Wall clock time and date at job start Mon Mar 30 2020 07:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 S 1.76206 * 119.99908 * 179.76895 * 7 6 5 9 9 O 1.42095 * 104.27613 * 26.08700 * 8 7 6 10 10 O 1.42098 * 104.27729 * 153.94988 * 8 7 6 11 11 C 1.81398 * 104.44674 * 270.01641 * 8 7 6 12 12 C 1.50701 * 109.47344 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99358 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00281 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46754 * 60.00085 * 16 14 12 18 18 H 1.48496 * 109.47515 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47077 * 300.00358 * 16 14 12 20 20 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 21 21 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 31 31 H 1.08999 * 109.47395 * 299.99889 * 11 8 7 32 32 H 1.08998 * 109.47061 * 60.00166 * 11 8 7 33 33 H 0.96998 * 120.00093 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.00252 * 179.97438 * 20 7 6 35 35 H 1.07991 * 120.00142 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 16 3.5410 -2.8443 -4.9267 9 8 3.5687 -1.8354 -5.9269 10 8 4.7350 -3.4848 -4.4986 11 6 2.2576 -4.0719 -5.2962 12 6 2.6500 -4.8553 -6.5224 13 1 3.5788 -4.6368 -7.0284 14 6 1.8239 -5.8516 -6.9975 15 7 0.6932 -6.1181 -6.3810 16 14 2.3106 -6.8232 -8.5169 17 1 3.6013 -7.5148 -8.2697 18 1 1.2600 -7.8281 -8.8196 19 1 2.4573 -5.8986 -9.6697 20 6 3.2875 -2.4861 -2.2324 21 6 2.8271 -1.8343 -1.1037 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.0688 0.6339 -2.5850 30 1 1.8972 -0.5213 -4.5956 31 1 2.1496 -4.7506 -4.4502 32 1 1.3105 -3.5640 -5.4778 33 1 0.1118 -6.8188 -6.7155 34 1 3.9084 -3.3643 -2.1333 35 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:13 Heat of formation + Delta-G solvation = -90.441713 kcal Electronic energy + Delta-G solvation = -18007.039435 eV Core-core repulsion = 15095.615023 eV Total energy + Delta-G solvation = -2911.424412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58006 -37.95250 -36.84791 -36.36760 -35.42205 -32.06533 -31.15089 -30.91480 -27.97574 -25.66219 -24.69262 -23.80291 -21.16047 -19.99766 -19.15686 -18.30355 -17.31902 -17.13741 -16.54530 -16.10179 -15.96991 -15.56430 -14.85846 -14.59201 -14.48249 -14.36178 -14.07642 -14.02820 -13.57488 -13.40340 -13.00848 -12.96930 -12.92834 -12.71143 -12.53580 -12.43243 -12.17863 -12.07200 -11.83743 -11.58904 -11.53638 -11.02662 -10.78029 -10.05052 -10.01787 -8.41514 -6.60645 -0.63431 -0.13840 0.32328 1.39272 1.42619 1.50841 2.21951 2.33730 2.48351 2.92345 3.11369 3.36667 3.62141 3.75097 3.96866 4.13333 4.29229 4.35701 4.44110 4.48321 4.75445 4.75654 4.78387 4.82914 4.90171 4.99613 5.00144 5.08440 5.16233 5.26240 5.31652 5.32414 5.39876 5.57553 5.69663 5.89286 6.48759 7.11176 8.70793 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.004675 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.155574 B = 5988.418805 C = 6324.029023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.028 4.028 5 C -0.137 4.137 6 C -0.041 4.041 7 C -0.668 4.668 8 S 2.492 3.508 9 O -0.986 6.986 10 O -0.987 6.987 11 C -0.407 4.407 12 C -0.572 4.572 13 H 0.067 0.933 14 C 0.028 3.972 15 N -0.908 5.908 16 Si 0.965 3.035 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.040 4.040 21 C -0.141 4.141 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 11.680 14.032 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.028 4.028 5 C -0.156 4.156 6 C -0.060 4.060 7 C -0.757 4.757 8 S 2.680 3.320 9 O -0.984 6.984 10 O -0.984 6.984 11 C -0.540 4.540 12 C -0.610 4.610 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.544 5.544 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.187 1.187 20 C -0.059 4.059 21 C -0.160 4.160 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.173 0.827 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.134 11.779 13.625 18.046 hybrid contribution -0.477 -0.803 -0.486 1.053 sum -1.611 10.976 13.139 17.196 Atomic orbital electron populations 1.21882 0.93159 1.02150 1.03084 1.20330 0.96824 0.96637 0.93997 1.21872 1.01052 0.94137 1.03087 1.20604 0.92840 0.93499 0.95890 1.21377 1.01384 1.01438 0.91361 1.21157 0.91940 0.91906 1.00968 1.30440 1.16253 1.11967 1.17034 1.05248 0.77220 0.75624 0.73904 1.93401 1.87787 1.58054 1.59145 1.93402 1.45180 1.77590 1.82233 1.27488 1.11228 1.09954 1.05376 1.20773 1.07974 1.20639 1.11613 0.91484 1.25830 0.94241 0.97075 1.00441 1.70020 1.11605 1.31571 1.41227 0.85502 0.78892 0.78455 0.78506 1.18654 1.19289 1.18660 1.21172 0.95032 0.98466 0.91212 1.21518 0.99043 0.96269 0.99144 0.93124 0.90302 0.92243 0.88701 0.92968 0.92259 0.90307 0.82657 0.84256 0.89819 0.89818 0.91607 0.84205 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.00 71.98 0.65 -1.35 16 2 C -0.06 -0.90 3.09 -11.54 -0.04 -0.94 16 3 C -0.14 -1.88 9.01 71.98 0.65 -1.23 16 4 C -0.03 -0.64 4.78 -19.87 -0.09 -0.73 16 5 C -0.14 -3.43 8.71 22.27 0.19 -3.24 16 6 C -0.04 -1.32 9.47 22.27 0.21 -1.11 16 7 C -0.67 -24.51 5.66 22.27 0.13 -24.39 16 8 S 2.49 111.88 5.08 -56.49 -0.29 111.59 16 9 O -0.99 -48.14 17.13 -127.65 -2.19 -50.32 16 10 O -0.99 -48.16 17.13 -127.65 -2.19 -50.35 16 11 C -0.41 -20.45 5.74 71.24 0.41 -20.04 16 12 C -0.57 -32.35 9.13 25.60 0.23 -32.11 16 13 H 0.07 3.72 7.71 -2.91 -0.02 3.70 16 14 C 0.03 1.53 5.46 84.65 0.46 1.99 16 15 N -0.91 -51.76 13.29 21.44 0.28 -51.48 16 16 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 C -0.04 -1.29 9.47 22.27 0.21 -1.08 16 21 C -0.14 -3.52 9.67 22.27 0.22 -3.31 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.82 7.37 -2.39 -0.02 0.80 16 25 H 0.09 1.20 7.88 -2.39 -0.02 1.18 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.78 7.41 -2.39 -0.02 0.76 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.16 2.91 7.10 -2.91 -0.02 2.89 16 30 H 0.14 4.38 7.57 -2.91 -0.02 4.35 16 31 H 0.08 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.08 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.14 4.38 7.57 -2.91 -0.02 4.35 16 35 H 0.16 2.86 7.95 -2.92 -0.02 2.84 16 Total: -1.00 -70.92 310.39 1.95 -68.97 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.07 Total: 14.40 kcal Atomic # 6 Polarization: -90.76 SS G_CDS: 3.23 Total: -87.54 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.28 Total: -51.48 kcal Atomic # 8 Polarization: -96.30 SS G_CDS: -4.37 Total: -100.67 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 111.88 SS G_CDS: -0.29 Total: 111.59 kcal Total: -70.92 1.95 -68.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.471 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds