Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46758 * 2 1 4 4 C 1.50700 * 109.47194 * 119.99798 * 2 1 3 5 5 H 1.07999 * 119.99256 * 116.69007 * 4 2 1 6 6 C 1.37868 * 120.00303 * 296.69370 * 4 2 1 7 7 N 1.31520 * 120.00090 * 352.44338 * 6 4 2 8 8 Si 1.86805 * 120.00195 * 172.71443 * 6 4 2 9 9 H 1.48503 * 109.47054 * 264.79579 * 8 6 4 10 10 H 1.48500 * 109.46575 * 24.79344 * 8 6 4 11 11 H 1.48491 * 109.47049 * 144.79629 * 8 6 4 12 12 C 1.50697 * 109.47254 * 240.00375 * 2 1 3 13 13 O 1.20825 * 119.99929 * 239.99773 * 12 2 1 14 14 O 1.34231 * 120.00011 * 59.99808 * 12 2 1 15 15 C 1.45204 * 116.99927 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.47016 * 179.97438 * 15 14 12 17 17 C 1.38238 * 119.98635 * 269.72463 * 16 15 14 18 18 C 1.38219 * 120.00854 * 179.73046 * 17 16 15 19 19 C 1.38355 * 119.98831 * 0.54095 * 18 17 16 20 20 Cl 1.73600 * 120.01467 * 179.70730 * 19 18 17 21 21 C 1.38350 * 119.97393 * 359.73509 * 19 18 17 22 22 C 1.38218 * 119.98640 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.47025 * 297.77973 * 1 2 3 24 24 H 1.09001 * 109.47192 * 57.78356 * 1 2 3 25 25 H 1.08997 * 109.46811 * 177.78416 * 1 2 3 26 26 H 0.96998 * 120.00239 * 180.27341 * 7 6 4 27 27 H 1.09004 * 109.46741 * 299.99980 * 15 14 12 28 28 H 1.08998 * 109.46870 * 59.99730 * 15 14 12 29 29 H 1.07993 * 119.99818 * 0.02562 * 17 16 15 30 30 H 1.08003 * 120.01007 * 180.27707 * 18 17 16 31 31 H 1.07996 * 120.00858 * 179.97438 * 21 19 18 32 32 H 1.07994 * 119.99572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6085 -1.6186 1.1322 6 6 1.7566 -0.2009 2.4815 7 7 1.1861 0.9781 2.6003 8 14 2.1999 -1.1820 4.0082 9 1 1.0172 -1.9593 4.4579 10 1 3.3131 -2.1127 3.6923 11 1 2.6219 -0.2538 5.0877 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6927 -1.1196 14 8 1.7081 -0.2517 -2.4496 15 6 2.2269 -0.9861 -3.5897 16 6 1.7619 -0.3296 -4.8640 17 6 0.5740 -0.7238 -5.4507 18 6 0.1443 -0.1180 -6.6165 19 6 0.9090 0.8752 -7.2021 20 17 0.3738 1.6312 -8.6703 21 6 2.1007 1.2653 -6.6174 22 6 2.5263 0.6631 -5.4485 23 1 -0.3633 0.4790 0.9092 24 1 -0.3633 0.5479 -0.8694 25 1 -0.3633 -1.0269 -0.0397 26 1 0.9956 1.3383 3.4806 27 1 3.3164 -0.9858 -3.5569 28 1 1.8627 -2.0129 -3.5566 29 1 -0.0209 -1.5018 -4.9957 30 1 -0.7860 -0.4229 -7.0725 31 1 2.6982 2.0403 -7.0743 32 1 3.4567 0.9672 -4.9922 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049829081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = -96.034087 kcal Electronic energy + Delta-G solvation = -17269.348539 eV Core-core repulsion = 14219.804822 eV Total energy + Delta-G solvation = -3049.543717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43645 -40.26709 -37.72506 -37.22634 -35.88950 -33.17836 -32.44960 -32.11218 -27.66771 -27.23233 -24.87195 -23.88902 -22.46319 -21.61491 -18.67714 -18.25965 -18.01282 -17.54804 -17.30920 -16.43933 -16.30105 -15.80605 -14.79138 -14.77795 -14.57181 -14.50038 -14.22019 -13.78008 -13.52263 -12.95706 -12.88311 -12.64366 -12.58041 -12.55983 -12.31970 -12.29600 -12.05118 -11.82902 -11.61794 -11.13955 -11.02767 -10.54526 -10.06474 -9.72434 -8.22797 -6.32621 -0.07687 0.27119 1.08663 1.41612 1.43470 1.44675 1.54926 1.91123 2.43207 2.71836 3.09784 3.60099 3.68133 3.89951 4.06580 4.15115 4.32516 4.47131 4.50437 4.64293 4.68119 4.87432 4.94644 4.98087 5.10837 5.17407 5.37475 5.46035 5.46559 5.67898 5.72218 5.81221 6.07455 6.74264 7.04298 7.35596 8.86482 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.048160 B = 0.003337 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.256250 B = 8388.341902 C = 8580.556595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.475 3.525 13 O -0.541 6.541 14 O -0.358 6.358 15 C 0.097 3.903 16 C -0.099 4.099 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.035 4.035 20 Cl -0.066 7.066 21 C -0.114 4.114 22 C -0.089 4.089 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.268 0.732 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 0.521 -19.791 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.030 3.970 3 H 0.070 0.930 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.275 6.275 15 C 0.024 3.976 16 C -0.099 4.099 17 C -0.106 4.106 18 C -0.132 4.132 19 C -0.062 4.062 20 Cl -0.037 7.037 21 C -0.133 4.133 22 C -0.108 4.108 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.773 0.422 -19.804 19.888 hybrid contribution 0.351 -0.423 0.772 0.948 sum -1.421 -0.001 -19.032 19.085 Atomic orbital electron populations 1.21497 0.94400 0.99906 1.01531 1.18680 0.95783 0.96341 0.86206 0.93048 1.21253 1.35476 1.10520 0.90506 0.92456 1.25630 0.94770 0.95620 1.01582 1.70024 1.43007 1.16880 1.24915 0.85497 0.78658 0.78603 0.78660 1.19562 1.20015 1.20146 1.24804 0.76049 0.82493 0.84650 1.90483 1.37433 1.27756 1.87369 1.86644 1.70085 1.55897 1.14905 1.21900 0.99351 0.95167 0.81179 1.19670 0.96768 0.98636 0.94818 1.21260 0.94735 0.99803 0.94824 1.21264 1.00725 0.95496 0.95732 1.21170 0.96643 0.97756 0.90623 1.98374 1.89977 1.81046 1.34269 1.21256 0.95396 1.00919 0.95692 1.21262 1.00462 0.94193 0.94836 0.91758 0.93012 0.94564 0.92262 0.90320 0.90185 0.83650 0.82725 0.82793 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.96 71.98 0.65 -4.67 16 2 C 0.05 2.49 2.63 -12.29 -0.03 2.46 16 3 H 0.05 2.77 8.14 -2.39 -0.02 2.75 16 4 C -0.54 -30.49 8.32 25.60 0.21 -30.28 16 5 H 0.06 3.40 6.77 -2.91 -0.02 3.38 16 6 C 0.02 1.33 5.21 84.65 0.44 1.77 16 7 N -0.91 -50.66 11.92 21.44 0.26 -50.41 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 C 0.47 21.98 7.25 71.23 0.52 22.49 16 13 O -0.54 -27.27 15.21 21.97 0.33 -26.94 16 14 O -0.36 -13.70 10.13 -51.43 -0.52 -14.22 16 15 C 0.10 2.90 5.59 71.24 0.40 3.30 16 16 C -0.10 -2.40 5.52 -19.86 -0.11 -2.51 16 17 C -0.09 -1.86 9.70 22.27 0.22 -1.64 16 18 C -0.11 -2.11 9.83 22.29 0.22 -1.89 16 19 C -0.04 -0.67 6.32 22.32 0.14 -0.53 16 20 Cl -0.07 -1.12 28.96 -2.72 -0.08 -1.20 16 21 C -0.11 -2.14 9.83 22.29 0.22 -1.92 16 22 C -0.09 -1.91 9.70 22.27 0.22 -1.69 16 23 H 0.06 3.20 6.59 -2.39 -0.02 3.18 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.08 2.27 8.08 -2.38 -0.02 2.25 16 28 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -62.37 300.42 6.22 -56.15 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.12 Total: 6.15 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 3.08 Total: -15.11 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.26 Total: -50.41 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.19 Total: -41.16 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -62.37 6.22 -56.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049829081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.883 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds