Wall clock time and date at job start Mon Mar 30 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47208 * 300.00046 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99964 * 3 2 1 7 7 C 1.39938 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99836 * 199.06806 * 7 2 1 9 9 C 1.41408 * 119.99734 * 19.07062 * 7 2 1 10 10 C 1.40761 * 120.21814 * 22.81396 * 9 7 2 11 11 C 1.37629 * 119.85554 * 180.02562 * 10 9 7 12 12 C 1.38557 * 120.30959 * 359.74716 * 11 10 9 13 13 C 1.39126 * 120.44154 * 0.51119 * 12 11 10 14 14 O 1.35910 * 119.93492 * 179.76205 * 13 12 11 15 15 C 1.34724 * 117.00066 * 257.01911 * 14 13 12 16 16 O 1.21474 * 120.00419 * 357.57867 * 15 14 13 17 17 C 1.47713 * 119.99719 * 177.58063 * 15 14 13 18 18 C 1.39635 * 120.14890 * 180.02562 * 17 15 14 19 19 C 1.37938 * 119.84914 * 180.25404 * 18 17 15 20 20 C 1.38377 * 120.14987 * 359.42124 * 19 18 17 21 21 C 1.38368 * 120.30077 * 0.60292 * 20 19 18 22 22 C 1.37945 * 120.15260 * 359.68048 * 21 20 19 23 23 C 1.38155 * 120.13129 * 359.48738 * 13 12 11 24 24 H 0.97011 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.07141 * 0.04663 * 10 9 7 26 26 H 1.08000 * 119.84356 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.78354 * 180.27670 * 12 11 10 28 28 H 1.08003 * 120.07651 * 359.97438 * 18 17 15 29 29 H 1.08002 * 119.92854 * 179.69624 * 19 18 17 30 30 H 1.07994 * 119.84921 * 180.29738 * 20 19 18 31 31 H 1.08000 * 119.92349 * 179.69640 * 21 20 19 32 32 H 1.08001 * 120.07781 * 180.02562 * 22 21 20 33 33 H 1.08000 * 120.15134 * 180.23101 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0434 -1.2377 0.3050 9 6 1.3589 -2.4027 -0.4012 10 6 0.2230 -2.3459 -1.2305 11 6 -0.4031 -3.5095 -1.6156 12 6 0.0826 -4.7371 -1.1949 13 6 1.2012 -4.8077 -0.3707 14 8 1.6660 -6.0171 0.0397 15 6 1.3814 -6.3848 1.3041 16 8 0.7740 -5.6278 2.0347 17 6 1.8078 -7.7084 1.8021 18 6 1.5141 -8.0929 3.1120 19 6 1.9199 -9.3283 3.5722 20 6 2.6062 -10.1906 2.7355 21 6 2.9010 -9.8158 1.4366 22 6 2.5062 -8.5810 0.9651 23 6 1.8439 -3.6512 0.0267 24 1 -0.4851 0.8401 0.0004 25 1 -0.1562 -1.3913 -1.5643 26 1 -1.2744 -3.4657 -2.2522 27 1 -0.4127 -5.6451 -1.5058 28 1 0.9743 -7.4227 3.7646 29 1 1.6976 -9.6250 4.5866 30 1 2.9174 -11.1586 3.0994 31 1 3.4412 -10.4918 0.7903 32 1 2.7366 -8.2899 -0.0491 33 1 2.7145 -3.7058 0.6635 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003199119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:29 Heat of formation + Delta-G solvation = -34.035338 kcal Electronic energy + Delta-G solvation = -18726.978815 eV Core-core repulsion = 15682.556415 eV Total energy + Delta-G solvation = -3044.422400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53635 -38.92123 -37.25290 -35.95808 -33.53488 -31.49588 -31.07026 -29.97431 -28.64288 -25.41216 -24.56662 -22.70071 -21.71129 -20.93147 -20.06185 -18.07002 -17.65755 -16.33039 -15.90931 -15.67088 -15.26590 -14.81985 -14.65037 -14.56942 -13.62039 -13.54512 -13.45200 -12.87497 -12.65502 -12.36737 -11.73903 -11.71134 -11.47356 -11.23489 -11.12419 -10.89904 -10.59840 -10.38649 -10.14637 -9.95536 -9.42315 -9.16864 -9.12565 -9.10768 -7.60948 -7.39055 -6.83800 -4.43486 0.71894 1.24167 2.44361 2.73107 2.81553 3.05031 3.10193 3.14039 3.51989 3.79077 3.89548 4.52962 4.72454 4.78096 4.89760 5.15973 5.27140 5.40115 5.61489 5.71417 5.86222 6.18392 6.21999 6.27442 6.32044 6.32644 6.72574 6.80834 6.85164 6.91934 7.08029 7.18087 7.46107 7.68925 7.86891 7.93236 8.09141 8.40765 8.59913 8.80095 8.87527 10.10909 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.004055 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.551850 B = 6904.120453 C = 7259.838295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.162 4.162 11 C -0.093 4.093 12 C -0.240 4.240 13 C 0.096 3.904 14 O -0.293 6.293 15 C 0.492 3.508 16 O -0.483 6.483 17 C -0.112 4.112 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.064 4.064 23 C -0.218 4.218 24 H 0.282 0.718 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -13.915 2.708 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.181 4.181 11 C -0.112 4.112 12 C -0.260 4.260 13 C 0.056 3.944 14 O -0.208 6.208 15 C 0.337 3.663 16 O -0.369 6.369 17 C -0.114 4.114 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.111 4.111 21 C -0.153 4.153 22 C -0.082 4.082 23 C -0.238 4.238 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.156 0.844 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.313 -13.485 2.940 14.194 hybrid contribution 0.239 0.820 0.097 0.860 sum 3.551 -12.665 3.037 13.499 Atomic orbital electron populations 1.69842 1.07694 1.29391 1.34191 1.25945 0.94735 1.01518 0.92070 0.86224 0.81042 0.80636 0.78643 1.18275 1.19556 1.19883 1.19616 0.98715 0.91201 1.39118 0.90136 1.17435 0.91099 0.91273 0.88679 1.21447 0.99094 0.97215 1.00345 1.20525 0.98533 0.92331 0.99777 1.20267 0.99187 0.97157 1.09416 1.18259 0.96071 0.81117 0.98924 1.84507 1.70156 1.36660 1.29525 1.21461 0.77134 0.86744 0.80989 1.90870 1.36738 1.52750 1.56544 1.19283 1.03939 0.92669 0.95467 1.21345 0.96259 0.96209 0.93877 1.21111 0.99814 0.93899 1.00312 1.21410 0.96508 0.99344 0.93859 1.21167 1.01285 0.96601 0.96228 1.21577 0.93857 0.92812 0.99989 1.21056 1.04003 0.91766 1.06963 0.90696 0.85794 0.88428 0.88695 0.84434 0.85171 0.85576 0.85238 0.84228 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.92 55.55 0.61 -19.82 16 2 C 0.08 1.92 5.13 -17.35 -0.09 1.83 16 3 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.36 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.09 7.91 -52.49 -0.42 1.68 16 9 C 0.12 3.25 5.59 -106.85 -0.60 2.65 16 10 C -0.16 -4.27 8.71 -38.85 -0.34 -4.61 16 11 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 12 C -0.24 -5.75 9.99 -39.13 -0.39 -6.14 16 13 C 0.10 2.38 5.11 -39.28 -0.20 2.18 16 14 O -0.29 -6.36 9.27 -24.78 -0.23 -6.59 16 15 C 0.49 10.06 7.77 34.60 0.27 10.33 16 16 O -0.48 -11.52 15.92 -19.25 -0.31 -11.82 16 17 C -0.11 -1.75 5.87 -104.98 -0.62 -2.37 16 18 C -0.06 -0.79 9.60 -39.17 -0.38 -1.16 16 19 C -0.13 -1.36 10.03 -39.64 -0.40 -1.75 16 20 C -0.09 -0.84 10.04 -39.48 -0.40 -1.24 16 21 C -0.13 -1.33 10.03 -39.64 -0.40 -1.73 16 22 C -0.06 -0.82 9.62 -39.17 -0.38 -1.20 16 23 C -0.22 -5.76 9.36 -38.72 -0.36 -6.13 16 24 H 0.28 6.58 8.30 -40.81 -0.34 6.24 16 25 H 0.12 3.30 6.08 -52.49 -0.32 2.99 16 26 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 28 H 0.14 1.86 7.65 -52.48 -0.40 1.46 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.71 7.61 -52.49 -0.40 1.31 16 33 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -30.71 298.84 -8.67 -39.39 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.21 Total: 5.43 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -5.01 Total: -24.69 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.54 Total: -18.42 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.71 -8.67 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003199119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.352 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds