Wall clock time and date at job start Mon Mar 30 2020 08:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86801 * 119.99536 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99290 * 3 2 1 5 5 H 1.48495 * 109.47609 * 29.99613 * 3 2 1 6 6 H 1.48506 * 109.47123 * 149.99903 * 3 2 1 7 7 C 1.40115 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 180.02562 * 7 2 1 9 9 C 1.46163 * 120.00012 * 0.02562 * 7 2 1 10 10 O 1.21741 * 120.00315 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00165 * 179.97438 * 9 7 2 12 12 C 1.39547 * 119.99854 * 185.27204 * 11 9 7 13 13 C 1.39129 * 120.01789 * 213.31893 * 12 11 9 14 14 C 1.38134 * 120.16317 * 180.02562 * 13 12 11 15 15 C 1.38131 * 120.20758 * 0.02562 * 14 13 12 16 16 C 1.39424 * 120.04285 * 0.02562 * 15 14 13 17 17 C 1.48354 * 120.08126 * 179.97438 * 16 15 14 18 18 C 1.39333 * 119.72660 * 4.99565 * 17 16 15 19 19 C 1.38396 * 119.06816 * 179.97438 * 18 17 16 20 20 C 1.38792 * 118.51248 * 359.97438 * 19 18 17 21 21 C 1.38251 * 119.36034 * 0.25780 * 20 19 18 22 22 N 1.31759 * 120.89742 * 359.46767 * 21 20 19 23 23 C 1.38794 * 120.02532 * 33.64375 * 12 11 9 24 24 H 0.96997 * 120.00724 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99838 * 5.27258 * 11 9 7 26 26 H 1.08003 * 119.92460 * 359.97438 * 13 12 11 27 27 H 1.07996 * 119.89240 * 179.97438 * 14 13 12 28 28 H 1.08001 * 119.97508 * 180.02562 * 15 14 13 29 29 H 1.08002 * 120.46955 * 359.95482 * 18 17 16 30 30 H 1.08000 * 120.74832 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.31599 * 179.97438 * 20 19 18 32 32 H 1.08005 * 119.54673 * 179.75253 * 21 20 19 33 33 H 1.08005 * 120.10286 * 359.96841 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4376 2.6528 0.6999 6 1 3.5378 1.4404 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2762 -2.4793 0.0005 10 8 0.0588 -2.4794 0.0005 11 7 1.9502 -3.6465 0.0005 12 6 1.2569 -4.8524 -0.1105 13 6 1.7284 -5.9887 0.5393 14 6 1.0448 -7.1842 0.4310 15 6 -0.1101 -7.2585 -0.3232 16 6 -0.5897 -6.1254 -0.9788 17 6 -1.8297 -6.2044 -1.7895 18 6 -2.5686 -7.3855 -1.8085 19 6 -3.7234 -7.4439 -2.5690 20 6 -4.1022 -6.3176 -3.2861 21 6 -3.3188 -5.1801 -3.2252 22 7 -2.2265 -5.1495 -2.4890 23 6 0.1003 -4.9208 -0.8747 24 1 -0.4851 0.8400 -0.0004 25 1 2.9172 -3.6482 0.0777 26 1 2.6316 -5.9363 1.1292 27 1 1.4150 -8.0636 0.9369 28 1 -0.6418 -8.1950 -0.4049 29 1 -2.2446 -8.2434 -1.2381 30 1 -4.3171 -8.3455 -2.6031 31 1 -4.9979 -6.3312 -3.8894 32 1 -3.6086 -4.3032 -3.7852 33 1 -0.2652 -4.0413 -1.3840 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:22:01 Heat of formation + Delta-G solvation = 24.086614 kcal Electronic energy + Delta-G solvation = -18899.804523 eV Core-core repulsion = 15890.195231 eV Total energy + Delta-G solvation = -3009.609291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09834 -38.87950 -36.86069 -33.64548 -32.60937 -32.38048 -31.79060 -29.43787 -28.59058 -26.19698 -23.83358 -23.56369 -21.84804 -20.99435 -19.61227 -17.60995 -17.11564 -16.09612 -15.93635 -15.60599 -15.41181 -14.73517 -14.29921 -13.98653 -13.70730 -13.58587 -13.05671 -12.89656 -12.56748 -12.45782 -11.87407 -11.69588 -11.34773 -11.08653 -11.05810 -10.74248 -10.55305 -10.31372 -9.86328 -9.54514 -9.16326 -9.12919 -8.83513 -7.95780 -7.65328 -7.05933 -6.30005 -4.77717 0.87166 1.42718 2.06504 2.19094 3.09903 3.16577 3.19926 3.93592 4.02413 4.38834 4.42863 4.59953 4.66248 4.86043 4.95920 5.14249 5.23060 5.38525 5.55687 5.63365 5.69742 5.79374 5.92221 6.06763 6.21364 6.21801 6.31559 6.58655 6.78899 6.91159 7.06800 7.18029 7.31624 7.43456 7.77778 8.09628 8.20778 8.26636 8.89106 9.26050 10.43690 10.61632 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.005157 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.637216 B = 5428.034361 C = 6641.663592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.541 3.459 10 O -0.554 6.554 11 N -0.700 5.700 12 C 0.185 3.815 13 C -0.165 4.165 14 C -0.105 4.105 15 C -0.146 4.146 16 C -0.045 4.045 17 C 0.185 3.815 18 C -0.171 4.171 19 C -0.077 4.077 20 C -0.188 4.188 21 C 0.107 3.893 22 N -0.467 5.467 23 C -0.084 4.084 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -13.175 -3.693 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.347 3.653 10 O -0.435 6.435 11 N -0.344 5.344 12 C 0.086 3.914 13 C -0.187 4.187 14 C -0.124 4.124 15 C -0.167 4.167 16 C -0.047 4.047 17 C 0.049 3.951 18 C -0.190 4.190 19 C -0.103 4.103 20 C -0.208 4.208 21 C -0.051 4.051 22 N -0.175 5.175 23 C -0.105 4.105 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.059 -12.151 -3.678 13.059 hybrid contribution 0.340 0.028 0.080 0.351 sum -2.719 -12.123 -3.598 12.935 Atomic orbital electron populations 1.69989 1.07133 1.27728 1.33737 1.25731 0.94674 1.00458 0.92580 0.86300 0.80105 0.81013 0.78970 1.19581 1.20333 1.18801 1.20839 0.93765 0.89011 1.53867 0.91037 1.18415 0.87566 0.82100 0.77199 1.90672 1.13553 1.85948 1.53314 1.44189 1.09610 1.04308 1.76251 1.17947 0.93587 0.86755 0.93063 1.21011 1.02456 0.93194 1.02017 1.20625 0.95349 0.97044 0.99385 1.20873 0.97855 0.97165 1.00774 1.18339 0.93528 0.94231 0.98602 1.19928 0.93507 0.88772 0.92907 1.22078 0.96365 0.99219 1.01370 1.21458 0.95665 0.98382 0.94805 1.22132 1.01760 0.94788 1.02145 1.22802 0.90002 0.97496 0.94839 1.67787 1.15074 1.28703 1.05945 1.21555 0.94479 0.97843 0.96662 0.91765 0.77356 0.86384 0.86359 0.86618 0.84655 0.85072 0.85098 0.82740 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.40 11.82 55.55 0.66 -21.74 16 2 C 0.09 2.38 5.50 -17.36 -0.10 2.28 16 3 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.54 -14.91 9.53 -35.70 -0.34 -15.25 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.54 15.30 7.47 -13.08 -0.10 15.20 16 10 O -0.55 -17.72 12.71 5.15 0.07 -17.65 16 11 N -0.70 -16.08 5.32 -11.23 -0.06 -16.14 16 12 C 0.19 4.00 6.27 -83.81 -0.53 3.47 16 13 C -0.16 -2.86 9.96 -39.29 -0.39 -3.25 16 14 C -0.11 -1.60 10.03 -39.66 -0.40 -2.00 16 15 C -0.15 -2.31 9.41 -39.18 -0.37 -2.68 16 16 C -0.05 -0.88 5.87 -104.93 -0.62 -1.49 16 17 C 0.18 3.34 6.72 -82.94 -0.56 2.78 16 18 C -0.17 -2.37 9.45 -39.12 -0.37 -2.73 16 19 C -0.08 -0.90 10.17 -39.32 -0.40 -1.30 16 20 C -0.19 -2.26 10.11 -39.37 -0.40 -2.66 16 21 C 0.11 1.62 11.17 -17.58 -0.20 1.42 16 22 N -0.47 -9.05 9.44 -9.78 -0.09 -9.14 16 23 C -0.08 -1.92 8.17 -39.01 -0.32 -2.24 16 24 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 25 H 0.39 7.64 8.79 -40.82 -0.36 7.28 16 26 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.43 6.20 -52.49 -0.33 1.11 16 29 H 0.14 1.51 6.22 -52.49 -0.33 1.19 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.15 4.11 5.91 -52.48 -0.31 3.80 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -34.98 293.57 -8.08 -43.07 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -2.98 Total: 10.90 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -5.07 Total: -8.45 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.50 Total: -47.02 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.07 Total: -17.65 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.98 -8.08 -43.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.155 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds