Wall clock time and date at job start Mon Mar 30 2020 08:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86801 * 119.99536 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99290 * 3 2 1 5 5 H 1.48495 * 109.47609 * 29.99613 * 3 2 1 6 6 H 1.48506 * 109.47123 * 149.99903 * 3 2 1 7 7 C 1.40115 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 180.02562 * 7 2 1 9 9 C 1.46163 * 120.00012 * 0.02562 * 7 2 1 10 10 O 1.21741 * 120.00315 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00165 * 179.97438 * 9 7 2 12 12 C 1.39547 * 119.99854 * 185.27204 * 11 9 7 13 13 C 1.39129 * 120.01789 * 213.31893 * 12 11 9 14 14 C 1.38134 * 120.16317 * 180.02562 * 13 12 11 15 15 C 1.38131 * 120.20758 * 0.02562 * 14 13 12 16 16 C 1.39424 * 120.04285 * 0.02562 * 15 14 13 17 17 C 1.48354 * 120.08126 * 179.97438 * 16 15 14 18 18 C 1.39333 * 119.72660 * 4.99565 * 17 16 15 19 19 C 1.38396 * 119.06816 * 179.97438 * 18 17 16 20 20 C 1.38792 * 118.51248 * 359.97438 * 19 18 17 21 21 C 1.38251 * 119.36034 * 0.25780 * 20 19 18 22 22 N 1.31759 * 120.89742 * 359.46767 * 21 20 19 23 23 C 1.38794 * 120.02532 * 33.64375 * 12 11 9 24 24 H 0.96997 * 120.00724 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99838 * 5.27258 * 11 9 7 26 26 H 1.08003 * 119.92460 * 359.97438 * 13 12 11 27 27 H 1.07996 * 119.89240 * 179.97438 * 14 13 12 28 28 H 1.08001 * 119.97508 * 180.02562 * 15 14 13 29 29 H 1.08002 * 120.46955 * 359.95482 * 18 17 16 30 30 H 1.08000 * 120.74832 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.31599 * 179.97438 * 20 19 18 32 32 H 1.08005 * 119.54673 * 179.75253 * 21 20 19 33 33 H 1.08005 * 120.10286 * 359.96841 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4376 2.6528 0.6999 6 1 3.5378 1.4404 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2762 -2.4793 0.0005 10 8 0.0588 -2.4794 0.0005 11 7 1.9502 -3.6465 0.0005 12 6 1.2569 -4.8524 -0.1105 13 6 1.7284 -5.9887 0.5393 14 6 1.0448 -7.1842 0.4310 15 6 -0.1101 -7.2585 -0.3232 16 6 -0.5897 -6.1254 -0.9788 17 6 -1.8297 -6.2044 -1.7895 18 6 -2.5686 -7.3855 -1.8085 19 6 -3.7234 -7.4439 -2.5690 20 6 -4.1022 -6.3176 -3.2861 21 6 -3.3188 -5.1801 -3.2252 22 7 -2.2265 -5.1495 -2.4890 23 6 0.1003 -4.9208 -0.8747 24 1 -0.4851 0.8400 -0.0004 25 1 2.9172 -3.6482 0.0777 26 1 2.6316 -5.9363 1.1292 27 1 1.4150 -8.0636 0.9369 28 1 -0.6418 -8.1950 -0.4049 29 1 -2.2446 -8.2434 -1.2381 30 1 -4.3171 -8.3455 -2.6031 31 1 -4.9979 -6.3312 -3.8894 32 1 -3.6086 -4.3032 -3.7852 33 1 -0.2652 -4.0413 -1.3840 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:22:01 Heat of formation + Delta-G solvation = -0.887787 kcal Electronic energy + Delta-G solvation = -18900.887494 eV Core-core repulsion = 15890.195231 eV Total energy + Delta-G solvation = -3010.692263 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33558 -40.44567 -38.63482 -35.44484 -34.58252 -33.62048 -33.10937 -30.92942 -30.02350 -28.20173 -25.08733 -24.77454 -23.42098 -22.34359 -21.36359 -19.45433 -18.53109 -17.60453 -17.33498 -17.10124 -16.83854 -16.06478 -16.00760 -15.55439 -15.04675 -14.90023 -14.55636 -14.48615 -14.10113 -13.86101 -13.45760 -13.21810 -12.84870 -12.79939 -12.70479 -12.38645 -12.10406 -12.03961 -11.21182 -10.95787 -10.81729 -10.43723 -10.31659 -9.91123 -9.20192 -8.72830 -8.37102 -6.96153 -0.33235 0.37815 0.61076 0.91723 1.37240 1.39727 1.55112 2.19820 2.36803 2.75252 2.93824 3.20451 3.29152 3.58580 3.76480 4.01286 4.14333 4.21149 4.22956 4.34939 4.41515 4.67199 4.73861 4.79753 4.91261 5.07171 5.21455 5.23377 5.25392 5.51499 5.56313 5.69354 5.79630 5.83274 5.96499 6.16744 6.42650 6.76333 7.13897 7.35092 8.36473 8.56958 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.005157 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.637216 B = 5428.034361 C = 6641.663592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.526 3.474 10 O -0.605 6.605 11 N -0.695 5.695 12 C 0.146 3.854 13 C -0.158 4.158 14 C -0.090 4.090 15 C -0.131 4.131 16 C -0.056 4.056 17 C 0.139 3.861 18 C -0.161 4.161 19 C -0.070 4.070 20 C -0.169 4.169 21 C 0.076 3.924 22 N -0.530 5.530 23 C -0.127 4.127 24 H 0.277 0.723 25 H 0.407 0.593 26 H 0.147 0.853 27 H 0.172 0.828 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -16.393 -3.217 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.168 1.168 7 C -0.603 4.603 8 H 0.112 0.888 9 C 0.332 3.668 10 O -0.490 6.490 11 N -0.339 5.339 12 C 0.049 3.951 13 C -0.179 4.179 14 C -0.108 4.108 15 C -0.151 4.151 16 C -0.057 4.057 17 C 0.004 3.996 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.189 4.189 21 C -0.082 4.082 22 N -0.239 5.239 23 C -0.149 4.149 24 H 0.087 0.913 25 H 0.243 0.757 26 H 0.164 0.836 27 H 0.190 0.810 28 H 0.180 0.820 29 H 0.186 0.814 30 H 0.199 0.801 31 H 0.190 0.810 32 H 0.178 0.822 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.717 -15.436 -3.205 15.997 hybrid contribution 0.114 0.814 -0.144 0.835 sum -2.603 -14.621 -3.349 15.224 Atomic orbital electron populations 1.70180 1.09752 1.29280 1.35308 1.27068 0.95535 1.05181 0.91045 0.84933 0.78816 0.74534 0.79489 1.18628 1.19644 1.16772 1.21416 0.95001 0.89578 1.54282 0.88804 1.18816 0.87249 0.83995 0.76731 1.90630 1.15730 1.87201 1.55472 1.43688 1.10135 1.03963 1.76161 1.18268 0.94174 0.87465 0.95227 1.21345 1.03266 0.92299 1.01009 1.21255 0.94120 0.97610 0.97859 1.21406 0.97789 0.97354 0.98546 1.18739 0.93990 0.93995 0.99003 1.20127 0.94499 0.90467 0.94509 1.22414 0.96241 0.98180 1.01200 1.22058 0.94891 0.99715 0.92862 1.22570 1.01768 0.93400 1.01134 1.23142 0.90107 0.99605 0.95322 1.67639 1.17473 1.30923 1.07883 1.21228 0.96751 0.97827 0.99127 0.91348 0.75704 0.83566 0.81018 0.82002 0.81361 0.80112 0.81039 0.82221 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.38 11.82 21.85 0.26 -51.12 16 2 C 0.03 1.57 5.50 85.33 0.47 2.04 16 3 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.24 -9.27 7.11 99.48 0.71 -8.57 16 7 C -0.57 -32.92 9.53 24.79 0.24 -32.68 16 8 H 0.09 4.81 7.85 -2.91 -0.02 4.78 16 9 C 0.53 32.07 7.47 86.30 0.64 32.71 16 10 O -0.61 -42.49 12.71 -4.48 -0.06 -42.55 16 11 N -0.69 -34.04 5.32 -307.62 -1.64 -35.68 16 12 C 0.15 6.63 6.27 38.26 0.24 6.87 16 13 C -0.16 -5.28 9.96 22.46 0.22 -5.06 16 14 C -0.09 -2.40 10.03 22.22 0.22 -2.17 16 15 C -0.13 -3.78 9.41 22.53 0.21 -3.57 16 16 C -0.06 -2.22 5.87 -20.06 -0.12 -2.34 16 17 C 0.14 5.18 6.72 41.98 0.28 5.46 16 18 C -0.16 -4.04 9.45 22.57 0.21 -3.83 16 19 C -0.07 -1.36 10.17 22.44 0.23 -1.13 16 20 C -0.17 -3.69 10.11 22.41 0.23 -3.46 16 21 C 0.08 2.41 11.17 84.71 0.95 3.36 16 22 N -0.53 -22.30 9.44 -184.84 -1.74 -24.05 16 23 C -0.13 -6.36 8.17 22.64 0.18 -6.18 16 24 H 0.28 15.74 8.29 -92.71 -0.77 14.97 16 25 H 0.41 16.60 8.79 -92.70 -0.82 15.79 16 26 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.16 3.10 6.20 -2.91 -0.02 3.08 16 29 H 0.17 2.91 6.22 -2.91 -0.02 2.89 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.09 5.75 5.91 -2.91 -0.02 5.73 16 Total: -1.00 -89.17 293.57 3.40 -85.77 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.34 Total: 34.07 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.21 Total: -9.99 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -3.12 Total: -110.85 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.06 Total: -42.55 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -89.17 3.40 -85.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.878 kcal (2) G-P(sol) polarization free energy of solvation -89.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds