Wall clock time and date at job start Mon Mar 30 2020 08:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35942 * 117.00239 * 2 1 4 4 C 1.38732 * 120.02470 * 0.02562 * 3 2 1 5 5 C 1.38133 * 119.96608 * 179.97438 * 4 3 2 6 6 C 1.38476 * 120.03055 * 359.97428 * 5 4 3 7 7 F 1.35104 * 119.96701 * 180.02562 * 6 5 4 8 8 C 1.38426 * 120.06258 * 359.79702 * 6 5 4 9 9 C 1.38176 * 120.02777 * 0.46040 * 8 6 5 10 10 C 1.50703 * 120.01509 * 179.79349 * 9 8 6 11 11 O 1.45199 * 109.46928 * 359.72048 * 10 9 8 12 12 C 1.34230 * 116.99614 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99717 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.46803 * 179.97438 * 14 12 11 16 16 H 1.07994 * 120.00588 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99779 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00271 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46490 * 60.00291 * 19 17 15 21 21 H 1.48492 * 109.47236 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47080 * 300.00821 * 19 17 15 23 23 H 1.08994 * 109.47230 * 300.00371 * 1 2 3 24 24 H 1.08998 * 109.47012 * 60.00423 * 1 2 3 25 25 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.07992 * 120.02028 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.98132 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.98649 * 180.22622 * 8 6 5 29 29 H 1.09002 * 109.47152 * 239.72080 * 10 9 8 30 30 H 1.09001 * 109.46980 * 119.72181 * 10 9 8 31 31 H 1.09000 * 109.47303 * 300.00327 * 14 12 11 32 32 H 1.09003 * 109.46535 * 60.00663 * 14 12 11 33 33 H 0.96995 * 120.00517 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2912 2.3751 0.0005 5 6 1.9196 3.6052 0.0011 6 6 3.3025 3.6769 0.0016 7 9 3.9158 4.8807 0.0027 8 6 4.0571 2.5164 0.0059 9 6 3.4311 1.2846 0.0000 10 6 4.2529 0.0214 -0.0001 11 8 5.6643 0.3622 -0.0001 12 6 6.5374 -0.6574 0.0004 13 8 6.1355 -1.7968 0.0003 14 6 8.0188 -0.3808 -0.0002 15 6 8.7733 -1.6853 0.0011 16 1 8.2342 -2.6210 0.0018 17 6 10.1521 -1.6842 0.0004 18 7 10.8088 -0.5447 -0.0010 19 14 11.0875 -3.3012 0.0013 20 1 10.7287 -4.0811 -1.2105 21 1 12.5472 -3.0286 0.0009 22 1 10.7299 -4.0792 1.2146 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3195 0.0014 27 1 1.3321 4.5114 0.0019 28 1 5.1355 2.5738 0.0100 29 1 4.0203 -0.5634 -0.8902 30 1 4.0203 -0.5634 0.8898 31 1 8.2815 0.1905 -0.8906 32 1 8.2818 0.1915 0.8895 33 1 11.7788 -0.5439 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049828439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:10:47 Heat of formation + Delta-G solvation = -168.956520 kcal Electronic energy + Delta-G solvation = -19475.011407 eV Core-core repulsion = 15993.969161 eV Total energy + Delta-G solvation = -3481.042246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.83923 -41.61133 -40.98249 -38.41498 -37.40666 -35.21285 -33.41256 -31.32415 -30.88618 -28.37437 -27.69596 -25.89283 -23.49792 -22.81818 -21.78998 -19.18492 -18.89459 -18.33196 -18.18820 -17.62836 -17.51560 -17.12416 -16.81714 -16.38325 -16.16995 -15.68239 -15.38796 -14.98770 -14.62388 -14.41394 -14.12345 -13.78677 -13.53070 -13.14472 -13.14075 -12.88230 -12.75958 -12.61323 -12.07831 -11.92890 -11.87125 -11.84243 -11.55875 -11.22963 -10.66667 -10.10029 -9.14230 -8.29703 -6.40455 0.02227 0.11920 1.36954 1.41601 1.45249 1.52745 1.76581 2.25776 2.41924 2.42413 3.05909 3.18036 3.49591 3.73025 3.99393 4.06366 4.13795 4.20410 4.30431 4.41303 4.44984 4.59018 4.75535 4.79026 4.97458 5.02352 5.06091 5.11047 5.16300 5.44471 5.65296 5.66869 5.95447 6.29601 6.70146 6.96844 7.29093 8.82390 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.003981 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.907174 B = 7031.276491 C = 8068.433644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.166 4.166 5 C -0.100 4.100 6 C 0.046 3.954 7 F -0.147 7.147 8 C -0.108 4.108 9 C -0.111 4.111 10 C 0.116 3.884 11 O -0.362 6.362 12 C 0.474 3.526 13 O -0.538 6.538 14 C 0.033 3.967 15 C -0.548 4.548 16 H 0.063 0.937 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.972 3.028 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.270 1.270 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.057 7.757 0.007 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.079 3.921 4 C -0.184 4.184 5 C -0.118 4.118 6 C 0.027 3.973 7 F -0.126 7.126 8 C -0.127 4.127 9 C -0.112 4.112 10 C 0.042 3.958 11 O -0.279 6.279 12 C 0.319 3.681 13 O -0.427 6.427 14 C -0.004 4.004 15 C -0.586 4.586 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.796 3.204 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.195 1.195 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.197 0.803 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.947 7.353 0.007 24.096 hybrid contribution 0.731 -0.452 0.001 0.860 sum -22.215 6.901 0.007 23.263 Atomic orbital electron populations 1.23474 0.75558 1.05898 1.03068 1.86125 1.24268 1.26087 1.88210 1.18747 0.90210 0.86092 0.97022 1.21372 1.01966 0.89618 1.05486 1.21297 0.91523 1.00266 0.98745 1.17718 0.91842 0.79914 1.07875 1.91479 1.83733 1.42933 1.94465 1.20870 1.01528 0.90383 0.99932 1.18717 0.91137 0.93656 1.07711 1.21444 0.76521 0.94751 1.03038 1.86500 1.17908 1.39054 1.84468 1.24705 0.90629 0.82581 0.70156 1.90490 1.80695 1.24464 1.47027 1.18932 0.81777 0.99412 1.00252 1.21313 0.91895 0.92514 1.52861 0.91844 1.25839 0.98132 1.00689 0.93939 1.70036 1.08671 1.27289 1.50112 0.85389 0.77166 0.78717 0.79110 1.19465 1.19843 1.19471 0.90689 0.90683 0.86715 0.80277 0.81102 0.84459 0.90231 0.90234 0.92769 0.92775 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.98 9.92 -92.90 -0.92 -7.90 16 3 C 0.13 2.80 6.66 22.49 0.15 2.95 16 4 C -0.17 -2.58 9.04 22.36 0.20 -2.38 16 5 C -0.10 -1.70 10.02 22.30 0.22 -1.48 16 6 C 0.05 1.12 7.30 22.37 0.16 1.28 16 7 F -0.15 -3.87 17.27 44.97 0.78 -3.09 16 8 C -0.11 -3.12 9.36 22.30 0.21 -2.91 16 9 C -0.11 -3.18 5.89 -19.77 -0.12 -3.30 16 10 C 0.12 3.97 5.32 71.24 0.38 4.35 16 11 O -0.36 -14.78 8.69 -51.42 -0.45 -15.23 16 12 C 0.47 22.93 7.95 71.24 0.57 23.50 16 13 O -0.54 -28.13 15.21 21.97 0.33 -27.80 16 14 C 0.03 1.79 5.57 29.10 0.16 1.95 16 15 C -0.55 -32.12 8.92 25.60 0.23 -31.90 16 16 H 0.06 3.82 6.76 -2.91 -0.02 3.80 16 17 C 0.01 0.77 5.46 84.65 0.46 1.23 16 18 N -0.92 -54.01 13.29 21.45 0.28 -53.72 16 19 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 24 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 25 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.18 1.31 6.30 -2.91 -0.02 1.30 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.14 4.37 6.99 -2.91 -0.02 4.35 16 29 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 30 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 31 H 0.05 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.05 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -69.22 298.96 6.93 -62.29 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.13 Total: 4.23 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 3.74 Total: -5.45 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.28 Total: -53.72 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -1.03 Total: -50.93 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.22 6.93 -62.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049828439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.664 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds