Wall clock time and date at job start Mon Mar 30 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47208 * 300.00046 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99964 * 3 2 1 7 7 C 1.39938 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99836 * 199.06806 * 7 2 1 9 9 C 1.41408 * 119.99734 * 19.07062 * 7 2 1 10 10 C 1.40761 * 120.21814 * 22.81396 * 9 7 2 11 11 C 1.37629 * 119.85554 * 180.02562 * 10 9 7 12 12 C 1.38557 * 120.30959 * 359.74716 * 11 10 9 13 13 C 1.39126 * 120.44154 * 0.51119 * 12 11 10 14 14 O 1.35910 * 119.93492 * 179.76205 * 13 12 11 15 15 C 1.34724 * 117.00066 * 257.01911 * 14 13 12 16 16 O 1.21474 * 120.00419 * 357.57867 * 15 14 13 17 17 C 1.47713 * 119.99719 * 177.58063 * 15 14 13 18 18 C 1.39635 * 120.14890 * 180.02562 * 17 15 14 19 19 C 1.37938 * 119.84914 * 180.25404 * 18 17 15 20 20 C 1.38377 * 120.14987 * 359.42124 * 19 18 17 21 21 C 1.38368 * 120.30077 * 0.60292 * 20 19 18 22 22 C 1.37945 * 120.15260 * 359.68048 * 21 20 19 23 23 C 1.38155 * 120.13129 * 359.48738 * 13 12 11 24 24 H 0.97011 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.07141 * 0.04663 * 10 9 7 26 26 H 1.08000 * 119.84356 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.78354 * 180.27670 * 12 11 10 28 28 H 1.08003 * 120.07651 * 359.97438 * 18 17 15 29 29 H 1.08002 * 119.92854 * 179.69624 * 19 18 17 30 30 H 1.07994 * 119.84921 * 180.29738 * 20 19 18 31 31 H 1.08000 * 119.92349 * 179.69640 * 21 20 19 32 32 H 1.08001 * 120.07781 * 180.02562 * 22 21 20 33 33 H 1.08000 * 120.15134 * 180.23101 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0434 -1.2377 0.3050 9 6 1.3589 -2.4027 -0.4012 10 6 0.2230 -2.3459 -1.2305 11 6 -0.4031 -3.5095 -1.6156 12 6 0.0826 -4.7371 -1.1949 13 6 1.2012 -4.8077 -0.3707 14 8 1.6660 -6.0171 0.0397 15 6 1.3814 -6.3848 1.3041 16 8 0.7740 -5.6278 2.0347 17 6 1.8078 -7.7084 1.8021 18 6 1.5141 -8.0929 3.1120 19 6 1.9199 -9.3283 3.5722 20 6 2.6062 -10.1906 2.7355 21 6 2.9010 -9.8158 1.4366 22 6 2.5062 -8.5810 0.9651 23 6 1.8439 -3.6512 0.0267 24 1 -0.4851 0.8401 0.0004 25 1 -0.1562 -1.3913 -1.5643 26 1 -1.2744 -3.4657 -2.2522 27 1 -0.4127 -5.6451 -1.5058 28 1 0.9743 -7.4227 3.7646 29 1 1.6976 -9.6250 4.5866 30 1 2.9174 -11.1586 3.0994 31 1 3.4412 -10.4918 0.7903 32 1 2.7366 -8.2899 -0.0491 33 1 2.7145 -3.7058 0.6635 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003199119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:20 Heat of formation + Delta-G solvation = -49.401436 kcal Electronic energy + Delta-G solvation = -18727.645139 eV Core-core repulsion = 15682.556415 eV Total energy + Delta-G solvation = -3045.088724 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18055 -40.06625 -39.02133 -37.75206 -35.47826 -32.57419 -31.97852 -31.96100 -30.51159 -27.40591 -25.94511 -23.72194 -23.12412 -22.88743 -21.70850 -19.76667 -19.09020 -18.02454 -17.49305 -17.18970 -16.90316 -16.56885 -15.97303 -15.58845 -15.31292 -15.06349 -14.59135 -14.40681 -14.22952 -13.76000 -13.59660 -13.32290 -12.86583 -12.79289 -12.66608 -12.49644 -12.15066 -12.08077 -11.95107 -11.69603 -11.33427 -11.08195 -10.08144 -10.00886 -9.61960 -9.37883 -8.75899 -6.48991 -0.36878 0.36720 0.55483 0.81725 1.35909 1.44157 1.44637 1.53055 1.87623 2.17573 2.60839 2.78670 3.50878 3.65312 3.90075 3.98723 4.20593 4.27598 4.41852 4.43135 4.45369 4.77535 4.82715 4.91725 5.00501 5.06013 5.10042 5.21481 5.31249 5.41321 5.44938 5.58697 5.73975 5.88981 5.89673 5.92299 6.12872 6.46910 6.69452 6.78955 6.92252 8.22290 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.004055 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.551850 B = 6904.120453 C = 7259.838295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.092 3.908 10 C -0.185 4.185 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.095 3.905 14 O -0.292 6.292 15 C 0.491 3.509 16 O -0.531 6.531 17 C -0.146 4.146 18 C -0.074 4.074 19 C -0.127 4.127 20 C -0.073 4.073 21 C -0.127 4.127 22 C -0.071 4.071 23 C -0.247 4.247 24 H 0.294 0.706 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.138 0.862 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 -16.054 2.949 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.188 1.188 7 C -0.523 4.523 8 H 0.094 0.906 9 C 0.089 3.911 10 C -0.204 4.204 11 C -0.106 4.106 12 C -0.265 4.265 13 C 0.055 3.945 14 O -0.207 6.207 15 C 0.339 3.661 16 O -0.421 6.421 17 C -0.147 4.147 18 C -0.092 4.092 19 C -0.145 4.145 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.089 4.089 23 C -0.267 4.267 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.156 0.844 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.981 -15.659 3.172 16.466 hybrid contribution 0.031 1.263 0.086 1.266 sum 4.012 -14.397 3.258 15.296 Atomic orbital electron populations 1.69867 1.09177 1.31160 1.33798 1.26872 0.95568 1.04788 0.90764 0.85045 0.79249 0.75380 0.79337 1.18215 1.18047 1.18847 1.19884 0.98937 0.92535 1.40991 0.90571 1.17803 0.91981 0.91946 0.89344 1.21476 0.99645 0.97876 1.01414 1.20889 0.98983 0.91545 0.99189 1.20626 0.98824 0.98302 1.08795 1.18417 0.95846 0.81735 0.98500 1.84495 1.70287 1.35199 1.30711 1.22441 0.75891 0.88138 0.79662 1.90831 1.39365 1.54605 1.57255 1.19184 1.07507 0.90889 0.97149 1.21426 0.97048 0.97794 0.92922 1.21495 0.98730 0.92244 1.01991 1.21974 0.93721 1.00428 0.92895 1.21588 1.00248 0.95410 0.97224 1.21687 0.93756 0.93784 0.99698 1.21110 1.04714 0.92636 1.08222 0.89514 0.86476 0.84957 0.85933 0.85878 0.81973 0.81122 0.81685 0.84445 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.19 10.92 21.82 0.24 -42.96 16 2 C 0.04 1.88 5.13 85.26 0.44 2.31 16 3 Si 0.99 38.51 29.60 68.60 2.03 40.54 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -28.05 9.05 23.46 0.21 -27.83 16 8 H 0.08 4.20 7.91 -2.91 -0.02 4.17 16 9 C 0.09 5.33 5.59 -21.30 -0.12 5.21 16 10 C -0.18 -10.11 8.71 22.74 0.20 -9.91 16 11 C -0.09 -4.26 10.02 22.20 0.22 -4.03 16 12 C -0.25 -11.87 9.99 22.56 0.23 -11.65 16 13 C 0.10 4.91 5.11 22.46 0.11 5.03 16 14 O -0.29 -13.20 9.27 0.10 0.00 -13.20 16 15 C 0.49 21.15 7.77 70.33 0.55 21.70 16 16 O -0.53 -27.06 15.92 19.92 0.32 -26.75 16 17 C -0.15 -4.64 5.87 -20.10 -0.12 -4.76 16 18 C -0.07 -1.96 9.60 22.54 0.22 -1.74 16 19 C -0.13 -2.17 10.03 22.23 0.22 -1.94 16 20 C -0.07 -0.95 10.04 22.33 0.22 -0.73 16 21 C -0.13 -2.01 10.03 22.23 0.22 -1.79 16 22 C -0.07 -1.74 9.62 22.54 0.22 -1.52 16 23 C -0.25 -13.88 9.36 22.83 0.21 -13.67 16 24 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 25 H 0.12 6.46 6.08 -2.91 -0.02 6.44 16 26 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 27 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.12 3.53 7.65 -2.91 -0.02 3.50 16 29 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 31 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.14 3.31 7.61 -2.91 -0.02 3.29 16 33 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -71.66 298.84 6.75 -64.91 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.13 Total: 22.77 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.04 Total: -45.32 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.24 Total: -42.96 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: 0.32 Total: -39.95 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -71.66 6.75 -64.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003199119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.508 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds