Wall clock time and date at job start Mon Mar 30 2020 08:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48501 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47288 * 300.00309 * 3 2 1 6 6 H 1.48501 * 109.47120 * 60.00238 * 3 2 1 7 7 C 1.37873 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99916 * 173.40096 * 7 2 1 9 9 C 1.50697 * 120.00200 * 353.40122 * 7 2 1 10 10 H 1.09000 * 109.47191 * 331.14136 * 9 7 2 11 11 C 1.50707 * 109.46899 * 211.14069 * 9 7 2 12 12 O 1.20815 * 120.00020 * 267.50195 * 11 9 7 13 13 C 1.47913 * 119.99781 * 87.50753 * 11 9 7 14 14 C 1.39736 * 120.56869 * 179.72226 * 13 11 9 15 15 C 1.38793 * 118.23315 * 179.73475 * 14 13 11 16 16 N 1.32177 * 119.15436 * 0.53515 * 15 14 13 17 17 C 1.31911 * 121.08280 * 359.72493 * 16 15 14 18 18 N 1.31538 * 121.94900 * 0.02562 * 17 16 15 19 19 C 1.50691 * 109.47254 * 91.14340 * 9 7 2 20 20 C 1.38238 * 120.00471 * 52.64449 * 19 9 7 21 21 C 1.38239 * 120.00422 * 179.79045 * 20 19 9 22 22 C 1.38230 * 119.99590 * 0.43835 * 21 20 19 23 23 C 1.38231 * 120.00450 * 359.81213 * 22 21 20 24 24 C 1.38236 * 120.00291 * 232.91314 * 19 9 7 25 25 H 0.96998 * 120.00414 * 183.67190 * 1 2 3 26 26 H 1.08002 * 120.88132 * 359.97084 * 14 13 11 27 27 H 1.08003 * 120.41961 * 180.27734 * 15 14 13 28 28 H 1.08001 * 119.02838 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.99854 * 359.97438 * 20 19 9 30 30 H 1.07994 * 120.00086 * 180.27204 * 21 20 19 31 31 H 1.08002 * 119.99882 * 179.83145 * 22 21 20 32 32 H 1.08000 * 120.00559 * 180.02562 * 23 22 21 33 33 H 1.08007 * 119.99448 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0792 -1.1971 -0.1080 9 6 1.2584 -2.4949 0.1489 10 1 0.3510 -2.3287 0.7295 11 6 2.1326 -3.4966 0.8585 12 8 2.8272 -4.2514 0.2201 13 6 2.1400 -3.5558 2.3364 14 6 2.9415 -4.4838 3.0064 15 6 2.9152 -4.4933 4.3941 16 7 2.1316 -3.6390 5.0291 17 6 1.3828 -2.7791 4.3658 18 7 1.3781 -2.7293 3.0514 19 6 0.8928 -3.0237 -1.2140 20 6 1.8673 -3.1675 -2.1839 21 6 1.5327 -3.6567 -3.4328 22 6 0.2220 -3.9935 -3.7147 23 6 -0.7534 -3.8448 -2.7466 24 6 -0.4180 -3.3597 -1.4963 25 1 -0.4851 -0.8383 0.0538 26 1 3.5678 -5.1728 2.4591 27 1 3.5241 -5.1926 4.9478 28 1 0.7545 -2.0961 4.9183 29 1 2.8906 -2.9005 -1.9650 30 1 2.2948 -3.7732 -4.1891 31 1 -0.0399 -4.3731 -4.6913 32 1 -1.7774 -4.1083 -2.9666 33 1 -1.1801 -3.2436 -0.7398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070096609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:19:15 Heat of formation + Delta-G solvation = 36.883174 kcal Electronic energy + Delta-G solvation = -19513.890412 eV Core-core repulsion = 16504.836021 eV Total energy + Delta-G solvation = -3009.054391 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86272 -39.14689 -37.76560 -34.11681 -33.47201 -31.87228 -30.94010 -30.09561 -27.72876 -25.26202 -24.19488 -23.49786 -21.71035 -21.23283 -19.70432 -17.46268 -17.33438 -16.62957 -15.90349 -15.30426 -14.95052 -14.70249 -14.58643 -14.05199 -13.85218 -13.60208 -13.47543 -13.30737 -12.62375 -12.32354 -12.08989 -11.73081 -10.98384 -10.85865 -10.75326 -10.55713 -10.37585 -10.22942 -10.13661 -9.57755 -9.55632 -8.97935 -8.81286 -8.51700 -8.10702 -7.72605 -6.55120 -4.26834 0.66839 1.11626 2.19051 2.24311 2.86278 3.37783 3.40650 3.53441 4.02193 4.12975 4.24017 4.40970 4.44466 4.69049 5.08372 5.11060 5.22682 5.54406 5.59477 5.62757 5.65811 5.78990 6.06345 6.22982 6.34469 6.41082 6.46159 6.63280 6.82248 6.93696 7.04780 7.21914 7.28993 7.55578 7.78656 7.91340 7.99653 8.22197 8.29303 8.65547 9.43197 10.85261 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.008319 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.833996 B = 3365.059644 C = 4652.147646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.580 4.580 8 H 0.054 0.946 9 C 0.033 3.967 10 H 0.081 0.919 11 C 0.423 3.577 12 O -0.456 6.456 13 C 0.120 3.880 14 C -0.189 4.189 15 C 0.138 3.862 16 N -0.516 5.516 17 C 0.284 3.716 18 N -0.455 5.455 19 C -0.040 4.040 20 C -0.079 4.079 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.130 4.130 24 C -0.127 4.127 25 H 0.275 0.725 26 H 0.153 0.847 27 H 0.169 0.831 28 H 0.199 0.801 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 -7.339 3.448 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.171 4.171 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.617 4.617 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.099 0.901 11 C 0.300 3.700 12 O -0.328 6.328 13 C -0.026 4.026 14 C -0.211 4.211 15 C -0.029 4.029 16 N -0.231 5.231 17 C -0.004 4.004 18 N -0.171 5.171 19 C -0.041 4.041 20 C -0.097 4.097 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.146 4.146 25 H 0.087 0.913 26 H 0.170 0.830 27 H 0.186 0.814 28 H 0.216 0.784 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.786 -5.470 3.506 6.738 hybrid contribution 0.718 -2.092 -0.307 2.233 sum 2.504 -7.562 3.199 8.585 Atomic orbital electron populations 1.70707 1.06801 1.31456 1.43078 1.25803 0.96374 1.02323 0.92589 0.83481 0.74545 0.74672 0.77236 1.21429 1.21102 1.20978 1.21423 0.94597 0.89031 1.56632 0.92729 1.18385 0.97488 0.93335 0.89377 0.90071 1.23130 0.80994 0.80738 0.85177 1.90312 1.37031 1.37841 1.67591 1.22695 0.91423 0.90456 0.98021 1.23166 1.00587 1.00630 0.96708 1.23201 0.93725 0.94636 0.91382 1.68309 1.06871 1.05444 1.42452 1.25088 0.93888 0.93897 0.87550 1.68618 1.19228 1.20873 1.08397 1.20430 0.92632 0.93167 0.97856 1.20916 0.99662 0.96916 0.92167 1.21030 0.96004 1.01169 0.97001 1.20856 0.93586 1.03158 0.98650 1.20911 0.98422 1.01427 0.94031 1.21027 0.96297 1.00388 0.96850 0.91313 0.82966 0.81360 0.78447 0.86508 0.87287 0.87445 0.87308 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 13.62 55.43 0.76 -24.13 16 2 C 0.04 0.99 5.45 -17.82 -0.10 0.89 16 3 Si 1.07 24.30 29.91 -169.99 -5.08 19.22 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.58 -15.17 7.60 -34.44 -0.26 -15.44 16 8 H 0.05 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.03 0.80 1.71 -94.08 -0.16 0.64 16 10 H 0.08 2.03 6.02 -51.93 -0.31 1.72 16 11 C 0.42 9.28 6.20 -30.34 -0.19 9.09 16 12 O -0.46 -10.19 15.23 5.95 0.09 -10.09 16 13 C 0.12 2.32 6.77 -82.74 -0.56 1.76 16 14 C -0.19 -2.90 9.72 -38.82 -0.38 -3.28 16 15 C 0.14 1.81 11.31 -17.20 -0.19 1.61 16 16 N -0.52 -7.59 10.42 -14.60 -0.15 -7.74 16 17 C 0.28 4.48 12.27 -92.27 -1.13 3.35 16 18 N -0.46 -8.77 9.66 -11.22 -0.11 -8.88 16 19 C -0.04 -0.93 4.58 -104.63 -0.48 -1.41 16 20 C -0.08 -1.74 8.05 -39.58 -0.32 -2.06 16 21 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 22 C -0.14 -2.59 10.05 -39.59 -0.40 -2.99 16 23 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 24 C -0.13 -2.69 9.67 -39.58 -0.38 -3.07 16 25 H 0.27 7.64 6.67 -40.82 -0.27 7.37 16 26 H 0.15 2.08 7.74 -52.49 -0.41 1.67 16 27 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 28 H 0.20 2.47 8.06 -52.49 -0.42 2.05 16 29 H 0.12 2.65 7.63 -52.49 -0.40 2.25 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.22 7.96 -52.48 -0.42 1.80 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -30.32 297.77 -8.49 -38.81 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.13 Total: 5.01 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -5.35 Total: -16.67 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.49 Total: -40.75 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.32 -8.49 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070096609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.689 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds