Wall clock time and date at job start Mon Mar 30 2020 08:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81406 * 109.46619 * 2 1 4 4 C 1.76204 * 102.99477 * 180.02562 * 3 2 1 5 5 C 1.40051 * 119.89780 * 90.00320 * 4 3 2 6 6 O 1.35958 * 119.94603 * 359.97438 * 5 4 3 7 7 C 1.42906 * 116.99884 * 180.02562 * 6 5 4 8 8 C 1.37651 * 120.09997 * 180.02562 * 5 4 3 9 9 C 1.40909 * 119.89865 * 359.97150 * 8 5 4 10 10 C 1.41030 * 120.09915 * 179.72800 * 9 8 5 11 11 H 1.08002 * 120.00544 * 334.43050 * 10 9 8 12 12 C 1.39774 * 119.99792 * 154.43682 * 10 9 8 13 13 N 1.30954 * 119.99781 * 343.17153 * 12 10 9 14 14 Si 1.86799 * 119.99855 * 163.17257 * 12 10 9 15 15 H 1.48504 * 109.47255 * 59.99696 * 14 12 10 16 16 H 1.48501 * 109.46930 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47333 * 299.99642 * 14 12 10 18 18 C 1.40910 * 119.79650 * 0.02562 * 9 8 5 19 19 C 1.37653 * 119.89390 * 0.04881 * 18 9 8 20 20 O 1.35962 * 119.94865 * 179.97438 * 19 18 9 21 21 C 1.42903 * 116.99850 * 359.96759 * 20 19 18 22 22 H 1.08998 * 109.47458 * 60.00100 * 1 2 3 23 23 H 1.09002 * 109.46461 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47307 * 299.99646 * 1 2 3 25 25 H 1.09000 * 109.47307 * 240.00354 * 2 1 3 26 26 H 1.08997 * 109.47012 * 119.99625 * 2 1 3 27 27 H 1.09003 * 109.47288 * 300.00819 * 7 6 5 28 28 H 1.09005 * 109.46334 * 60.00431 * 7 6 5 29 29 H 1.08996 * 109.47249 * 180.02562 * 7 6 5 30 30 H 1.08008 * 120.04895 * 179.97438 * 8 5 4 31 31 H 0.97006 * 119.99568 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.04975 * 179.97438 * 18 9 8 33 33 H 1.08993 * 109.46901 * 60.00317 * 21 20 19 34 34 H 1.09001 * 109.47262 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46918 * 300.00489 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.8854 1.5118 -0.0008 5 6 4.5785 1.4333 -1.2152 6 8 3.8993 1.5100 -2.3905 7 6 4.6689 1.4224 -3.5914 8 6 5.9462 1.2777 -1.2206 9 6 6.6489 1.1978 -0.0019 10 6 8.0495 1.0326 -0.0025 11 1 8.5380 0.5664 -0.8454 12 6 8.8055 1.4721 1.0878 13 7 8.2884 2.3157 1.9456 14 14 10.5535 0.8561 1.3214 15 1 11.3729 1.2327 0.1415 16 1 11.1345 1.4673 2.5437 17 1 10.5425 -0.6219 1.4650 18 6 5.9472 1.2773 1.2175 19 6 4.5793 1.4314 1.2131 20 8 3.9011 1.5077 2.3889 21 6 4.6717 1.4200 3.5892 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.3941 2.2358 -3.6185 28 1 5.1933 0.4671 -3.6179 29 1 4.0065 1.4977 -4.4537 30 1 6.4799 1.2169 -2.1577 31 1 8.8133 2.6210 2.7022 32 1 6.4816 1.2162 2.1540 33 1 5.3964 2.2336 3.6159 34 1 4.0099 1.4941 4.4521 35 1 5.1964 0.4650 3.6151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037628221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:17 Heat of formation + Delta-G solvation = -66.448828 kcal Electronic energy + Delta-G solvation = -18491.341150 eV Core-core repulsion = 15580.957147 eV Total energy + Delta-G solvation = -2910.384003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.08188 -37.98218 -35.66007 -33.41350 -32.19391 -30.04087 -28.29129 -26.85928 -26.69271 -25.06848 -22.91360 -21.21780 -20.49683 -18.29004 -16.54343 -15.80204 -15.64021 -15.31552 -15.03428 -14.90543 -14.63813 -14.50093 -14.10813 -13.74235 -13.14081 -12.44674 -12.34391 -12.10080 -11.80751 -11.54909 -11.46980 -11.25241 -11.14142 -10.96694 -10.67750 -10.66594 -10.57604 -10.22152 -9.91482 -9.69893 -9.28849 -8.94096 -7.32537 -7.09187 -6.83563 -6.57446 -4.70668 2.31537 2.85241 2.92143 2.94735 2.97832 3.16362 3.71963 3.78502 3.93652 4.40359 4.58798 5.42719 5.46684 5.55999 5.67597 5.73750 5.80201 5.83514 5.92151 5.93824 6.14629 6.19390 6.26030 6.41212 6.47965 6.62413 6.70626 6.81212 6.90795 7.10640 7.56604 7.67494 7.86832 8.09870 8.35743 8.44241 8.64635 8.77810 9.89440 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.006688 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.018874 B = 4185.473051 C = 5199.134630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.113 4.113 3 S -0.144 6.144 4 C -0.286 4.286 5 C 0.213 3.787 6 O -0.312 6.312 7 C 0.033 3.967 8 C -0.335 4.335 9 C 0.177 3.823 10 C -0.445 4.445 11 H 0.084 0.916 12 C 0.076 3.924 13 N -0.775 5.775 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.282 4.282 19 C 0.201 3.799 20 O -0.313 6.313 21 C 0.034 3.966 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -3.012 -1.031 5.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.260 4.260 3 S 0.088 5.912 4 C -0.400 4.400 5 C 0.165 3.835 6 O -0.225 6.225 7 C -0.063 4.063 8 C -0.357 4.357 9 C 0.173 3.827 10 C -0.473 4.473 11 H 0.102 0.898 12 C -0.144 4.144 13 N -0.398 5.398 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.303 4.303 19 C 0.153 3.847 20 O -0.226 6.226 21 C -0.062 4.062 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.056 -1.881 -0.811 5.456 hybrid contribution 2.368 -1.394 0.151 2.752 sum -2.688 -3.275 -0.660 4.288 Atomic orbital electron populations 1.21438 0.93726 1.01228 1.02357 1.23440 0.98479 1.00341 1.03726 1.84575 1.00442 1.08751 1.97388 1.19043 0.94276 1.36576 0.90072 1.18282 0.89824 0.91443 0.83914 1.86086 1.35978 1.88064 1.12402 1.22863 0.96688 1.01036 0.85687 1.20910 0.91857 1.24431 0.98495 1.17196 0.92814 0.82930 0.89741 1.19595 0.91795 1.33177 1.02729 0.89837 1.26029 1.01374 0.92601 0.94443 1.69897 1.38649 1.20548 1.10732 0.86267 0.80814 0.80367 0.78842 1.18674 1.20012 1.18537 1.21240 0.90568 1.18401 1.00134 1.18405 0.90251 0.92184 0.83868 1.86051 1.36062 1.88058 1.12437 1.22853 0.96576 1.01383 0.85362 0.92294 0.92430 0.92274 0.91384 0.91329 0.93134 0.93373 0.89533 0.87657 0.90355 0.85059 0.92455 0.89833 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.92 37.16 0.37 -1.48 16 2 C -0.11 -2.05 6.62 37.16 0.25 -1.81 16 3 S -0.14 -3.12 20.63 -107.50 -2.22 -5.33 16 4 C -0.29 -7.03 5.77 -38.22 -0.22 -7.25 16 5 C 0.21 5.12 6.68 -39.12 -0.26 4.86 16 6 O -0.31 -6.65 9.86 -19.61 -0.19 -6.85 16 7 C 0.03 0.54 9.81 101.05 0.99 1.53 16 8 C -0.34 -8.18 8.76 -38.79 -0.34 -8.52 16 9 C 0.18 4.60 5.56 -106.82 -0.59 4.01 16 10 C -0.44 -11.16 9.02 -37.95 -0.34 -11.50 16 11 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 12 C 0.08 1.79 5.14 -17.35 -0.09 1.70 16 13 N -0.77 -18.75 10.97 55.54 0.61 -18.14 16 14 Si 0.91 17.36 29.59 -169.99 -5.03 12.33 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 18 C -0.28 -7.21 7.65 -38.78 -0.30 -7.50 16 19 C 0.20 4.99 6.68 -39.12 -0.26 4.73 16 20 O -0.31 -7.04 9.86 -19.62 -0.19 -7.23 16 21 C 0.03 0.62 9.81 101.05 0.99 1.61 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 28 H 0.05 0.75 7.65 -51.93 -0.40 0.35 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.11 2.36 6.26 -52.48 -0.33 2.03 16 31 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 32 H 0.13 3.32 4.39 -52.49 -0.23 3.09 16 33 H 0.06 1.08 7.65 -51.93 -0.40 0.69 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.81 7.65 -51.93 -0.40 0.41 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -28.43 308.10 -6.85 -35.28 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.66 Total: 4.93 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 0.19 Total: -19.62 kcal Atomic # 7 Polarization: -18.75 SS G_CDS: 0.61 Total: -18.14 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.39 Total: -14.08 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.22 Total: -5.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.43 -6.85 -35.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037628221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.168 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds