Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35679 * 117.00103 * 2 1 4 4 C 1.39058 * 119.89103 * 359.97438 * 3 2 1 5 5 C 1.37590 * 120.13065 * 179.97438 * 4 3 2 6 6 C 1.40038 * 119.90693 * 0.02562 * 5 4 3 7 7 C 1.46863 * 120.11167 * 179.97438 * 6 5 4 8 8 O 1.21300 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00056 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 C 1.40027 * 119.78049 * 0.24673 * 6 5 4 20 20 C 1.37707 * 119.86759 * 359.47346 * 19 6 5 21 21 Cl 1.73598 * 119.95568 * 180.27354 * 20 19 6 22 22 H 1.08997 * 109.47442 * 59.99500 * 1 2 3 23 23 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46554 * 299.99973 * 1 2 3 25 25 H 1.08004 * 119.93261 * 0.02730 * 4 3 2 26 26 H 1.08008 * 120.04649 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47152 * 59.99857 * 9 7 6 28 28 H 1.09001 * 109.46980 * 299.99957 * 9 7 6 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.06807 * 179.74732 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2855 2.3737 -0.0005 5 6 1.9050 3.6022 0.0000 6 6 3.3033 3.6791 0.0005 7 6 3.9693 4.9880 0.0005 8 8 3.3080 6.0049 -0.0004 9 6 5.4742 5.0678 0.0017 10 6 5.9071 6.5353 0.0021 11 6 7.4120 6.6150 0.0026 12 1 8.0007 5.7096 0.0031 13 6 8.0372 7.8439 0.0025 14 7 7.3203 8.9465 0.0014 15 14 9.9026 7.9428 0.0039 16 1 10.3979 7.9684 -1.3959 17 1 10.3322 9.1801 0.7036 18 1 10.4605 6.7585 0.7049 19 6 4.0644 2.5037 -0.0047 20 6 3.4349 1.2790 0.0006 21 17 4.3763 -0.1795 0.0013 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 0.2071 2.3139 -0.0005 26 1 1.3137 4.5061 -0.0008 27 1 5.8649 4.5735 -0.8878 28 1 5.8635 4.5743 0.8922 29 1 5.5177 7.0292 -0.8882 30 1 5.5164 7.0291 0.8917 31 1 7.7601 9.8110 0.0010 32 1 5.1431 2.5576 -0.0084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041279399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -87.469800 kcal Electronic energy + Delta-G solvation = -17176.171970 eV Core-core repulsion = 14126.999629 eV Total energy + Delta-G solvation = -3049.172341 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51135 -40.34754 -38.28957 -37.33556 -35.60178 -33.30707 -32.02104 -31.58098 -28.49868 -27.76816 -24.98237 -23.75823 -22.89831 -20.59759 -19.44233 -18.67784 -17.51802 -17.45565 -16.87876 -16.47717 -16.29205 -16.08250 -15.63063 -15.11984 -14.76768 -14.42194 -14.28719 -13.95467 -13.87390 -13.26322 -12.93045 -12.81866 -12.56196 -12.47207 -12.16229 -12.07964 -11.96081 -11.91398 -11.64549 -11.30845 -10.56125 -10.54967 -10.08349 -9.36217 -8.17803 -6.31229 -0.43776 0.03329 1.07592 1.34978 1.42695 1.44960 1.55997 2.11259 2.42318 2.55762 3.09694 3.15312 3.59432 3.74003 4.05083 4.16016 4.31296 4.36410 4.41203 4.52808 4.56169 4.59752 4.76679 4.78236 4.97971 5.08588 5.33080 5.36537 5.49786 5.63024 5.84672 6.13342 6.18199 6.62051 6.88187 7.38856 8.94710 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.003915 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.195975 B = 7150.513515 C = 8040.959869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.169 3.831 4 C -0.202 4.202 5 C -0.022 4.022 6 C -0.205 4.205 7 C 0.399 3.601 8 O -0.496 6.496 9 C -0.151 4.151 10 C 0.035 3.965 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.256 1.256 19 C -0.019 4.019 20 C -0.096 4.096 21 Cl -0.051 7.051 22 H 0.073 0.927 23 H 0.124 0.876 24 H 0.073 0.927 25 H 0.176 0.824 26 H 0.142 0.858 27 H 0.108 0.892 28 H 0.108 0.892 29 H -0.016 1.016 30 H -0.016 1.016 31 H 0.263 0.737 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 -21.583 -0.004 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.220 4.220 5 C -0.040 4.040 6 C -0.207 4.207 7 C 0.280 3.720 8 O -0.374 6.374 9 C -0.188 4.188 10 C -0.002 4.002 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.180 1.180 19 C -0.038 4.038 20 C -0.123 4.123 21 Cl -0.023 7.023 22 H 0.091 0.909 23 H 0.142 0.858 24 H 0.091 0.909 25 H 0.193 0.807 26 H 0.160 0.840 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.772 -21.229 0.000 25.305 hybrid contribution 0.733 0.715 -0.013 1.023 sum -13.039 -20.515 -0.013 24.308 Atomic orbital electron populations 1.23550 0.75335 1.06326 1.03059 1.86120 1.24314 1.25252 1.86878 1.19103 0.90386 0.85998 0.92474 1.21406 1.01993 0.89885 1.08709 1.21455 0.93093 0.98858 0.90631 1.20343 0.94945 0.93730 1.11669 1.22909 0.92253 0.87415 0.69439 1.90493 1.68986 1.39394 1.38524 1.22051 0.91901 1.00019 1.04858 1.18763 0.95259 0.91376 0.94780 1.21729 0.92589 0.93119 1.50637 0.90720 1.26110 1.04151 0.95421 0.94679 1.70159 1.37753 0.98249 1.51574 0.85353 0.78636 0.77956 0.78518 1.19730 1.21164 1.17999 1.21338 1.01650 0.88548 0.92279 1.20130 0.89431 0.88899 1.13886 1.98367 1.71779 1.34896 1.97225 0.90879 0.85790 0.90873 0.80688 0.83997 0.87357 0.87381 0.99729 0.99711 0.92855 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.31 -5.42 9.93 -89.97 -0.89 -6.31 16 3 C 0.17 3.42 6.69 22.69 0.15 3.58 16 4 C -0.20 -3.68 9.01 22.31 0.20 -3.48 16 5 C -0.02 -0.54 9.59 22.55 0.22 -0.32 16 6 C -0.21 -5.95 5.87 -20.15 -0.12 -6.07 16 7 C 0.40 15.21 7.11 27.95 0.20 15.41 16 8 O -0.50 -22.83 15.97 -3.09 -0.05 -22.88 16 9 C -0.15 -6.09 4.24 29.85 0.13 -5.96 16 10 C 0.04 1.96 4.26 29.85 0.13 2.09 16 11 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 12 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 13 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 14 N -0.94 -59.31 13.29 21.45 0.28 -59.03 16 15 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 C -0.02 -0.48 9.24 22.58 0.21 -0.28 16 20 C -0.10 -2.22 6.32 22.37 0.14 -2.08 16 21 Cl -0.05 -1.13 28.49 -2.72 -0.08 -1.21 16 22 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 23 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 25 H 0.18 1.90 6.27 -2.91 -0.02 1.88 16 26 H 0.14 3.44 7.64 -2.91 -0.02 3.42 16 27 H 0.11 3.87 8.08 -2.39 -0.02 3.85 16 28 H 0.11 3.86 8.09 -2.39 -0.02 3.84 16 29 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 30 H -0.02 -0.96 8.10 -2.39 -0.02 -0.98 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.16 3.64 7.04 -2.91 -0.02 3.62 16 Total: -1.00 -74.15 298.04 5.48 -68.66 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 1.13 Total: 0.83 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 3.06 Total: -26.56 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.28 Total: -59.03 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.94 Total: -29.19 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -74.15 5.48 -68.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041279399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.807 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds