Wall clock time and date at job start Mon Mar 30 2020 08:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00125 * 2 1 4 4 H 1.48501 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47288 * 300.00309 * 3 2 1 6 6 H 1.48501 * 109.47120 * 60.00238 * 3 2 1 7 7 C 1.37873 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99916 * 173.40096 * 7 2 1 9 9 C 1.50697 * 120.00200 * 353.40122 * 7 2 1 10 10 H 1.09000 * 109.47191 * 331.14136 * 9 7 2 11 11 C 1.50707 * 109.46899 * 211.14069 * 9 7 2 12 12 O 1.20815 * 120.00020 * 267.50195 * 11 9 7 13 13 C 1.47913 * 119.99781 * 87.50753 * 11 9 7 14 14 C 1.39736 * 120.56869 * 179.72226 * 13 11 9 15 15 C 1.38793 * 118.23315 * 179.73475 * 14 13 11 16 16 N 1.32177 * 119.15436 * 0.53515 * 15 14 13 17 17 C 1.31911 * 121.08280 * 359.72493 * 16 15 14 18 18 N 1.31538 * 121.94900 * 0.02562 * 17 16 15 19 19 C 1.50691 * 109.47254 * 91.14340 * 9 7 2 20 20 C 1.38238 * 120.00471 * 52.64449 * 19 9 7 21 21 C 1.38239 * 120.00422 * 179.79045 * 20 19 9 22 22 C 1.38230 * 119.99590 * 0.43835 * 21 20 19 23 23 C 1.38231 * 120.00450 * 359.81213 * 22 21 20 24 24 C 1.38236 * 120.00291 * 232.91314 * 19 9 7 25 25 H 0.96998 * 120.00414 * 183.67190 * 1 2 3 26 26 H 1.08002 * 120.88132 * 359.97084 * 14 13 11 27 27 H 1.08003 * 120.41961 * 180.27734 * 15 14 13 28 28 H 1.08001 * 119.02838 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.99854 * 359.97438 * 20 19 9 30 30 H 1.07994 * 120.00086 * 180.27204 * 21 20 19 31 31 H 1.08002 * 119.99882 * 179.83145 * 22 21 20 32 32 H 1.08000 * 120.00559 * 180.02562 * 23 22 21 33 33 H 1.08007 * 119.99448 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0792 -1.1971 -0.1080 9 6 1.2584 -2.4949 0.1489 10 1 0.3510 -2.3287 0.7295 11 6 2.1326 -3.4966 0.8585 12 8 2.8272 -4.2514 0.2201 13 6 2.1400 -3.5558 2.3364 14 6 2.9415 -4.4838 3.0064 15 6 2.9152 -4.4933 4.3941 16 7 2.1316 -3.6390 5.0291 17 6 1.3828 -2.7791 4.3658 18 7 1.3781 -2.7293 3.0514 19 6 0.8928 -3.0237 -1.2140 20 6 1.8673 -3.1675 -2.1839 21 6 1.5327 -3.6567 -3.4328 22 6 0.2220 -3.9935 -3.7147 23 6 -0.7534 -3.8448 -2.7466 24 6 -0.4180 -3.3597 -1.4963 25 1 -0.4851 -0.8383 0.0538 26 1 3.5678 -5.1728 2.4591 27 1 3.5241 -5.1926 4.9478 28 1 0.7545 -2.0961 4.9183 29 1 2.8906 -2.9005 -1.9650 30 1 2.2948 -3.7732 -4.1891 31 1 -0.0399 -4.3731 -4.6913 32 1 -1.7774 -4.1083 -2.9666 33 1 -1.1801 -3.2436 -0.7398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070096609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:19:14 Heat of formation + Delta-G solvation = 20.408418 kcal Electronic energy + Delta-G solvation = -19514.604811 eV Core-core repulsion = 16504.836021 eV Total energy + Delta-G solvation = -3009.768790 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.18902 -40.75464 -39.36203 -35.93885 -34.83884 -33.13440 -32.72480 -31.66366 -29.40012 -26.84126 -25.57915 -25.15796 -23.29768 -22.73519 -21.33681 -19.22934 -18.64373 -18.24536 -17.44558 -16.53794 -16.49790 -16.14384 -16.10807 -15.71029 -15.55444 -15.18451 -15.03301 -14.59477 -14.24894 -14.07043 -13.75681 -13.33086 -12.84493 -12.63091 -12.04521 -11.99161 -11.94988 -11.87398 -11.77305 -11.12771 -10.91203 -10.82311 -10.57106 -10.18796 -9.68605 -9.37200 -8.65069 -6.36349 -0.72474 -0.05471 0.60972 0.66481 1.27962 1.51703 1.59720 1.74548 2.51487 2.62490 2.79728 3.04120 3.14124 3.20671 3.28698 3.77299 3.94670 4.10245 4.20517 4.24754 4.35626 4.41260 4.50247 4.69034 4.72660 4.83128 4.92122 5.23306 5.25940 5.32077 5.66598 5.69606 5.72208 5.78233 6.04353 6.10296 6.28131 6.39015 6.57175 6.98667 7.39882 8.75465 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.008319 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.833996 B = 3365.059644 C = 4652.147646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 1.110 2.890 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.582 4.582 8 H 0.037 0.963 9 C 0.034 3.966 10 H 0.060 0.940 11 C 0.421 3.579 12 O -0.468 6.468 13 C 0.086 3.914 14 C -0.179 4.179 15 C 0.157 3.843 16 N -0.512 5.512 17 C 0.281 3.719 18 N -0.495 5.495 19 C -0.068 4.068 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.148 4.148 25 H 0.265 0.735 26 H 0.169 0.831 27 H 0.223 0.777 28 H 0.223 0.777 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -8.575 3.501 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.207 4.207 3 Si 0.933 3.067 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.619 4.619 8 H 0.055 0.945 9 C 0.014 3.986 10 H 0.078 0.922 11 C 0.298 3.702 12 O -0.341 6.341 13 C -0.059 4.059 14 C -0.201 4.201 15 C -0.011 4.011 16 N -0.226 5.226 17 C -0.007 4.007 18 N -0.212 5.212 19 C -0.069 4.069 20 C -0.123 4.123 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.167 4.167 25 H 0.076 0.924 26 H 0.187 0.813 27 H 0.239 0.761 28 H 0.239 0.761 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.281 -6.713 3.556 7.932 hybrid contribution 0.577 -1.858 -0.295 1.968 sum 2.858 -8.572 3.261 9.606 Atomic orbital electron populations 1.70794 1.07457 1.30858 1.45644 1.26946 0.96511 1.05238 0.92042 0.83007 0.74108 0.71887 0.77693 1.20381 1.20535 1.19995 1.21491 0.93732 0.90516 1.56161 0.94483 1.18248 0.96711 0.93366 0.90255 0.92241 1.23042 0.79975 0.80116 0.87040 1.90271 1.37189 1.38171 1.68503 1.22336 0.94044 0.92929 0.96555 1.23397 0.99445 0.99399 0.97903 1.24040 0.92533 0.94009 0.90497 1.68449 1.06734 1.05347 1.42115 1.25578 0.94167 0.94410 0.86537 1.68525 1.20468 1.22098 1.10098 1.20431 0.93894 0.95068 0.97503 1.20910 0.98646 0.99008 0.93781 1.21396 0.97726 0.99731 0.96220 1.21350 0.92541 1.01369 1.00158 1.21334 1.00498 0.99760 0.92822 1.21185 0.95538 1.01522 0.98421 0.92406 0.81303 0.76092 0.76068 0.88477 0.84270 0.83082 0.83857 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.22 13.62 21.45 0.29 -52.93 16 2 C -0.01 -0.29 5.45 84.65 0.46 0.17 16 3 Si 1.11 49.95 29.91 68.60 2.05 52.00 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.58 -31.98 7.60 25.60 0.19 -31.78 16 8 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 9 C 0.03 1.70 1.71 -13.03 -0.02 1.68 16 10 H 0.06 3.20 6.02 -2.39 -0.01 3.19 16 11 C 0.42 19.33 6.20 28.25 0.18 19.50 16 12 O -0.47 -21.72 15.23 -1.61 -0.02 -21.74 16 13 C 0.09 3.37 6.77 41.86 0.28 3.66 16 14 C -0.18 -5.26 9.72 22.77 0.22 -5.04 16 15 C 0.16 3.61 11.31 84.77 0.96 4.57 16 16 N -0.51 -13.86 10.42 -200.09 -2.08 -15.94 16 17 C 0.28 8.68 12.27 180.93 2.22 10.90 16 18 N -0.50 -19.56 9.66 -189.42 -1.83 -21.39 16 19 C -0.07 -3.28 4.58 -19.87 -0.09 -3.37 16 20 C -0.11 -4.78 8.05 22.27 0.18 -4.60 16 21 C -0.13 -4.91 10.05 22.27 0.22 -4.69 16 22 C -0.14 -4.50 10.05 22.27 0.22 -4.27 16 23 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 24 C -0.15 -6.41 9.67 22.27 0.22 -6.19 16 25 H 0.26 15.56 6.67 -92.71 -0.62 14.94 16 26 H 0.17 4.31 7.74 -2.91 -0.02 4.29 16 27 H 0.22 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.22 5.39 8.06 -2.91 -0.02 5.36 16 29 H 0.10 4.66 7.63 -2.91 -0.02 4.63 16 30 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.11 4.55 7.96 -2.91 -0.02 4.53 16 Total: -1.00 -69.24 297.77 5.15 -64.09 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.28 Total: 19.63 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 5.47 Total: -23.72 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.62 Total: -90.26 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.02 Total: -21.74 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -69.24 5.15 -64.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070096609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.502 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds