Wall clock time and date at job start Mon Mar 30 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 C 1.38239 * 119.98685 * 269.72661 * 16 15 14 18 18 C 1.38211 * 120.01593 * 179.72955 * 17 16 15 19 19 C 1.38360 * 119.98077 * 0.54018 * 18 17 16 20 20 Cl 1.73598 * 120.00801 * 179.70486 * 19 18 17 21 21 C 1.38348 * 119.97329 * 359.73201 * 19 18 17 22 22 C 1.38213 * 119.99166 * 359.97438 * 21 19 18 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.08006 * 119.99072 * 359.97438 * 17 16 15 30 30 H 1.08000 * 120.01311 * 180.27008 * 18 17 16 31 31 H 1.08004 * 120.00650 * 179.97438 * 21 19 18 32 32 H 1.07995 * 119.99722 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 6 2.5311 0.6605 5.4508 18 6 2.1033 1.2675 6.6164 19 6 0.9120 0.8775 7.2021 20 17 0.3777 1.6341 8.6703 21 6 0.1471 -0.1161 6.6174 22 6 0.5730 -0.7181 5.4485 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 3.4633 0.9615 4.9960 30 1 2.7008 2.0430 7.0724 31 1 -0.7828 -0.4212 7.0744 32 1 -0.0239 -1.4940 4.9923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049829082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:37 Heat of formation + Delta-G solvation = -94.854008 kcal Electronic energy + Delta-G solvation = -17275.367968 eV Core-core repulsion = 14225.875424 eV Total energy + Delta-G solvation = -3049.492545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43922 -40.26918 -37.72750 -37.22932 -35.91895 -33.16377 -32.40538 -32.11426 -27.66523 -27.25722 -24.83862 -23.89015 -22.46387 -21.61162 -18.67267 -18.25849 -18.01882 -17.54431 -17.31552 -16.45638 -16.30480 -15.81302 -14.79781 -14.78520 -14.57441 -14.50248 -14.20807 -13.78284 -13.43769 -12.98042 -12.83877 -12.62159 -12.61184 -12.55967 -12.29976 -12.28049 -12.04346 -11.83006 -11.61978 -11.11877 -11.07032 -10.53319 -10.06668 -9.72610 -8.19675 -6.33278 -0.07859 0.26983 1.08540 1.42530 1.43741 1.45922 1.53193 1.90915 2.43188 2.71766 3.10487 3.59912 3.67926 3.89783 4.06366 4.15124 4.32713 4.47458 4.50255 4.64118 4.69370 4.90592 4.94462 4.99914 5.10704 5.17230 5.37814 5.45928 5.47177 5.69012 5.72070 5.88855 6.10620 6.73185 7.04097 7.35721 8.86532 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.048228 B = 0.003340 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.430267 B = 8382.163176 C = 8590.480183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.474 3.526 13 O -0.541 6.541 14 O -0.358 6.358 15 C 0.097 3.903 16 C -0.099 4.099 17 C -0.089 4.089 18 C -0.114 4.114 19 C -0.035 4.035 20 Cl -0.065 7.065 21 C -0.114 4.114 22 C -0.088 4.088 23 H 0.030 0.970 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.268 0.732 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 0.945 19.691 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.431 6.431 14 O -0.275 6.275 15 C 0.024 3.976 16 C -0.099 4.099 17 C -0.107 4.107 18 C -0.132 4.132 19 C -0.062 4.062 20 Cl -0.037 7.037 21 C -0.132 4.132 22 C -0.107 4.107 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.145 0.835 19.699 19.750 hybrid contribution 0.396 -0.432 -0.739 0.944 sum -0.749 0.403 18.960 18.979 Atomic orbital electron populations 1.21557 0.94388 0.99933 1.01937 1.18679 0.95907 0.96147 0.86174 0.93184 1.21247 1.32740 1.13375 0.90505 0.92435 1.25643 0.94861 0.95633 1.01580 1.69956 1.36581 1.23403 1.24825 0.85528 0.78743 0.78685 0.78222 1.19954 1.19880 1.19838 1.24819 0.76002 0.82533 0.84666 1.90479 1.37465 1.27746 1.87375 1.86641 1.70063 1.55923 1.14910 1.21901 0.99360 0.95154 0.81181 1.19671 0.96706 0.98707 0.94816 1.21261 1.00455 0.94147 0.94862 1.21260 0.95371 1.00885 0.95729 1.21171 0.96675 0.97717 0.90626 1.98374 1.90013 1.81007 1.34260 1.21259 1.00741 0.95544 0.95681 1.21260 0.94774 0.99818 0.94809 0.95119 0.93374 0.90450 0.92240 0.90245 0.90263 0.83733 0.82759 0.82743 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16 2 C 0.05 2.55 2.74 -12.29 -0.03 2.52 16 3 H 0.05 2.67 8.14 -2.38 -0.02 2.65 16 4 C -0.54 -30.59 8.37 25.60 0.21 -30.37 16 5 H 0.06 3.40 6.76 -2.91 -0.02 3.38 16 6 C 0.02 1.25 5.30 84.66 0.45 1.70 16 7 N -0.91 -50.35 11.32 21.45 0.24 -50.10 16 8 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 C 0.47 22.04 7.25 71.24 0.52 22.56 16 13 O -0.54 -27.32 15.21 21.98 0.33 -26.99 16 14 O -0.36 -13.77 10.11 -51.39 -0.52 -14.29 16 15 C 0.10 2.91 5.59 71.24 0.40 3.31 16 16 C -0.10 -2.41 5.52 -19.86 -0.11 -2.52 16 17 C -0.09 -1.90 9.70 22.26 0.22 -1.68 16 18 C -0.11 -2.13 9.83 22.29 0.22 -1.91 16 19 C -0.04 -0.67 6.32 22.33 0.14 -0.53 16 20 Cl -0.07 -1.12 28.96 -2.72 -0.08 -1.20 16 21 C -0.11 -2.12 9.83 22.29 0.22 -1.90 16 22 C -0.09 -1.88 9.70 22.26 0.22 -1.67 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 25 H 0.08 3.94 6.07 -2.39 -0.01 3.92 16 26 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 28 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 29 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.05 299.43 6.22 -55.83 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.13 Total: 6.69 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 3.09 Total: -15.52 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.24 Total: -50.10 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.19 Total: -41.27 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -62.05 6.22 -55.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049829082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.022 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds