Wall clock time and date at job start Mon Mar 30 2020 07:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 S 1.76206 * 119.99908 * 179.76895 * 7 6 5 9 9 O 1.42095 * 104.27613 * 26.08700 * 8 7 6 10 10 O 1.42098 * 104.27729 * 153.94988 * 8 7 6 11 11 C 1.81398 * 104.44674 * 270.01641 * 8 7 6 12 12 C 1.50701 * 109.47344 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99358 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00281 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46754 * 60.00085 * 16 14 12 18 18 H 1.48496 * 109.47515 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47077 * 300.00358 * 16 14 12 20 20 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 21 21 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 31 31 H 1.08999 * 109.47395 * 299.99889 * 11 8 7 32 32 H 1.08998 * 109.47061 * 60.00166 * 11 8 7 33 33 H 0.96998 * 120.00093 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.00252 * 179.97438 * 20 7 6 35 35 H 1.07991 * 120.00142 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 16 3.5410 -2.8443 -4.9267 9 8 3.5687 -1.8354 -5.9269 10 8 4.7350 -3.4848 -4.4986 11 6 2.2576 -4.0719 -5.2962 12 6 2.6500 -4.8553 -6.5224 13 1 3.5788 -4.6368 -7.0284 14 6 1.8239 -5.8516 -6.9975 15 7 0.6932 -6.1181 -6.3810 16 14 2.3106 -6.8232 -8.5169 17 1 3.6013 -7.5148 -8.2697 18 1 1.2600 -7.8281 -8.8196 19 1 2.4573 -5.8986 -9.6697 20 6 3.2875 -2.4861 -2.2324 21 6 2.8271 -1.8343 -1.1037 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.0688 0.6339 -2.5850 30 1 1.8972 -0.5213 -4.5956 31 1 2.1496 -4.7506 -4.4502 32 1 1.3105 -3.5640 -5.4778 33 1 0.1118 -6.8188 -6.7155 34 1 3.9084 -3.3643 -2.1333 35 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020223290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:14 Heat of formation + Delta-G solvation = -69.672348 kcal Electronic energy + Delta-G solvation = -18006.138808 eV Core-core repulsion = 15095.615023 eV Total energy + Delta-G solvation = -2910.523785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.47933 -36.11601 -35.53085 -34.93456 -33.37040 -30.89471 -29.92653 -29.03193 -27.34655 -23.92691 -23.32465 -22.61893 -20.22202 -18.45162 -17.33938 -16.54578 -15.89927 -15.45921 -15.21909 -14.62589 -14.38872 -14.23112 -13.91237 -13.73042 -13.27776 -13.00313 -12.62088 -12.47337 -12.24820 -12.13211 -11.47503 -11.45174 -11.35935 -11.14125 -11.13088 -11.04779 -10.88783 -10.74151 -10.64221 -10.17782 -9.83654 -9.26034 -8.84665 -8.79674 -8.72101 -6.34594 -4.46026 0.96334 1.24584 1.49406 3.23925 3.26146 3.30957 3.63136 3.92445 4.24553 4.48708 4.61243 4.85509 4.87843 4.98715 5.02264 5.07549 5.23094 5.27219 5.41277 5.48718 5.57687 5.61871 5.73422 5.76644 5.90796 6.01711 6.03883 6.12645 6.35002 6.37975 6.57778 6.69227 6.73034 7.03206 7.42171 7.72088 8.55634 9.21815 10.76884 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.004675 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.155574 B = 5988.418805 C = 6324.029023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.038 4.038 5 C -0.140 4.140 6 C -0.023 4.023 7 C -0.653 4.653 8 S 2.465 3.535 9 O -0.961 6.961 10 O -0.962 6.962 11 C -0.393 4.393 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.078 3.922 15 N -0.879 5.879 16 Si 0.906 3.094 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.022 4.022 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.140 0.860 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 10.528 12.304 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.202 4.202 4 C -0.038 4.038 5 C -0.159 4.159 6 C -0.042 4.042 7 C -0.737 4.737 8 S 2.648 3.352 9 O -0.959 6.959 10 O -0.959 6.959 11 C -0.529 4.529 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.129 4.129 15 N -0.515 5.515 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.041 4.041 21 C -0.162 4.162 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.623 10.664 11.947 16.027 hybrid contribution -0.588 -0.563 -0.125 0.824 sum -1.210 10.101 11.822 15.597 Atomic orbital electron populations 1.21865 0.93995 1.02355 1.02021 1.20222 0.96265 0.96174 0.95340 1.21859 1.01353 0.94930 1.02031 1.20093 0.94677 0.94320 0.94750 1.21039 1.01880 1.01026 0.91967 1.20973 0.91616 0.91937 0.99635 1.31180 1.13297 1.10648 1.18535 1.06636 0.78526 0.76673 0.73320 1.93449 1.87652 1.57991 1.56784 1.93449 1.44159 1.76749 1.81532 1.27453 1.10016 1.08945 1.06471 1.20331 1.07714 1.19500 1.10135 0.91028 1.24919 0.94335 0.96201 0.97442 1.69942 1.10777 1.30942 1.39790 0.86412 0.78694 0.79599 0.82168 1.19355 1.20707 1.19360 1.20978 0.94356 0.97815 0.90945 1.21132 0.99870 0.96478 0.98720 0.92270 0.92325 0.92218 0.90258 0.92445 0.92254 0.92298 0.85622 0.84251 0.89356 0.89354 0.92082 0.84231 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.00 37.16 0.33 -0.93 16 2 C -0.06 -0.59 3.09 -91.77 -0.28 -0.87 16 3 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 4 C -0.04 -0.49 4.78 -104.62 -0.50 -0.99 16 5 C -0.14 -1.92 8.71 -39.58 -0.34 -2.26 16 6 C -0.02 -0.38 9.47 -39.58 -0.37 -0.75 16 7 C -0.65 -11.86 5.66 -39.58 -0.22 -12.08 16 8 S 2.46 53.27 5.08 -107.50 -0.55 52.73 16 9 O -0.96 -22.68 17.13 -57.54 -0.99 -23.66 16 10 O -0.96 -22.70 17.13 -57.54 -0.99 -23.68 16 11 C -0.39 -9.45 5.74 36.01 0.21 -9.24 16 12 C -0.54 -14.72 9.13 -34.44 -0.31 -15.03 16 13 H 0.07 1.91 7.71 -52.48 -0.40 1.51 16 14 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 15 N -0.88 -24.60 13.29 55.43 0.74 -23.86 16 16 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C -0.02 -0.37 9.47 -39.58 -0.37 -0.74 16 21 C -0.14 -1.96 9.67 -39.58 -0.38 -2.34 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.52 7.37 -51.93 -0.38 0.13 16 25 H 0.08 0.68 7.88 -51.93 -0.41 0.28 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.50 7.41 -51.93 -0.38 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 1.38 7.10 -52.48 -0.37 1.01 16 30 H 0.14 2.16 7.57 -52.49 -0.40 1.76 16 31 H 0.09 2.09 8.14 -51.92 -0.42 1.66 16 32 H 0.09 2.09 8.14 -51.92 -0.42 1.66 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.14 2.17 7.57 -52.48 -0.40 1.77 16 35 H 0.13 1.36 7.95 -52.49 -0.42 0.95 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -32.59 310.39 -8.98 -41.57 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.84 Total: 0.61 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: -2.02 Total: -44.11 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.74 Total: -23.86 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -1.97 Total: -47.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.55 Total: 52.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.59 -8.98 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.099 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds