5 4 29 29 H 1.08998 * 109.47311 * 275.15701 * 10 9 7 30 30 H 1.09001 * 109.47042 * 35.16268 * 10 9 7 31 31 H 1.09000 * 109.46888 * 155.15423 * 10 9 7 32 32 H 0.97001 * 119.99672 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3736 0.0005 5 6 1.9205 3.6033 0.0011 6 6 1.0962 4.8650 0.0022 7 6 3.3061 3.6847 -0.0051 8 17 4.0805 5.2384 -0.0116 9 6 4.0698 2.5377 -0.0004 10 6 5.5739 2.6323 -0.0009 11 6 3.4469 1.2857 -0.0005 12 6 4.2579 0.0533 -0.0005 13 8 4.6504 -0.4176 1.0521 14 6 4.5805 -0.5832 -1.2261 15 1 4.3305 -0.1083 -2.1634 16 6 5.2244 -1.8300 -1.2210 17 7 5.5259 -2.4041 -0.0882 18 14 5.6499 -2.6680 -2.8353 19 1 6.5612 -1.7968 -3.6201 20 1 6.3209 -3.9635 -2.5587 21 1 4.4066 -2.9095 -3.6105 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2141 2.3188 0.0014 26 1 0.8980 5.1684 1.0302 27 1 0.1523 4.6827 -0.5113 28 1 1.6424 5.6562 -0.5113 29 1 5.9306 2.7430 -1.0249 30 1 5.8838 3.4960 0.5873 31 1 5.9950 1.7262 0.4346 32 1 5.9714 -3.2658 -0.0847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259151215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:29 Heat of formation + Delta-G solvation = -72.309143 kcal Electronic energy + Delta-G solvation = -18329.919756 eV Core-core repulsion = 15281.404830 eV Total energy + Delta-G solvation = -3048.514926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82933 -37.57742 -36.54258 -35.63437 -33.11440 -32.52189 -30.44026 -27.90745 -27.10450 -26.63086 -25.62365 -21.81252 -20.89779 -19.51789 -17.10349 -16.61470 -16.23068 -15.64476 -15.29631 -14.69290 -13.93434 -13.80359 -13.55775 -13.23535 -12.96887 -12.68211 -12.62245 -12.02266 -11.74583 -11.57083 -11.53549 -11.37100 -11.27759 -11.19648 -10.97920 -10.59188 -10.47171 -10.41638 -10.10304 -10.01903 -8.91548 -8.07757 -7.51619 -7.43552 -6.28409 -4.88088 1.70507 1.74944 2.58091 3.08513 3.14470 3.17188 3.76649 4.00486 4.09987 4.18252 5.00069 5.06358 5.27038 5.37032 5.42185 5.55080 5.68522 5.72919 5.74461 5.83598 5.87190 5.98007 6.13253 6.28634 6.50041 6.63401 6.71251 6.84352 6.95491 7.21830 7.28001 7.92284 8.10459 8.80709 8.84732 10.31519 10.53022 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.007081 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.572807 B = 3953.557857 C = 4780.614319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.151 3.849 4 C -0.213 4.213 5 C -0.055 4.055 6 C -0.112 4.112 7 C -0.077 4.077 8 Cl -0.085 7.085 9 C -0.022 4.022 10 C -0.115 4.115 11 C -0.112 4.112 12 C 0.412 3.588 13 O -0.533 6.533 14 C -0.515 4.515 15 H 0.069 0.931 16 C 0.084 3.916 17 N -0.740 5.740 18 Si 0.905 3.095 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 9.541 -2.279 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.203 6.203 3 C 0.105 3.895 4 C -0.232 4.232 5 C -0.056 4.056 6 C -0.168 4.168 7 C -0.103 4.103 8 Cl -0.057 7.057 9 C -0.023 4.023 10 C -0.171 4.171 11 C -0.115 4.115 12 C 0.307 3.693 13 O -0.422 6.422 14 C -0.547 4.547 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.369 5.369 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.115 0.885 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.284 9.136 -1.636 11.798 hybrid contribution -0.250 -0.068 -0.937 0.972 sum -7.533 9.068 -2.572 12.066 Atomic orbital electron populations 1.23023 0.79626 1.03612 1.00598 1.86248 1.20070 1.26265 1.87735 1.19150 0.91511 0.84009 0.94828 1.20837 0.99436 0.91110 1.11779 1.19333 0.91495 0.95110 0.99622 1.20790 0.98967 0.94716 1.02352 1.20375 0.91798 0.85322 1.12841 1.98280 1.81428 1.28632 1.97315 1.19569 0.96565 0.89497 0.96654 1.20821 0.90167 1.03529 1.02598 1.21064 0.91629 0.97818 1.00952 1.17767 0.79840 0.81343 0.90399 1.90547 1.52880 1.64280 1.34454 1.20739 1.36010 1.03569 0.94353 0.91311 1.25940 0.93639 0.97065 0.97221 1.69937 1.26515 1.13538 1.26870 0.86454 0.79522 0.78684 0.82423 1.18879 1.20260 1.18963 0.93169 0.93064 0.88511 0.85312 0.91158 0.91692 0.91035 0.90713 0.91600 0.89786 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.29 -6.24 9.95 -18.64 -0.19 -6.42 16 3 C 0.15 3.26 6.71 -38.60 -0.26 3.00 16 4 C -0.21 -3.69 8.67 -39.48 -0.34 -4.03 16 5 C -0.05 -0.91 5.89 -104.47 -0.62 -1.52 16 6 C -0.11 -1.39 9.61 36.01 0.35 -1.04 16 7 C -0.08 -1.41 6.30 -39.53 -0.25 -1.65 16 8 Cl -0.09 -1.31 25.67 -51.86 -1.33 -2.64 16 9 C -0.02 -0.46 5.92 -104.18 -0.62 -1.08 16 10 C -0.11 -2.28 9.19 36.01 0.33 -1.94 16 11 C -0.11 -2.74 5.53 -104.69 -0.58 -3.31 16 12 C 0.41 11.81 4.34 -34.43 -0.15 11.66 16 13 O -0.53 -17.25 15.58 5.09 0.08 -17.17 16 14 C -0.52 -14.51 9.23 -37.43 -0.35 -14.86 16 15 H 0.07 1.83 7.85 -52.48 -0.41 1.41 16 16 C 0.08 2.30 5.50 -17.32 -0.10 2.20 16 17 N -0.74 -21.44 11.76 55.57 0.65 -20.79 16 18 Si 0.91 19.62 29.56 -169.99 -5.03 14.60 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 23 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.13 1.79 6.30 -52.49 -0.33 1.46 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.07 0.86 6.87 -51.93 -0.36 0.50 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 31 H 0.08 1.91 6.83 -51.93 -0.35 1.55 16 32 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -33.28 291.62 -6.44 -39.72 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.44 Total: -0.48 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.58 Total: -11.20 kcal Atomic # 7 Polarization: -21.44 SS G_CDS: 0.65 Total: -20.79 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.11 Total: -23.59 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.60 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.33 Total: -2.64 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.28 -6.44 -39.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259151215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.592 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds