Wall clock time and date at job start Mon Mar 30 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35614 * 117.00240 * 2 1 4 4 C 1.38686 * 120.15876 * 359.72326 * 3 2 1 5 5 C 1.38045 * 120.13048 * 180.25612 * 4 3 2 6 6 C 1.38725 * 120.43831 * 0.03844 * 5 4 3 7 7 Cl 1.73604 * 119.83794 * 179.97438 * 6 5 4 8 8 C 1.37772 * 120.31514 * 359.95898 * 6 5 4 9 9 C 1.40020 * 119.86916 * 0.02562 * 8 6 5 10 10 C 1.46782 * 120.21920 * 179.97438 * 9 8 6 11 11 O 1.21298 * 120.00106 * 180.02562 * 10 9 8 12 12 C 1.50695 * 120.00131 * 0.02562 * 10 9 8 13 13 C 1.53002 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46834 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00021 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99547 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00347 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99775 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47038 * 60.00193 * 18 16 14 20 20 H 1.48500 * 109.47245 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47208 * 300.00197 * 18 16 14 22 22 H 1.09004 * 109.47306 * 59.99857 * 1 2 3 23 23 H 1.09004 * 109.47411 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47356 * 300.00266 * 1 2 3 25 25 H 1.08006 * 119.92955 * 0.25033 * 4 3 2 26 26 H 1.07996 * 119.77964 * 180.02562 * 5 4 3 27 27 H 1.08008 * 120.06538 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47481 * 300.00473 * 12 10 9 29 29 H 1.09006 * 109.47181 * 60.00351 * 12 10 9 30 30 H 1.08999 * 109.47508 * 300.00117 * 13 12 10 31 31 H 1.09003 * 109.47056 * 60.00526 * 13 12 10 32 32 H 0.97001 * 120.00372 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2926 2.3735 -0.0058 5 6 1.9200 3.6032 -0.0111 6 6 3.3048 3.6856 -0.0115 7 17 4.0775 5.2402 -0.0190 8 6 4.0697 2.5397 -0.0058 9 6 3.4469 1.2857 0.0000 10 6 4.2543 0.0599 0.0056 11 8 3.7107 -1.0245 0.0101 12 6 5.7587 0.1485 0.0057 13 6 6.3526 -1.2615 0.0113 14 6 7.8571 -1.1728 0.0121 15 1 8.3411 -0.2074 0.0085 16 6 8.6154 -2.3243 0.0164 17 7 8.0261 -3.4999 0.0203 18 14 10.4802 -2.2144 0.0166 19 1 10.9328 -1.4822 1.2268 20 1 11.0567 -3.5829 0.0222 21 1 10.9336 -1.4907 -1.1983 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2140 2.3187 -0.0062 26 1 1.3288 4.5070 -0.0152 27 1 5.1475 2.6086 -0.0057 28 1 6.0915 0.6790 -0.8865 29 1 6.0909 0.6866 0.8935 30 1 6.0199 -1.7924 0.9033 31 1 6.0205 -1.7993 -0.8767 32 1 8.5596 -4.3100 0.0230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041279401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:19 Heat of formation + Delta-G solvation = -85.932629 kcal Electronic energy + Delta-G solvation = -17467.757298 eV Core-core repulsion = 14418.651614 eV Total energy + Delta-G solvation = -3049.105685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62170 -39.80499 -38.70505 -37.12073 -35.58399 -33.42243 -32.31239 -31.01493 -28.50028 -27.72185 -25.35691 -23.61188 -22.75006 -20.63178 -19.27064 -18.56969 -17.59304 -17.40255 -16.90894 -16.49892 -16.12505 -16.02122 -15.72955 -15.19557 -14.74101 -14.43840 -14.20713 -13.94511 -13.55644 -13.26263 -12.89699 -12.82817 -12.75426 -12.50539 -12.32269 -11.95040 -11.91481 -11.66553 -11.63881 -11.32729 -10.56050 -10.43120 -10.23749 -9.24438 -8.17686 -6.31818 -0.42628 0.12504 1.12933 1.42041 1.42563 1.46727 1.54376 2.24965 2.42260 2.57156 3.07846 3.15040 3.63116 3.84122 3.97549 4.24638 4.30519 4.34223 4.36727 4.52183 4.54996 4.68533 4.70116 4.81641 5.00280 5.05972 5.23353 5.42062 5.48580 5.61714 5.83786 6.17726 6.30619 6.70606 6.87717 7.38311 8.94832 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004807 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.304504 B = 5823.385656 C = 7277.939972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.319 6.319 3 C 0.170 3.830 4 C -0.203 4.203 5 C -0.028 4.028 6 C -0.093 4.093 7 Cl -0.059 7.059 8 C -0.023 4.023 9 C -0.214 4.214 10 C 0.388 3.612 11 O -0.481 6.481 12 C -0.147 4.147 13 C 0.037 3.963 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.006 4.006 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.262 1.262 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.177 0.823 26 H 0.174 0.826 27 H 0.157 0.843 28 H 0.106 0.894 29 H 0.106 0.894 30 H -0.018 1.018 31 H -0.018 1.018 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 18.992 -0.090 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.122 3.878 4 C -0.222 4.222 5 C -0.046 4.046 6 C -0.120 4.120 7 Cl -0.031 7.031 8 C -0.042 4.042 9 C -0.216 4.216 10 C 0.268 3.732 11 O -0.358 6.358 12 C -0.184 4.184 13 C 0.000 4.000 14 C -0.582 4.582 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.187 1.187 22 H 0.097 0.903 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.194 0.806 26 H 0.192 0.808 27 H 0.175 0.825 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.000 1.000 31 H 0.000 1.000 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.109 18.172 -0.087 24.285 hybrid contribution 0.814 -0.487 0.004 0.949 sum -15.296 17.684 -0.083 23.382 Atomic orbital electron populations 1.23527 0.75943 1.05713 1.03255 1.86342 1.23915 1.26527 1.86288 1.19682 0.91297 0.85954 0.90834 1.21501 1.02009 0.89954 1.08687 1.21414 0.91936 0.99113 0.92144 1.20734 0.93610 0.86713 1.10917 1.98375 1.81330 1.26109 1.97242 1.21322 1.01551 0.88673 0.92681 1.19990 0.91731 0.95052 1.14839 1.22858 0.92179 0.87535 0.70618 1.90526 1.75826 1.32161 1.37285 1.22015 0.91298 1.00455 1.04624 1.18741 0.94978 0.91698 0.94574 1.21688 0.92193 0.93427 1.50882 0.90674 1.26130 1.04741 0.94882 0.94562 1.70165 1.37843 0.98342 1.51460 0.85382 0.78209 0.77229 0.79484 1.18706 1.21226 1.18694 0.90265 0.87409 0.90286 0.80594 0.80816 0.82535 0.87580 0.87573 0.99956 0.99954 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -9.71 8.57 -68.30 -0.59 -10.29 16 3 C 0.17 4.71 6.71 22.91 0.15 4.86 16 4 C -0.20 -3.58 9.03 22.33 0.20 -3.37 16 5 C -0.03 -0.43 9.81 22.34 0.22 -0.22 16 6 C -0.09 -1.87 6.31 22.28 0.14 -1.73 16 7 Cl -0.06 -1.08 28.94 -2.72 -0.08 -1.16 16 8 C -0.02 -0.59 9.24 22.59 0.21 -0.38 16 9 C -0.21 -6.78 5.88 -20.08 -0.12 -6.90 16 10 C 0.39 16.16 7.10 27.92 0.20 16.36 16 11 O -0.48 -24.20 14.79 17.87 0.26 -23.94 16 12 C -0.15 -6.23 4.25 29.85 0.13 -6.11 16 13 C 0.04 2.13 4.26 29.85 0.13 2.26 16 14 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 15 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 17 N -0.94 -60.34 13.29 21.45 0.28 -60.06 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 H 0.08 0.94 7.65 -2.38 -0.02 0.93 16 23 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.08 0.94 7.67 -2.39 -0.02 0.93 16 25 H 0.18 1.77 6.30 -2.91 -0.02 1.75 16 26 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 27 H 0.16 3.64 7.05 -2.91 -0.02 3.62 16 28 H 0.11 4.00 8.09 -2.39 -0.02 3.98 16 29 H 0.11 4.00 8.09 -2.38 -0.02 3.98 16 30 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 31 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 32 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -78.75 296.70 6.11 -72.64 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.13 Total: 1.11 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.07 Total: -25.29 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.28 Total: -60.06 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.32 Total: -34.23 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -78.75 6.11 -72.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041279401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.293 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds