Wall clock time and date at job start Mon Mar 30 2020 07:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48494 * 109.46857 * 239.99897 * 3 2 1 5 5 H 1.48494 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46829 * 120.00245 * 3 2 1 7 7 C 1.39895 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99698 * 178.78228 * 7 2 1 9 9 C 1.41184 * 120.00182 * 358.78156 * 7 2 1 10 10 C 1.40840 * 120.17901 * 33.52907 * 9 7 2 11 11 C 1.36420 * 119.81825 * 180.02562 * 10 9 7 12 12 C 1.39351 * 120.17934 * 0.02562 * 11 10 9 13 13 O 1.35636 * 119.82153 * 179.97438 * 12 11 10 14 14 C 1.35557 * 118.00334 * 185.72676 * 13 12 11 15 15 C 1.38731 * 120.17269 * 267.92831 * 14 13 12 16 16 C 1.38044 * 120.10573 * 180.23129 * 15 14 13 17 17 C 1.38635 * 120.45899 * 359.48453 * 16 15 14 18 18 C 1.37691 * 120.34242 * 0.51840 * 17 16 15 19 19 C 1.40000 * 119.88821 * 359.73768 * 18 17 16 20 20 C 1.46784 * 120.22450 * 180.02562 * 19 18 17 21 21 O 1.21306 * 119.99585 * 179.97438 * 20 19 18 22 22 C 1.39356 * 120.35761 * 0.24930 * 12 11 10 23 23 C 1.36409 * 120.18340 * 359.45377 * 22 12 11 24 24 H 0.97006 * 119.99626 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.09485 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.90893 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.95152 * 359.95469 * 15 14 13 28 28 H 1.08003 * 119.77562 * 179.74481 * 16 15 14 29 29 H 1.08000 * 119.83152 * 180.25728 * 17 16 15 30 30 H 1.08005 * 120.05551 * 179.76864 * 18 17 16 31 31 H 1.07998 * 120.00364 * 359.97438 * 20 19 18 32 32 H 1.08001 * 119.90441 * 179.72470 * 22 12 11 33 33 H 1.07995 * 120.09500 * 180.27101 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0881 -1.2117 -0.0193 9 6 1.3025 -2.4341 0.0271 10 6 0.0574 -2.5470 -0.6214 11 6 -0.6185 -3.7317 -0.5906 12 6 -0.0804 -4.8280 0.0805 13 8 -0.7588 -6.0022 0.1069 14 6 -0.2609 -7.0079 0.8672 15 6 0.6017 -7.9413 0.3110 16 6 1.1041 -8.9677 1.0853 17 6 0.7616 -9.0700 2.4248 18 6 -0.0931 -8.1540 2.9961 19 6 -0.6153 -7.1103 2.2228 20 6 -1.5266 -6.1294 2.8244 21 8 -1.9763 -5.2264 2.1507 22 6 1.1484 -4.7228 0.7295 23 6 1.8396 -3.5471 0.7030 24 1 -0.4850 0.8401 0.0004 25 1 -0.3617 -1.6979 -1.1409 26 1 -1.5731 -3.8200 -1.0877 27 1 0.8771 -7.8673 -0.7307 28 1 1.7720 -9.6937 0.6457 29 1 1.1639 -9.8747 3.0223 30 1 -0.3598 -8.2403 4.0391 31 1 -1.7967 -6.2116 3.8669 32 1 1.5565 -5.5759 1.2511 33 1 2.7937 -3.4685 1.2027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020079519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:33 Heat of formation + Delta-G solvation = -28.661560 kcal Electronic energy + Delta-G solvation = -19311.019630 eV Core-core repulsion = 16266.830255 eV Total energy + Delta-G solvation = -3044.189375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80264 -39.80902 -38.99353 -38.08016 -35.22504 -32.45290 -32.00987 -31.16384 -30.61450 -27.00657 -25.70393 -24.00618 -22.97610 -22.73918 -21.60854 -19.28654 -19.26916 -17.96904 -17.24997 -17.09231 -16.93667 -15.92405 -15.78357 -15.60980 -15.24168 -14.95268 -14.78038 -14.34508 -14.20422 -14.09896 -13.60971 -13.32526 -13.03712 -12.86669 -12.77161 -12.54469 -12.27897 -11.82585 -11.70418 -11.32908 -11.01485 -10.61001 -10.01636 -9.69091 -9.61332 -8.85721 -8.50249 -6.31854 -0.37575 0.24357 0.90965 0.98287 1.39115 1.50893 1.52603 1.57310 2.24172 2.45423 2.77110 3.01348 3.32076 3.62035 3.84234 4.10494 4.22568 4.25921 4.28340 4.40007 4.44865 4.58836 4.86452 4.96600 5.02813 5.16787 5.25791 5.30057 5.38998 5.43240 5.57952 5.62050 5.81076 5.88608 6.04464 6.25123 6.58488 6.59992 6.85607 6.95607 7.09858 8.44790 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004772 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.017993 B = 5865.775378 C = 6073.471778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.052 3.948 10 C -0.138 4.138 11 C -0.135 4.135 12 C 0.034 3.966 13 O -0.283 6.283 14 C 0.117 3.883 15 C -0.167 4.167 16 C -0.067 4.067 17 C -0.133 4.133 18 C -0.046 4.046 19 C -0.232 4.232 20 C 0.363 3.637 21 O -0.488 6.488 22 C -0.163 4.163 23 C -0.194 4.194 24 H 0.284 0.716 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.164 0.836 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -16.259 7.233 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.096 0.904 9 C 0.050 3.950 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.008 4.008 13 O -0.197 6.197 14 C 0.074 3.926 15 C -0.185 4.185 16 C -0.085 4.085 17 C -0.150 4.150 18 C -0.064 4.064 19 C -0.234 4.234 20 C 0.223 3.777 21 O -0.362 6.362 22 C -0.182 4.182 23 C -0.213 4.213 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.144 0.856 28 H 0.182 0.818 29 H 0.192 0.808 30 H 0.195 0.805 31 H 0.170 0.830 32 H 0.133 0.867 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.520 -15.634 6.761 17.101 hybrid contribution 0.065 0.917 -0.294 0.965 sum 1.586 -14.717 6.467 16.153 Atomic orbital electron populations 1.69861 1.08859 1.29977 1.39141 1.26801 0.95720 1.04557 0.91558 0.85112 0.78373 0.75325 0.79966 1.18241 1.19556 1.18501 1.19655 0.94677 0.90917 1.47712 0.90438 1.17969 0.93103 0.93350 0.90614 1.21102 0.97707 0.95314 1.01690 1.19993 0.99846 0.91938 1.03579 1.18646 0.92596 0.84716 1.04827 1.83953 1.50856 1.19964 1.64887 1.19511 0.94204 0.88838 0.90029 1.21618 0.97816 0.97204 1.01885 1.21684 0.96877 0.95577 0.94355 1.21674 0.98030 1.00287 0.95051 1.21779 0.93211 0.90529 1.00871 1.21702 1.05507 1.02341 0.93821 1.24773 0.77079 0.80724 0.95092 1.90675 1.46614 1.31854 1.67028 1.20542 0.95285 0.98515 1.03835 1.20885 1.01618 0.94152 1.04663 0.90596 0.86356 0.88093 0.85581 0.81850 0.80827 0.80460 0.82966 0.86703 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.59 10.62 21.82 0.23 -47.36 16 2 C 0.02 1.31 5.40 85.24 0.46 1.77 16 3 Si 0.99 40.22 29.56 68.60 2.03 42.24 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.11 9.04 23.40 0.21 -27.90 16 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 9 C 0.05 2.97 5.55 -21.28 -0.12 2.85 16 10 C -0.14 -8.01 8.61 22.48 0.19 -7.81 16 11 C -0.13 -7.32 9.92 22.11 0.22 -7.10 16 12 C 0.03 1.69 5.51 22.81 0.13 1.81 16 13 O -0.28 -12.95 8.52 -8.21 -0.07 -13.02 16 14 C 0.12 4.16 3.99 22.94 0.09 4.25 16 15 C -0.17 -4.70 9.75 22.34 0.22 -4.49 16 16 C -0.07 -1.23 10.03 22.32 0.22 -1.00 16 17 C -0.13 -1.90 10.02 22.23 0.22 -1.68 16 18 C -0.05 -0.79 9.79 22.57 0.22 -0.57 16 19 C -0.23 -6.68 5.88 -20.07 -0.12 -6.79 16 20 C 0.36 11.20 11.44 70.06 0.80 12.00 16 21 O -0.49 -21.63 15.08 17.83 0.27 -21.36 16 22 C -0.16 -7.86 9.13 22.11 0.20 -7.66 16 23 C -0.19 -10.08 9.74 22.48 0.22 -9.86 16 24 H 0.28 14.51 8.30 -92.70 -0.77 13.74 16 25 H 0.12 7.10 6.15 -2.91 -0.02 7.08 16 26 H 0.10 5.23 8.06 -2.91 -0.02 5.21 16 27 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 30 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.12 4.88 6.64 -2.91 -0.02 4.86 16 33 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -76.28 294.22 6.76 -69.52 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 1.13 Total: 22.15 kcal Atomic # 6 Polarization: -55.35 SS G_CDS: 3.17 Total: -52.18 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.23 Total: -47.36 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: 0.20 Total: -34.38 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -76.28 6.76 -69.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.859 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds