Wall clock time and date at job start Mon Mar 30 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47165 * 2 1 4 4 C 1.37167 * 120.00035 * 263.35333 * 3 2 1 5 5 H 1.07994 * 120.00335 * 137.27253 * 4 3 2 6 6 C 1.38888 * 119.99695 * 317.27505 * 4 3 2 7 7 N 1.31468 * 120.00290 * 349.09746 * 6 4 3 8 8 Si 1.86803 * 119.99676 * 169.09932 * 6 4 3 9 9 H 1.48498 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47263 * 119.99796 * 8 6 4 11 11 H 1.48502 * 109.47062 * 239.99660 * 8 6 4 12 12 C 1.34777 * 119.99817 * 83.63016 * 3 2 1 13 13 O 1.21586 * 119.99604 * 179.72265 * 12 3 2 14 14 N 1.34776 * 119.99917 * 359.72412 * 12 3 2 15 15 C 1.39965 * 119.99474 * 185.40095 * 14 12 3 16 16 C 1.38860 * 120.07659 * 17.54941 * 15 14 12 17 17 C 1.38110 * 119.94336 * 179.97438 * 16 15 14 18 18 C 1.38303 * 120.09060 * 0.02562 * 17 16 15 19 19 C 1.38260 * 120.14933 * 359.97438 * 18 17 16 20 20 C 1.38224 * 120.06023 * 359.68438 * 19 18 17 21 21 Cl 1.73603 * 120.04884 * 180.31881 * 20 19 18 22 22 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47013 * 300.00020 * 1 2 3 24 24 H 1.08996 * 109.46870 * 59.99648 * 1 2 3 25 25 H 1.09002 * 109.47013 * 239.99980 * 2 1 3 26 26 H 1.09001 * 109.47137 * 119.99947 * 2 1 3 27 27 H 0.97001 * 120.00068 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00241 * 5.40623 * 14 12 3 29 29 H 1.08002 * 120.02961 * 359.97438 * 16 15 14 30 30 H 1.07992 * 119.95823 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.92456 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.96901 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3766 1.9820 -1.1799 5 1 2.0843 3.0028 -1.3767 6 6 3.1154 1.2774 -2.1216 7 7 3.6535 0.1208 -1.8036 8 14 3.3443 1.9732 -3.8400 9 1 2.6437 3.2785 -3.9429 10 1 4.7923 2.1657 -4.1073 11 1 2.7785 1.0283 -4.8361 12 6 2.1209 2.0597 1.1600 13 8 2.5310 3.2043 1.1605 14 7 1.7689 1.4693 2.3194 15 6 1.7674 2.2078 3.5084 16 6 1.7659 3.5957 3.4656 17 6 1.7639 4.3216 4.6405 18 6 1.7639 3.6681 5.8594 19 6 1.7654 2.2863 5.9064 20 6 1.7603 1.5536 4.7343 21 17 1.7538 -0.1814 4.7937 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.1698 -0.3711 -2.4612 28 1 1.5167 0.5328 2.3297 29 1 1.7664 4.1071 2.5143 30 1 1.7632 5.4010 4.6075 31 1 1.7628 4.2384 6.7765 32 1 1.7658 1.7789 6.8598 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:06 Heat of formation + Delta-G solvation = 4.501729 kcal Electronic energy + Delta-G solvation = -18288.454289 eV Core-core repulsion = 15275.562884 eV Total energy + Delta-G solvation = -3012.891405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05769 -38.26104 -36.23436 -35.33756 -34.06094 -31.97900 -30.41191 -29.62214 -28.90555 -25.01334 -22.87741 -22.45219 -21.90944 -19.61582 -18.08025 -16.93586 -16.51080 -16.05116 -15.24800 -14.60027 -14.41258 -14.19923 -13.71034 -13.50912 -13.21832 -13.10531 -12.79655 -12.06269 -11.79710 -11.77287 -11.33638 -11.20761 -11.11561 -11.03262 -10.72943 -10.64517 -10.33452 -10.18540 -10.01425 -8.99317 -8.78245 -8.47468 -7.69414 -7.37057 -6.34284 -4.09626 1.45137 1.65700 2.34865 3.15698 3.23929 3.28911 3.57051 3.86103 4.22021 4.34967 4.98645 5.03217 5.12327 5.25899 5.47847 5.70347 5.77106 5.84056 6.08922 6.13452 6.21039 6.39861 6.46224 6.55169 6.77460 6.79495 6.95650 7.16466 7.43105 7.46962 7.61165 8.33862 8.62075 9.11948 9.33958 9.96225 10.70913 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.005854 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.433862 B = 4782.183823 C = 5426.841012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.451 5.451 4 C -0.292 4.292 5 H 0.090 0.910 6 C 0.035 3.965 7 N -0.879 5.879 8 Si 0.927 3.073 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.658 3.342 13 O -0.594 6.594 14 N -0.685 5.685 15 C 0.209 3.791 16 C -0.142 4.142 17 C -0.092 4.092 18 C -0.156 4.156 19 C -0.087 4.087 20 C -0.095 4.095 21 Cl -0.080 7.080 22 H 0.053 0.947 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.268 0.732 28 H 0.404 0.596 29 H 0.174 0.826 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -0.115 10.598 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.173 5.173 4 C -0.421 4.421 5 H 0.108 0.892 6 C -0.169 4.169 7 N -0.517 5.517 8 Si 0.753 3.247 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.363 3.637 13 O -0.475 6.475 14 N -0.331 5.331 15 C 0.108 3.892 16 C -0.163 4.163 17 C -0.111 4.111 18 C -0.176 4.176 19 C -0.106 4.106 20 C -0.126 4.126 21 Cl -0.051 7.051 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.241 0.759 29 H 0.191 0.809 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.142 0.317 10.283 11.501 hybrid contribution 0.135 -0.638 -0.678 0.941 sum -5.007 -0.320 9.605 10.836 Atomic orbital electron populations 1.22258 0.98107 1.00574 1.01670 1.21537 0.91579 0.85439 1.03811 1.42791 1.59095 1.12040 1.03335 1.19363 1.32232 0.99633 0.90839 0.89222 1.25532 0.94214 0.96400 1.00752 1.69847 1.32378 1.14482 1.34989 0.85862 0.78203 0.79128 0.81484 1.19161 1.20679 1.20676 1.16518 0.80964 0.86310 0.79957 1.90594 1.54414 1.17598 1.84920 1.43210 1.70294 1.14115 1.05458 1.17546 0.96042 0.91516 0.84111 1.22080 1.01022 0.91645 1.01552 1.21183 0.97921 1.00016 0.91944 1.20914 1.05209 0.93401 0.98059 1.20687 1.00035 0.93908 0.96002 1.20542 1.14354 0.83810 0.93859 1.98329 1.97413 1.10844 1.98560 0.92848 0.94073 0.92089 0.86609 0.94160 0.92220 0.75883 0.80942 0.85712 0.85888 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 10.13 37.16 0.38 -2.61 16 2 C 0.10 2.17 5.28 -4.04 -0.02 2.15 16 3 N -0.45 -11.30 2.51 -120.18 -0.30 -11.60 16 4 C -0.29 -7.91 8.85 -14.92 -0.13 -8.05 16 5 H 0.09 2.50 7.81 -52.49 -0.41 2.10 16 6 C 0.03 0.91 5.11 -17.47 -0.09 0.82 16 7 N -0.88 -23.45 11.31 55.49 0.63 -22.83 16 8 Si 0.93 20.41 29.57 -169.99 -5.03 15.38 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.66 16.21 8.05 -86.92 -0.70 15.51 16 13 O -0.59 -16.04 13.07 5.29 0.07 -15.97 16 14 N -0.69 -14.04 5.11 -14.20 -0.07 -14.11 16 15 C 0.21 3.93 6.53 -83.65 -0.55 3.39 16 16 C -0.14 -2.62 8.82 -39.40 -0.35 -2.97 16 17 C -0.09 -1.34 10.04 -39.60 -0.40 -1.74 16 18 C -0.16 -2.01 10.04 -39.55 -0.40 -2.41 16 19 C -0.09 -1.18 9.82 -39.58 -0.39 -1.57 16 20 C -0.10 -1.53 6.34 -39.32 -0.25 -1.78 16 21 Cl -0.08 -1.18 27.69 -51.86 -1.44 -2.61 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.71 7.98 -51.93 -0.41 0.29 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.12 2.75 5.63 -51.93 -0.29 2.46 16 26 H 0.04 0.81 6.65 -51.93 -0.35 0.47 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.40 7.58 5.25 -40.82 -0.21 7.37 16 29 H 0.17 3.65 5.27 -52.53 -0.28 3.37 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 286.93 15.07 4.32 4.32 Total: -1.00 -29.30 286.93 -7.91 -37.21 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.20 Total: 9.48 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.89 Total: 0.73 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.25 Total: -48.54 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.44 Total: -2.61 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.30 -7.91 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.710 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds