Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47598 * 2 1 4 4 C 1.50704 * 109.46903 * 240.00098 * 2 1 3 5 5 H 1.07993 * 120.00169 * 240.00498 * 4 2 1 6 6 C 1.37876 * 119.99548 * 60.00188 * 4 2 1 7 7 N 1.31512 * 120.00514 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99652 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47264 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47135 * 119.99901 * 8 6 4 11 11 H 1.48497 * 109.47089 * 239.99860 * 8 6 4 12 12 C 1.50695 * 109.46998 * 120.00572 * 2 1 3 13 13 O 1.20827 * 120.00127 * 120.00229 * 12 2 1 14 14 O 1.34235 * 119.99917 * 299.99461 * 12 2 1 15 15 C 1.45202 * 116.99699 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46589 * 180.02562 * 15 14 12 17 17 C 1.38235 * 120.01086 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.01656 * 179.70540 * 17 16 15 19 19 C 1.38267 * 120.02701 * 0.04377 * 18 17 16 20 20 C 1.38193 * 120.00988 * 359.97438 * 19 18 17 21 21 C 1.38335 * 120.00097 * 179.72480 * 16 15 14 22 22 Cl 1.73597 * 120.01783 * 0.24590 * 21 16 15 23 23 H 1.09006 * 109.46713 * 299.99802 * 1 2 3 24 24 H 1.09002 * 109.47189 * 59.99454 * 1 2 3 25 25 H 1.08996 * 109.46865 * 180.02562 * 1 2 3 26 26 H 0.97004 * 120.00245 * 180.02562 * 7 6 4 27 27 H 1.08989 * 109.47589 * 60.00190 * 15 14 12 28 28 H 1.09002 * 109.46770 * 299.99501 * 15 14 12 29 29 H 1.07995 * 119.98862 * 359.72708 * 17 16 15 30 30 H 1.08001 * 119.99085 * 180.02562 * 18 17 16 31 31 H 1.07998 * 119.99901 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.00844 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 3.1472 -2.2862 -3.6040 10 1 1.1677 -1.5864 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4496 15 6 2.2278 -0.9860 3.5896 16 6 1.7627 -0.3295 4.8639 17 6 0.9649 0.7981 4.8096 18 6 0.5334 1.3967 5.9782 19 6 0.9000 0.8686 7.2024 20 6 1.6978 -0.2583 7.2580 21 6 2.1300 -0.8583 6.0883 22 17 3.1318 -2.2744 6.1574 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7081 1.1610 -3.4844 27 1 3.3171 -0.9849 3.5565 28 1 1.8641 -2.0130 3.5567 29 1 0.6785 1.2111 3.8537 30 1 -0.0903 2.2774 5.9353 31 1 0.5629 1.3370 8.1152 32 1 1.9839 -0.6710 8.2142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049829074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = -94.397199 kcal Electronic energy + Delta-G solvation = -17548.932933 eV Core-core repulsion = 14499.460197 eV Total energy + Delta-G solvation = -3049.472736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51491 -40.25270 -37.59960 -37.44577 -35.94126 -33.36170 -32.48133 -31.71191 -27.83494 -27.27336 -24.99530 -23.67384 -22.50031 -21.50153 -18.69488 -18.37832 -17.99928 -17.53070 -17.24253 -16.42030 -16.22271 -15.81150 -15.30516 -14.77862 -14.68036 -14.58983 -14.06615 -13.66142 -13.40448 -12.99812 -12.77425 -12.68768 -12.60216 -12.54404 -12.31025 -12.25145 -12.07206 -11.90164 -11.77885 -11.11333 -11.09175 -10.54178 -9.89890 -9.70164 -8.21028 -6.34011 0.09406 0.26495 1.06388 1.38511 1.41674 1.42678 1.54656 1.76373 2.43250 2.61908 3.09223 3.48323 3.83303 4.01184 4.11779 4.12596 4.27763 4.38559 4.50860 4.66082 4.68687 4.88900 4.96499 4.98139 5.22269 5.25853 5.41624 5.42243 5.54671 5.68894 5.84354 5.88022 6.09589 6.72365 6.98613 7.34940 8.85557 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.004247 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.500305 B = 6591.900022 C = 7331.534283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.542 6.542 14 O -0.353 6.353 15 C 0.104 3.896 16 C -0.099 4.099 17 C -0.102 4.102 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.109 4.109 21 C -0.044 4.044 22 Cl -0.075 7.075 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.269 0.731 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 1.808 20.156 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.787 3.213 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.319 3.681 13 O -0.431 6.431 14 O -0.270 6.270 15 C 0.030 3.970 16 C -0.099 4.099 17 C -0.120 4.120 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.071 4.071 22 Cl -0.046 7.046 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.187 0.813 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.628 1.493 20.030 20.151 hybrid contribution 0.703 -0.871 -1.075 1.552 sum -0.926 0.622 18.955 18.988 Atomic orbital electron populations 1.21568 0.94135 0.99917 1.02191 1.18702 0.96043 0.96198 0.85751 0.92782 1.21281 1.32676 1.13288 0.90547 0.92705 1.25605 0.94861 0.95635 1.01461 1.69953 1.36562 1.23325 1.24726 0.85437 0.78396 0.78520 0.78904 1.20280 1.19733 1.19797 1.24963 0.76012 0.82606 0.84551 1.90493 1.37435 1.27829 1.87325 1.86503 1.70004 1.55585 1.14952 1.21640 0.98733 0.94865 0.81786 1.19440 1.00939 0.98026 0.91538 1.21213 0.96089 0.94064 1.00675 1.21654 0.99112 1.00501 0.91494 1.21604 0.96072 0.94658 0.99369 1.21342 0.98118 0.96460 0.96793 1.20809 0.99644 0.92093 0.94513 1.98374 1.68114 1.39383 1.98734 0.92970 0.90265 0.95357 0.92207 0.90625 0.90617 0.84786 0.82404 0.81269 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.90 71.98 0.64 -4.97 16 2 C 0.05 2.67 2.74 -12.28 -0.03 2.64 16 3 H 0.05 2.86 8.14 -2.39 -0.02 2.84 16 4 C -0.54 -30.85 8.37 25.60 0.21 -30.63 16 5 H 0.05 3.31 6.76 -2.91 -0.02 3.29 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -49.99 11.32 21.45 0.24 -49.74 16 8 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.47 22.64 7.25 71.23 0.52 23.16 16 13 O -0.54 -28.57 15.21 21.96 0.33 -28.23 16 14 O -0.35 -14.04 8.59 -51.46 -0.44 -14.48 16 15 C 0.10 3.54 4.83 71.24 0.34 3.88 16 16 C -0.10 -2.74 5.88 -19.84 -0.12 -2.86 16 17 C -0.10 -2.53 9.38 22.26 0.21 -2.32 16 18 C -0.11 -1.90 10.05 22.27 0.22 -1.68 16 19 C -0.10 -1.40 10.05 22.27 0.22 -1.18 16 20 C -0.11 -1.87 9.83 22.29 0.22 -1.65 16 21 C -0.04 -1.04 6.31 22.33 0.14 -0.90 16 22 Cl -0.07 -1.80 27.99 -2.72 -0.08 -1.88 16 23 H 0.05 2.08 8.11 -2.38 -0.02 2.06 16 24 H 0.08 3.99 6.07 -2.39 -0.01 3.98 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 27 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16 28 H 0.08 2.64 8.13 -2.39 -0.02 2.62 16 29 H 0.13 3.59 6.99 -2.91 -0.02 3.57 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -63.86 295.82 6.24 -57.61 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.13 Total: 5.51 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 3.03 Total: -14.73 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.24 Total: -49.74 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.11 Total: -42.72 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -63.86 6.24 -57.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049829074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.784 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds