Wall clock time and date at job start Mon Mar 30 2020 07:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48494 * 109.46857 * 239.99897 * 3 2 1 5 5 H 1.48494 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46829 * 120.00245 * 3 2 1 7 7 C 1.39895 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99698 * 178.78228 * 7 2 1 9 9 C 1.41184 * 120.00182 * 358.78156 * 7 2 1 10 10 C 1.40840 * 120.17901 * 33.52907 * 9 7 2 11 11 C 1.36420 * 119.81825 * 180.02562 * 10 9 7 12 12 C 1.39351 * 120.17934 * 0.02562 * 11 10 9 13 13 O 1.35636 * 119.82153 * 179.97438 * 12 11 10 14 14 C 1.35557 * 118.00334 * 185.72676 * 13 12 11 15 15 C 1.38731 * 120.17269 * 267.92831 * 14 13 12 16 16 C 1.38044 * 120.10573 * 180.23129 * 15 14 13 17 17 C 1.38635 * 120.45899 * 359.48453 * 16 15 14 18 18 C 1.37691 * 120.34242 * 0.51840 * 17 16 15 19 19 C 1.40000 * 119.88821 * 359.73768 * 18 17 16 20 20 C 1.46784 * 120.22450 * 180.02562 * 19 18 17 21 21 O 1.21306 * 119.99585 * 179.97438 * 20 19 18 22 22 C 1.39356 * 120.35761 * 0.24930 * 12 11 10 23 23 C 1.36409 * 120.18340 * 359.45377 * 22 12 11 24 24 H 0.97006 * 119.99626 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.09485 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.90893 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.95152 * 359.95469 * 15 14 13 28 28 H 1.08003 * 119.77562 * 179.74481 * 16 15 14 29 29 H 1.08000 * 119.83152 * 180.25728 * 17 16 15 30 30 H 1.08005 * 120.05551 * 179.76864 * 18 17 16 31 31 H 1.07998 * 120.00364 * 359.97438 * 20 19 18 32 32 H 1.08001 * 119.90441 * 179.72470 * 22 12 11 33 33 H 1.07995 * 120.09500 * 180.27101 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0881 -1.2117 -0.0193 9 6 1.3025 -2.4341 0.0271 10 6 0.0574 -2.5470 -0.6214 11 6 -0.6185 -3.7317 -0.5906 12 6 -0.0804 -4.8280 0.0805 13 8 -0.7588 -6.0022 0.1069 14 6 -0.2609 -7.0079 0.8672 15 6 0.6017 -7.9413 0.3110 16 6 1.1041 -8.9677 1.0853 17 6 0.7616 -9.0700 2.4248 18 6 -0.0931 -8.1540 2.9961 19 6 -0.6153 -7.1103 2.2228 20 6 -1.5266 -6.1294 2.8244 21 8 -1.9763 -5.2264 2.1507 22 6 1.1484 -4.7228 0.7295 23 6 1.8396 -3.5471 0.7030 24 1 -0.4850 0.8401 0.0004 25 1 -0.3617 -1.6979 -1.1409 26 1 -1.5731 -3.8200 -1.0877 27 1 0.8771 -7.8673 -0.7307 28 1 1.7720 -9.6937 0.6457 29 1 1.1639 -9.8747 3.0223 30 1 -0.3598 -8.2403 4.0391 31 1 -1.7967 -6.2116 3.8669 32 1 1.5565 -5.5759 1.2511 33 1 2.7937 -3.4685 1.2027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020079519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:37 Heat of formation + Delta-G solvation = -11.360012 kcal Electronic energy + Delta-G solvation = -19310.269379 eV Core-core repulsion = 16266.830255 eV Total energy + Delta-G solvation = -3043.439124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.42467 -38.24696 -37.68458 -36.41536 -33.28659 -31.40855 -30.43166 -29.38194 -28.91588 -25.19260 -24.44895 -22.73399 -21.43596 -20.87647 -20.22097 -17.76820 -17.29525 -16.81075 -15.98781 -15.54621 -15.16798 -14.66085 -14.41498 -13.92951 -13.85717 -13.78612 -13.00816 -12.76960 -12.67014 -12.23581 -12.14222 -11.79844 -11.58081 -11.36822 -11.18789 -10.99227 -10.71994 -10.03420 -9.83174 -9.38504 -9.35550 -9.09364 -9.00393 -8.55795 -7.60627 -6.90136 -6.56601 -4.27877 0.72393 1.27513 2.68123 2.82337 2.98736 3.11905 3.14329 3.22987 3.64928 4.01555 4.25714 4.37501 4.72308 4.78896 4.93028 5.13212 5.38462 5.52907 5.64795 5.66980 5.88871 6.10583 6.16549 6.22722 6.36216 6.45958 6.63869 6.86173 7.01313 7.15184 7.26125 7.57385 7.62440 7.76342 7.79051 8.05723 8.27967 8.53845 8.70873 8.96753 9.02008 10.36377 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004772 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.017993 B = 5865.775378 C = 6073.471778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.086 3.914 10 C -0.122 4.122 11 C -0.113 4.113 12 C 0.016 3.984 13 O -0.266 6.266 14 C 0.175 3.825 15 C -0.151 4.151 16 C -0.078 4.078 17 C -0.149 4.149 18 C -0.062 4.062 19 C -0.210 4.210 20 C 0.363 3.637 21 O -0.417 6.417 22 C -0.167 4.167 23 C -0.187 4.187 24 H 0.278 0.722 25 H 0.136 0.864 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -13.754 4.843 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.083 3.917 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.024 4.024 13 O -0.180 6.180 14 C 0.130 3.870 15 C -0.169 4.169 16 C -0.096 4.096 17 C -0.167 4.167 18 C -0.081 4.081 19 C -0.211 4.211 20 C 0.218 3.782 21 O -0.287 6.287 22 C -0.186 4.186 23 C -0.207 4.207 24 H 0.089 0.911 25 H 0.153 0.847 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.115 -13.071 4.357 13.779 hybrid contribution 0.591 0.516 0.352 0.859 sum 0.476 -12.555 4.709 13.418 Atomic orbital electron populations 1.69754 1.07207 1.28757 1.38527 1.25843 0.94919 1.01016 0.92702 0.86271 0.79773 0.80335 0.79650 1.19110 1.20447 1.19232 1.19379 0.94338 0.90055 1.45866 0.90822 1.17635 0.92501 0.92106 0.89409 1.21207 0.97024 0.95184 1.00777 1.19869 0.99508 0.91359 1.02475 1.18605 0.92795 0.83940 1.07072 1.83955 1.50340 1.19988 1.63685 1.18973 0.90742 0.88786 0.88462 1.21515 0.97538 0.96325 1.01538 1.21219 0.97819 0.96692 0.93893 1.21060 1.00010 1.00236 0.95413 1.21248 0.94867 0.92642 0.99299 1.21499 1.04623 1.00598 0.94391 1.23783 0.78771 0.82348 0.93271 1.90682 1.43805 1.29005 1.65159 1.20394 0.95656 0.98360 1.04142 1.20653 1.01000 0.94108 1.04941 0.91093 0.84665 0.88332 0.84863 0.85389 0.85486 0.84947 0.88588 0.89096 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.88 10.62 55.55 0.59 -21.29 16 2 C 0.07 1.81 5.40 -17.34 -0.09 1.71 16 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.34 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.66 9.04 -37.84 -0.34 -13.00 16 8 H 0.07 1.91 7.85 -52.48 -0.41 1.50 16 9 C 0.09 2.35 5.55 -106.80 -0.59 1.76 16 10 C -0.12 -3.32 8.61 -39.25 -0.34 -3.66 16 11 C -0.11 -2.89 9.92 -39.82 -0.40 -3.28 16 12 C 0.02 0.39 5.51 -38.75 -0.21 0.18 16 13 O -0.27 -5.86 8.52 -23.64 -0.20 -6.06 16 14 C 0.17 3.13 3.99 -38.55 -0.15 2.98 16 15 C -0.15 -2.23 9.75 -39.47 -0.38 -2.62 16 16 C -0.08 -0.88 10.03 -39.51 -0.40 -1.28 16 17 C -0.15 -1.53 10.02 -39.63 -0.40 -1.92 16 18 C -0.06 -0.70 9.79 -39.12 -0.38 -1.08 16 19 C -0.21 -3.23 5.88 -104.94 -0.62 -3.85 16 20 C 0.36 5.80 11.44 34.18 0.39 6.20 16 21 O -0.42 -8.95 15.08 -16.37 -0.25 -9.20 16 22 C -0.17 -3.95 9.13 -39.82 -0.36 -4.31 16 23 C -0.19 -4.76 9.74 -39.25 -0.38 -5.14 16 24 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 25 H 0.14 3.76 6.15 -52.48 -0.32 3.44 16 26 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 27 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.09 1.96 6.64 -52.49 -0.35 1.61 16 33 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 294.22 15.07 4.43 4.43 Total: -1.00 -31.85 294.22 -8.29 -40.14 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.18 Total: 4.95 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -4.66 Total: -27.32 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.59 Total: -21.29 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.45 Total: -15.26 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.85 -8.29 -40.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.780 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds