Wall clock time and date at job start Mon Mar 30 2020 07:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 117.00297 * 2 1 4 4 C 1.38675 * 120.14596 * 0.02562 * 3 2 1 5 5 C 1.38080 * 120.10140 * 179.97438 * 4 3 2 6 6 C 1.50708 * 119.79315 * 180.02562 * 5 4 3 7 7 C 1.38800 * 120.40747 * 0.29432 * 5 4 3 8 8 Cl 1.73599 * 119.85090 * 179.72412 * 7 5 4 9 9 C 1.37799 * 120.29310 * 359.45082 * 7 5 4 10 10 C 1.50703 * 120.05566 * 180.27164 * 9 7 5 11 11 C 1.39838 * 119.89252 * 0.52671 * 9 7 5 12 12 C 1.47531 * 120.20207 * 179.77446 * 11 9 7 13 13 O 1.21811 * 120.00524 * 86.24268 * 12 11 9 14 14 C 1.41817 * 119.99681 * 266.24138 * 12 11 9 15 15 H 1.08009 * 119.99891 * 6.97024 * 14 12 11 16 16 C 1.40328 * 119.99994 * 186.96984 * 14 12 11 17 17 N 1.30534 * 119.99789 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99874 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47089 * 60.00142 * 18 16 14 20 20 H 1.48502 * 109.47019 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47261 * 299.99961 * 18 16 14 22 22 H 1.09005 * 109.46768 * 299.99647 * 1 2 3 23 23 H 1.09002 * 109.46918 * 59.99768 * 1 2 3 24 24 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.94530 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.46575 * 89.99965 * 6 5 4 27 27 H 1.08995 * 109.46923 * 329.99853 * 6 5 4 28 28 H 1.08998 * 109.46748 * 209.99775 * 6 5 4 29 29 H 1.08998 * 109.47311 * 275.15701 * 10 9 7 30 30 H 1.09001 * 109.47042 * 35.16268 * 10 9 7 31 31 H 1.09000 * 109.46888 * 155.15423 * 10 9 7 32 32 H 0.97001 * 119.99672 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3736 0.0005 5 6 1.9205 3.6033 0.0011 6 6 1.0962 4.8650 0.0022 7 6 3.3061 3.6847 -0.0051 8 17 4.0805 5.2384 -0.0116 9 6 4.0698 2.5377 -0.0004 10 6 5.5739 2.6323 -0.0009 11 6 3.4469 1.2857 -0.0005 12 6 4.2579 0.0533 -0.0005 13 8 4.6504 -0.4176 1.0521 14 6 4.5805 -0.5832 -1.2261 15 1 4.3305 -0.1083 -2.1634 16 6 5.2244 -1.8300 -1.2210 17 7 5.5259 -2.4041 -0.0882 18 14 5.6499 -2.6680 -2.8353 19 1 6.5612 -1.7968 -3.6201 20 1 6.3209 -3.9635 -2.5587 21 1 4.4066 -2.9095 -3.6105 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2141 2.3188 0.0014 26 1 0.8980 5.1684 1.0302 27 1 0.1523 4.6827 -0.5113 28 1 1.6424 5.6562 -0.5113 29 1 5.9306 2.7430 -1.0249 30 1 5.8838 3.4960 0.5873 31 1 5.9950 1.7262 0.4346 32 1 5.9714 -3.2658 -0.0847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259151215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:28 Heat of formation + Delta-G solvation = -93.836036 kcal Electronic energy + Delta-G solvation = -18330.853232 eV Core-core repulsion = 15281.404830 eV Total energy + Delta-G solvation = -3049.448402 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33354 -39.08648 -38.47544 -37.04090 -34.86144 -34.40634 -31.91954 -29.56798 -28.55396 -28.12256 -27.21689 -23.41038 -22.46833 -21.21336 -18.86392 -18.20805 -17.76640 -17.55105 -16.69152 -16.38604 -15.34748 -15.23098 -15.05585 -14.89491 -14.64018 -14.12447 -14.03025 -13.50359 -13.32638 -13.11172 -12.93131 -12.90586 -12.73842 -12.67647 -12.52937 -12.43671 -12.11979 -12.10001 -11.57418 -11.35383 -10.98163 -9.66790 -9.56720 -8.95836 -8.35124 -7.10554 0.21244 0.26035 1.18563 1.34749 1.35654 1.50398 2.14293 2.20310 2.42747 2.55820 3.33035 3.71911 3.74258 4.08511 4.20235 4.31254 4.35975 4.39709 4.55212 4.64413 4.68862 4.71873 4.82480 4.85203 5.00006 5.16239 5.22255 5.25426 5.32675 5.42086 5.72486 5.95019 6.50657 6.70198 6.74099 8.21423 8.47669 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.007081 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.572807 B = 3953.557857 C = 4780.614319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.138 3.862 4 C -0.201 4.201 5 C -0.041 4.041 6 C -0.110 4.110 7 C -0.085 4.085 8 Cl -0.057 7.057 9 C -0.036 4.036 10 C -0.108 4.108 11 C -0.169 4.169 12 C 0.404 3.596 13 O -0.592 6.592 14 C -0.543 4.543 15 H 0.075 0.925 16 C 0.030 3.970 17 N -0.789 5.789 18 Si 0.990 3.010 19 H -0.252 1.252 20 H -0.264 1.264 21 H -0.254 1.254 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.171 0.829 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 11.483 -3.963 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.092 3.908 4 C -0.220 4.220 5 C -0.041 4.041 6 C -0.166 4.166 7 C -0.111 4.111 8 Cl -0.028 7.028 9 C -0.037 4.037 10 C -0.164 4.164 11 C -0.171 4.171 12 C 0.302 3.698 13 O -0.486 6.486 14 C -0.574 4.574 15 H 0.093 0.907 16 C -0.189 4.189 17 N -0.417 5.417 18 Si 0.808 3.192 19 H -0.175 1.175 20 H -0.188 1.188 21 H -0.178 1.178 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.128 0.872 25 H 0.188 0.812 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.312 11.106 -3.329 14.871 hybrid contribution 0.293 -0.562 -0.371 0.735 sum -9.019 10.544 -3.701 14.360 Atomic orbital electron populations 1.23414 0.76255 1.05418 1.02729 1.86176 1.23781 1.27122 1.87898 1.19325 0.90870 0.85498 0.95147 1.21205 1.01142 0.89646 1.09961 1.19934 0.91205 0.96797 0.96209 1.20925 0.99430 0.92271 1.04001 1.20443 0.92647 0.85651 1.12390 1.98284 1.81171 1.26151 1.97174 1.19652 0.96997 0.89823 0.97201 1.20749 0.90101 1.02335 1.03213 1.20728 0.93102 0.97022 1.06252 1.18224 0.79241 0.82632 0.89668 1.90470 1.55380 1.66652 1.36067 1.21180 1.36760 1.04711 0.94723 0.90673 1.27165 0.92593 0.97375 1.01780 1.70076 1.27225 1.14348 1.30099 0.85189 0.79782 0.77716 0.76493 1.17533 1.18820 1.17771 0.91100 0.90577 0.87164 0.81188 0.89319 0.88881 0.90378 0.89726 0.89267 0.93932 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -14.67 9.95 -89.61 -0.89 -15.57 16 3 C 0.14 5.99 6.71 22.90 0.15 6.15 16 4 C -0.20 -6.45 8.67 22.34 0.19 -6.25 16 5 C -0.04 -1.22 5.89 -19.76 -0.12 -1.34 16 6 C -0.11 -2.17 9.61 71.24 0.68 -1.49 16 7 C -0.08 -2.96 6.30 22.30 0.14 -2.82 16 8 Cl -0.06 -1.60 25.67 -2.72 -0.07 -1.67 16 9 C -0.04 -1.55 5.92 -19.58 -0.12 -1.67 16 10 C -0.11 -4.45 9.19 71.24 0.65 -3.79 16 11 C -0.17 -8.59 5.53 -19.91 -0.11 -8.70 16 12 C 0.40 24.70 4.34 25.61 0.11 24.81 16 13 O -0.59 -41.39 15.58 -4.70 -0.07 -41.46 16 14 C -0.54 -32.13 9.23 23.66 0.22 -31.92 16 15 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 16 C 0.03 1.68 5.50 85.39 0.47 2.15 16 17 N -0.79 -48.01 11.76 21.88 0.26 -47.76 16 18 Si 0.99 40.87 29.56 68.60 2.03 42.90 16 19 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 22 H 0.07 1.58 7.66 -2.38 -0.02 1.56 16 23 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 24 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.17 3.92 6.30 -2.91 -0.02 3.90 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 28 H 0.08 1.49 6.87 -2.39 -0.02 1.47 16 29 H 0.08 3.21 8.14 -2.39 -0.02 3.20 16 30 H 0.09 3.13 7.11 -2.39 -0.02 3.12 16 31 H 0.04 2.09 6.83 -2.39 -0.02 2.07 16 32 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -79.43 291.62 5.79 -73.63 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.15 Total: 13.26 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.40 Total: -23.34 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.26 Total: -47.76 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.96 Total: -57.03 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -79.43 5.79 -73.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259151215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.203 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds