Wall clock time and date at job start Mon Mar 30 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38258 * 119.99155 * 269.72108 * 16 15 14 18 18 C 1.38223 * 120.02501 * 179.76553 * 17 16 15 19 19 C 1.38236 * 120.01214 * 0.51141 * 18 17 16 20 20 C 1.38326 * 119.98622 * 359.74391 * 19 18 17 21 21 Cl 1.73603 * 120.01588 * 180.02562 * 20 19 18 22 22 C 1.38198 * 119.99380 * 89.99772 * 16 15 14 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.08002 * 119.98992 * 0.02562 * 17 16 15 30 30 H 1.07998 * 119.99500 * 180.25422 * 18 17 16 31 31 H 1.08002 * 120.00856 * 179.76014 * 19 18 17 32 32 H 1.08000 * 120.00224 * 359.95414 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 6 2.5312 0.6605 5.4510 18 6 2.1038 1.2672 6.6171 19 6 0.9137 0.8780 7.2029 20 6 0.1479 -0.1149 6.6190 21 17 -1.3472 -0.6037 7.3536 22 6 0.5736 -0.7182 5.4487 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 3.4630 0.9621 4.9959 30 1 2.7017 2.0424 7.0730 31 1 0.5817 1.3494 8.1162 32 1 -0.0240 -1.4932 4.9921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049829078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:24 Heat of formation + Delta-G solvation = -94.911531 kcal Electronic energy + Delta-G solvation = -17345.196398 eV Core-core repulsion = 14295.701359 eV Total energy + Delta-G solvation = -3049.495039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.45403 -40.26765 -37.69232 -37.26713 -35.92676 -33.33294 -32.48916 -31.76706 -27.83861 -27.27211 -24.87561 -23.72108 -22.54156 -21.62608 -18.68721 -18.23729 -18.01259 -17.47981 -17.24930 -16.52450 -16.32799 -15.96455 -14.84861 -14.76149 -14.69199 -14.48666 -14.15281 -13.66038 -13.42298 -12.98574 -12.81359 -12.62674 -12.59299 -12.51398 -12.39127 -12.28695 -12.05444 -11.84916 -11.65416 -11.11682 -11.09178 -10.54003 -10.01789 -9.74819 -8.20079 -6.33556 0.00778 0.17951 1.09061 1.41033 1.43510 1.44124 1.54997 1.92093 2.43214 2.71716 3.10118 3.51213 3.74110 3.96862 4.10112 4.14677 4.27718 4.39511 4.47210 4.67353 4.68521 4.84828 4.89472 4.98633 5.15891 5.28375 5.36160 5.42529 5.46105 5.68511 5.75077 5.87754 6.09708 6.73024 7.02649 7.35452 8.86389 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.003689 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.116833 B = 7588.979318 C = 7868.728740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.474 3.526 13 O -0.541 6.541 14 O -0.358 6.358 15 C 0.098 3.902 16 C -0.092 4.092 17 C -0.097 4.097 18 C -0.102 4.102 19 C -0.101 4.101 20 C -0.048 4.048 21 Cl -0.069 7.069 22 C -0.101 4.101 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.268 0.732 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 1.680 20.033 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.276 6.276 15 C 0.025 3.975 16 C -0.092 4.092 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.075 4.075 21 Cl -0.041 7.041 22 C -0.119 4.119 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.660 1.448 19.973 20.036 hybrid contribution 0.153 -0.734 -0.902 1.173 sum -0.507 0.714 19.071 19.091 Atomic orbital electron populations 1.21556 0.94463 0.99875 1.01915 1.18693 0.95846 0.96234 0.86170 0.93033 1.21261 1.32675 1.13336 0.90465 0.92468 1.25644 0.94844 0.95649 1.01578 1.69963 1.36573 1.23445 1.24764 0.85465 0.78395 0.78761 0.78506 1.19767 1.20020 1.19913 1.24841 0.76003 0.82555 0.84651 1.90479 1.37478 1.27717 1.87365 1.86641 1.70104 1.55883 1.14926 1.21882 0.99466 0.94973 0.81180 1.19450 0.95862 0.99096 0.94809 1.21490 1.00314 0.93876 0.95854 1.21487 0.95832 0.99906 0.94774 1.21467 0.94244 0.95244 1.00938 1.21000 0.90283 1.00023 0.96157 1.98371 1.32469 1.91079 1.82139 1.21049 0.95762 1.00514 0.94619 0.93487 0.90364 0.95226 0.92244 0.90714 0.89833 0.83848 0.81376 0.82331 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.90 71.98 0.64 -5.09 16 2 C 0.05 2.56 2.74 -12.29 -0.03 2.52 16 3 H 0.05 2.76 8.14 -2.38 -0.02 2.74 16 4 C -0.54 -30.69 8.37 25.60 0.21 -30.47 16 5 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.25 5.30 84.66 0.45 1.70 16 7 N -0.91 -50.46 11.32 21.45 0.24 -50.22 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.47 22.34 7.25 71.24 0.52 22.85 16 13 O -0.54 -27.66 15.21 21.98 0.33 -27.32 16 14 O -0.36 -14.08 10.11 -51.39 -0.52 -14.60 16 15 C 0.10 3.04 5.59 71.24 0.40 3.44 16 16 C -0.09 -2.33 5.52 -19.87 -0.11 -2.44 16 17 C -0.10 -1.98 9.70 22.27 0.22 -1.77 16 18 C -0.10 -1.59 10.05 22.27 0.22 -1.36 16 19 C -0.10 -1.66 9.83 22.29 0.22 -1.44 16 20 C -0.05 -1.01 6.32 22.32 0.14 -0.87 16 21 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 22 C -0.10 -2.44 9.49 22.29 0.21 -2.23 16 23 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 24 H 0.08 4.02 6.07 -2.39 -0.01 4.01 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 28 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 29 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -63.29 299.43 6.22 -57.08 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.13 Total: 5.91 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.09 Total: -15.16 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.24 Total: -50.22 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.19 Total: -41.92 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -63.29 6.22 -57.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049829078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.836 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds