Wall clock time and date at job start Mon Mar 30 2020 08:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86804 * 119.99497 * 2 1 4 4 H 1.48505 * 109.46868 * 239.99537 * 3 2 1 5 5 H 1.48493 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46937 * 119.99920 * 3 2 1 7 7 C 1.40133 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 179.97438 * 7 2 1 9 9 C 1.41793 * 119.99779 * 0.02562 * 7 2 1 10 10 O 1.21765 * 120.00096 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99962 * 179.97438 * 9 7 2 12 12 C 1.39235 * 119.99905 * 185.27633 * 11 9 7 13 13 C 1.39227 * 119.96157 * 33.59000 * 12 11 9 14 14 C 1.37732 * 120.04101 * 179.97438 * 13 12 11 15 15 C 1.39544 * 119.95860 * 359.97438 * 14 13 12 16 16 C 1.48209 * 120.03723 * 179.97438 * 15 14 13 17 17 C 1.39431 * 119.73374 * 179.97438 * 16 15 14 18 18 C 1.38367 * 119.06295 * 180.02562 * 17 16 15 19 19 C 1.38814 * 118.51925 * 0.02562 * 18 17 16 20 20 C 1.38274 * 119.37798 * 0.24763 * 19 18 17 21 21 N 1.31755 * 120.89897 * 359.49907 * 20 19 18 22 22 C 1.39546 * 119.92325 * 0.27709 * 15 14 13 23 23 C 1.37735 * 119.95828 * 359.46825 * 22 15 14 24 24 H 0.96996 * 120.00605 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00122 * 5.28329 * 11 9 7 26 26 H 1.08000 * 119.97469 * 359.96936 * 13 12 11 27 27 H 1.07994 * 120.01848 * 180.02562 * 14 13 12 28 28 H 1.07997 * 120.47333 * 359.97438 * 17 16 15 29 29 H 1.08008 * 120.74381 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.31321 * 179.97438 * 19 18 17 31 31 H 1.07995 * 119.55055 * 179.74563 * 20 19 18 32 32 H 1.08001 * 120.01641 * 179.72559 * 22 15 14 33 33 H 1.08006 * 119.97661 * 180.25712 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0939 1.6966 1.2125 7 6 2.0071 -1.2135 0.0005 8 1 3.0871 -1.2134 0.0001 9 6 1.2982 -2.4415 0.0005 10 8 0.0806 -2.4416 -0.0004 11 7 1.9722 -3.6087 0.0005 12 6 1.2805 -4.8120 -0.1103 13 6 0.1199 -4.8788 -0.8764 14 6 -0.5654 -6.0684 -0.9877 15 6 -0.0954 -7.2072 -0.3324 16 6 -0.8317 -8.4880 -0.4504 17 6 -0.3561 -9.6222 0.2065 18 6 -1.0541 -10.8108 0.0864 19 6 -2.2061 -10.8276 -0.6880 20 6 -2.6177 -9.6669 -1.3167 21 7 -1.9373 -8.5467 -1.1821 22 6 1.0652 -7.1372 0.4393 23 6 1.7508 -5.9472 0.5440 24 1 -0.4851 0.8400 -0.0004 25 1 2.9391 -3.6105 0.0779 26 1 -0.2434 -3.9972 -1.3837 27 1 -1.4654 -6.1199 -1.5823 28 1 0.5448 -9.5739 0.8002 29 1 -0.7103 -11.7057 0.5840 30 1 -2.7731 -11.7397 -0.8019 31 1 -3.5112 -9.6778 -1.9232 32 1 1.4279 -8.0166 0.9507 33 1 2.6513 -5.8937 1.1378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:58 Heat of formation + Delta-G solvation = 0.609052 kcal Electronic energy + Delta-G solvation = -18527.754084 eV Core-core repulsion = 15517.126729 eV Total energy + Delta-G solvation = -3010.627355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29543 -40.53431 -38.71535 -35.55452 -34.56105 -33.44216 -32.79832 -31.74187 -29.91299 -28.23159 -24.93813 -24.73963 -23.17773 -22.61195 -21.47467 -19.46558 -18.51456 -17.76107 -17.59185 -17.14231 -16.76809 -15.98223 -15.57252 -15.35076 -15.07076 -15.01245 -14.68948 -14.47875 -14.18108 -13.82018 -13.50020 -13.28006 -12.91824 -12.76180 -12.73089 -12.47981 -12.08432 -12.01232 -11.26913 -10.94338 -10.75543 -10.32098 -10.05719 -9.94085 -9.72631 -8.51729 -8.40089 -7.04157 -0.29542 0.42098 0.56504 0.90895 1.38908 1.41981 1.54777 2.20033 2.34382 2.74922 2.96749 3.21629 3.30603 3.63494 3.79203 4.05680 4.09319 4.14074 4.25400 4.30695 4.52999 4.66871 4.71875 4.78965 4.92406 5.11516 5.19465 5.22045 5.30745 5.44417 5.53160 5.67232 5.84374 5.88375 5.90413 6.16747 6.40775 6.71516 7.13074 7.37876 8.36611 8.54900 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.003509 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.841806 B = 7977.493188 C = 8396.000537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.030 3.970 3 Si 1.004 2.996 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.527 3.473 10 O -0.614 6.614 11 N -0.694 5.694 12 C 0.177 3.823 13 C -0.164 4.164 14 C -0.068 4.068 15 C -0.106 4.106 16 C 0.155 3.845 17 C -0.171 4.171 18 C -0.070 4.070 19 C -0.177 4.177 20 C 0.085 3.915 21 N -0.525 5.525 22 C -0.063 4.063 23 C -0.169 4.169 24 H 0.279 0.721 25 H 0.408 0.592 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -19.547 1.033 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.600 4.600 8 H 0.112 0.888 9 C 0.336 3.664 10 O -0.501 6.501 11 N -0.337 5.337 12 C 0.078 3.922 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.108 4.108 16 C 0.020 3.980 17 C -0.191 4.191 18 C -0.096 4.096 19 C -0.197 4.197 20 C -0.073 4.073 21 N -0.234 5.234 22 C -0.082 4.082 23 C -0.190 4.190 24 H 0.089 0.911 25 H 0.244 0.756 26 H 0.112 0.888 27 H 0.137 0.863 28 H 0.177 0.823 29 H 0.190 0.810 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.681 -18.602 0.600 18.688 hybrid contribution 0.494 0.532 0.131 0.737 sum 2.175 -18.071 0.730 18.216 Atomic orbital electron populations 1.70169 1.09807 1.29616 1.33470 1.27085 0.95503 1.05331 0.90934 0.84977 0.78192 0.74088 0.80517 1.17686 1.19820 1.17455 1.20594 0.95647 0.90507 1.53210 0.88827 1.17475 0.87309 0.83862 0.77719 1.90631 1.15648 1.87145 1.56708 1.43738 1.10262 1.04033 1.75703 1.18387 0.93352 0.87261 0.93208 1.21064 0.98255 0.97683 1.01575 1.21036 0.98446 0.91301 0.97929 1.18613 0.97515 0.91708 1.03005 1.19874 0.91404 0.93004 0.93673 1.22372 1.02714 0.92720 1.01284 1.21995 0.93565 0.98370 0.95650 1.22555 0.98298 1.00382 0.98427 1.23202 0.98836 0.87933 0.97296 1.67591 1.07499 1.30571 1.17785 1.21246 0.92596 0.98072 0.96309 1.21097 1.03780 0.91787 1.02297 0.91067 0.75560 0.88835 0.86315 0.82261 0.81038 0.81459 0.81040 0.81481 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.49 11.73 21.85 0.26 -48.24 16 2 C 0.03 1.62 5.50 85.33 0.47 2.09 16 3 Si 1.00 39.71 29.56 68.60 2.03 41.74 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.56 -31.40 9.31 23.61 0.22 -31.18 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.53 30.74 7.30 85.12 0.62 31.36 16 10 O -0.61 -41.35 12.55 -4.56 -0.06 -41.41 16 11 N -0.69 -32.33 5.30 -311.35 -1.65 -33.98 16 12 C 0.18 7.75 6.27 38.44 0.24 7.99 16 13 C -0.16 -7.91 8.63 22.39 0.19 -7.72 16 14 C -0.07 -2.82 9.56 22.47 0.21 -2.60 16 15 C -0.11 -3.65 5.88 -20.00 -0.12 -3.77 16 16 C 0.16 4.62 6.73 41.95 0.28 4.90 16 17 C -0.17 -3.55 9.46 22.59 0.21 -3.33 16 18 C -0.07 -1.07 10.16 22.44 0.23 -0.84 16 19 C -0.18 -2.78 10.11 22.42 0.23 -2.55 16 20 C 0.09 1.88 11.18 84.71 0.95 2.83 16 21 N -0.52 -16.23 9.43 -184.86 -1.74 -17.97 16 22 C -0.06 -1.82 9.41 22.47 0.21 -1.61 16 23 C -0.17 -5.56 9.95 22.38 0.22 -5.34 16 24 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 25 H 0.41 15.67 8.77 -92.71 -0.81 14.85 16 26 H 0.09 5.30 6.41 -2.91 -0.02 5.29 16 27 H 0.12 4.96 7.53 -2.91 -0.02 4.93 16 28 H 0.16 2.37 6.18 -2.91 -0.02 2.35 16 29 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.17 3.16 6.17 -2.91 -0.02 3.14 16 33 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -81.09 292.78 3.35 -77.74 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.35 Total: 31.89 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.17 Total: -9.77 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.14 Total: -100.19 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.06 Total: -41.41 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -81.09 3.35 -77.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.345 kcal (2) G-P(sol) polarization free energy of solvation -81.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds