Wall clock time and date at job start Mon Mar 30 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47598 * 2 1 4 4 C 1.50704 * 109.46903 * 240.00098 * 2 1 3 5 5 H 1.07993 * 120.00169 * 240.00498 * 4 2 1 6 6 C 1.37876 * 119.99548 * 60.00188 * 4 2 1 7 7 N 1.31512 * 120.00514 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99652 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47264 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47135 * 119.99901 * 8 6 4 11 11 H 1.48497 * 109.47089 * 239.99860 * 8 6 4 12 12 C 1.50695 * 109.46998 * 120.00572 * 2 1 3 13 13 O 1.20827 * 120.00127 * 120.00229 * 12 2 1 14 14 O 1.34235 * 119.99917 * 299.99461 * 12 2 1 15 15 C 1.45202 * 116.99699 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46589 * 180.02562 * 15 14 12 17 17 C 1.38235 * 120.01086 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.01656 * 179.70540 * 17 16 15 19 19 C 1.38267 * 120.02701 * 0.04377 * 18 17 16 20 20 C 1.38193 * 120.00988 * 359.97438 * 19 18 17 21 21 C 1.38335 * 120.00097 * 179.72480 * 16 15 14 22 22 Cl 1.73597 * 120.01783 * 0.24590 * 21 16 15 23 23 H 1.09006 * 109.46713 * 299.99802 * 1 2 3 24 24 H 1.09002 * 109.47189 * 59.99454 * 1 2 3 25 25 H 1.08996 * 109.46865 * 180.02562 * 1 2 3 26 26 H 0.97004 * 120.00245 * 180.02562 * 7 6 4 27 27 H 1.08989 * 109.47589 * 60.00190 * 15 14 12 28 28 H 1.09002 * 109.46770 * 299.99501 * 15 14 12 29 29 H 1.07995 * 119.98862 * 359.72708 * 17 16 15 30 30 H 1.08001 * 119.99085 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.99901 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.00844 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 3.1472 -2.2862 -3.6040 10 1 1.1677 -1.5864 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4496 15 6 2.2278 -0.9860 3.5896 16 6 1.7627 -0.3295 4.8639 17 6 0.9649 0.7981 4.8096 18 6 0.5334 1.3967 5.9782 19 6 0.9000 0.8686 7.2024 20 6 1.6978 -0.2583 7.2580 21 6 2.1300 -0.8583 6.0883 22 17 3.1318 -2.2744 6.1574 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7081 1.1610 -3.4844 27 1 3.3171 -0.9849 3.5565 28 1 1.8641 -2.0130 3.5567 29 1 0.6785 1.2111 3.8537 30 1 -0.0903 2.2774 5.9353 31 1 0.5629 1.3370 8.1152 32 1 1.9839 -0.6710 8.2142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049829074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:17 Heat of formation + Delta-G solvation = -79.922411 kcal Electronic energy + Delta-G solvation = -17548.305259 eV Core-core repulsion = 14499.460197 eV Total energy + Delta-G solvation = -3048.845062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94287 -39.11167 -36.56483 -35.84563 -33.90795 -32.18652 -30.85016 -30.55771 -26.59120 -25.22333 -23.34830 -22.59592 -21.44405 -19.73360 -17.36964 -16.76492 -16.12406 -15.96756 -15.69858 -15.26139 -14.98591 -14.25143 -13.93591 -13.89333 -13.28123 -12.89530 -12.60544 -12.15726 -11.76299 -11.65184 -11.60664 -11.30147 -11.06337 -10.85350 -10.77704 -10.71583 -10.40590 -10.24222 -10.07024 -9.17016 -9.05603 -8.99549 -8.78030 -8.47092 -6.12413 -4.17702 0.98315 1.13794 1.99249 3.26365 3.29066 3.31360 3.36567 3.47056 3.48621 4.39769 4.57238 4.73276 4.86759 5.15276 5.21191 5.27221 5.40279 5.49842 5.60514 5.79532 5.99124 6.05270 6.29095 6.36263 6.63555 6.67393 6.83430 6.85340 7.17585 7.41230 7.72159 7.92661 8.11862 8.80718 8.91980 9.48156 10.95021 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.004247 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.500305 B = 6591.900022 C = 7331.534283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.466 3.534 13 O -0.514 6.514 14 O -0.364 6.364 15 C 0.102 3.898 16 C -0.075 4.075 17 C -0.084 4.084 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.034 4.034 22 Cl -0.069 7.069 23 H 0.023 0.977 24 H 0.096 0.904 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 1.020 18.450 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.550 4.550 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.400 6.400 14 O -0.282 6.282 15 C 0.028 3.972 16 C -0.075 4.075 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.060 4.060 22 Cl -0.040 7.040 23 H 0.042 0.958 24 H 0.115 0.885 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.861 0.683 18.304 18.337 hybrid contribution 0.493 -0.688 -0.685 1.089 sum -0.367 -0.005 17.619 17.623 Atomic orbital electron populations 1.21739 0.95553 1.00099 1.01727 1.18779 0.94880 0.96989 0.85420 0.91738 1.21179 1.31865 1.13247 0.88743 0.90554 1.24930 0.94886 0.95009 0.99137 1.69883 1.36549 1.22853 1.23778 0.86331 0.78673 0.79736 0.82144 1.19495 1.20878 1.20875 1.25398 0.76613 0.83304 0.83646 1.90514 1.36206 1.26656 1.86646 1.86557 1.70532 1.55777 1.15354 1.21515 0.99039 0.94967 0.81723 1.19598 0.98766 0.96707 0.92470 1.21189 0.95317 0.93870 0.99839 1.21331 0.99674 1.00117 0.92179 1.21130 0.97933 0.95746 0.98337 1.20962 0.98843 0.96499 0.96756 1.20667 0.99183 0.91913 0.94262 1.98378 1.67872 1.38978 1.98742 0.95797 0.88523 0.94958 0.92738 0.89941 0.89946 0.83483 0.85138 0.85183 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.90 37.16 0.33 -2.76 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.08 2.23 6.76 -52.49 -0.35 1.88 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.47 10.85 7.25 36.00 0.26 11.11 16 13 O -0.51 -13.10 15.21 -18.75 -0.29 -13.39 16 14 O -0.36 -7.09 8.59 -39.27 -0.34 -7.43 16 15 C 0.10 1.70 4.83 36.01 0.17 1.87 16 16 C -0.07 -1.05 5.88 -104.59 -0.62 -1.67 16 17 C -0.08 -1.09 9.38 -39.59 -0.37 -1.46 16 18 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 19 C -0.11 -1.04 10.05 -39.59 -0.40 -1.44 16 20 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 21 C -0.03 -0.42 6.31 -39.49 -0.25 -0.67 16 22 Cl -0.07 -0.84 27.99 -51.86 -1.45 -2.29 16 23 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 24 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 28 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.15 1.98 6.99 -52.49 -0.37 1.62 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -29.42 295.82 -7.85 -37.27 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.55 Total: -1.13 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.29 Total: -9.90 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.63 Total: -23.94 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.62 Total: -20.81 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.45 Total: -2.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.42 -7.85 -37.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049829074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.651 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds