Wall clock time and date at job start Mon Mar 30 2020 08:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48493 * 109.47268 * 269.99829 * 3 2 1 5 5 H 1.48505 * 109.46913 * 30.00157 * 3 2 1 6 6 H 1.48501 * 109.46926 * 149.99689 * 3 2 1 7 7 C 1.40127 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.46160 * 119.99974 * 0.02562 * 7 2 1 10 10 O 1.21754 * 119.99928 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00394 * 179.97438 * 9 7 2 12 12 C 1.39542 * 120.00282 * 184.59671 * 11 9 7 13 13 C 1.39138 * 120.02096 * 324.85042 * 12 11 9 14 14 C 1.38129 * 120.15423 * 180.02562 * 13 12 11 15 15 C 1.38128 * 120.20833 * 359.75171 * 14 13 12 16 16 C 1.39416 * 120.04472 * 0.50193 * 15 14 13 17 17 C 1.48395 * 120.08143 * 179.76819 * 16 15 14 18 18 C 1.39762 * 120.53692 * 359.72864 * 17 16 15 19 19 C 1.38416 * 118.31760 * 179.97438 * 18 17 16 20 20 C 1.38312 * 119.27773 * 0.27728 * 19 18 17 21 21 N 1.31889 * 121.03000 * 359.42297 * 20 19 18 22 22 C 1.31743 * 121.84932 * 0.59116 * 21 20 19 23 23 C 1.38796 * 120.02297 * 144.87465 * 12 11 9 24 24 H 0.96997 * 119.99671 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99554 * 4.60007 * 11 9 7 26 26 H 1.07996 * 119.92399 * 0.04759 * 13 12 11 27 27 H 1.07996 * 119.89413 * 180.02562 * 14 13 12 28 28 H 1.07997 * 119.97983 * 180.27481 * 15 14 13 29 29 H 1.08010 * 120.84465 * 359.97438 * 18 17 16 30 30 H 1.07991 * 120.36027 * 180.02562 * 19 18 17 31 31 H 1.08006 * 119.48718 * 179.69609 * 20 19 18 32 32 H 1.08003 * 119.70491 * 179.72205 * 22 21 20 33 33 H 1.08006 * 120.09982 * 359.96013 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0463 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4400 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2762 -2.4793 0.0005 10 8 0.0587 -2.4793 -0.0004 11 7 1.9500 -3.6466 0.0005 12 6 1.2556 -4.8531 -0.0963 13 6 0.0094 -4.9894 0.5072 14 6 -0.6801 -6.1826 0.4136 15 6 -0.1390 -7.2451 -0.2838 16 6 1.1114 -7.1196 -0.8873 17 6 1.6958 -8.2622 -1.6323 18 6 1.0048 -9.4729 -1.7319 19 6 1.5924 -10.5082 -2.4382 20 6 2.8357 -10.3150 -3.0125 21 7 3.4614 -9.1588 -2.9064 22 6 2.9417 -8.1453 -2.2443 23 6 1.8078 -5.9181 -0.7943 24 1 -0.4849 0.8400 -0.0004 25 1 2.9176 -3.6479 0.0679 26 1 -0.4200 -4.1603 1.0499 27 1 -1.6473 -6.2837 0.8833 28 1 -0.6833 -8.1749 -0.3584 29 1 0.0367 -9.5977 -1.2694 30 1 1.0875 -11.4577 -2.5362 31 1 3.2996 -11.1221 -3.5602 32 1 3.4864 -7.2152 -2.1755 33 1 2.7750 -5.8147 -1.2639 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:08 Heat of formation + Delta-G solvation = -0.734072 kcal Electronic energy + Delta-G solvation = -18594.822109 eV Core-core repulsion = 15584.136512 eV Total energy + Delta-G solvation = -3010.685597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.36470 -40.49623 -38.71157 -35.51528 -34.56584 -33.91890 -33.00504 -30.83242 -29.91252 -28.21371 -25.07780 -24.90648 -23.18733 -22.67410 -21.18832 -19.46652 -18.63577 -17.69297 -17.62528 -17.08676 -16.83287 -16.06812 -15.85916 -15.54978 -14.96096 -14.77162 -14.63704 -14.45768 -14.42696 -13.92433 -13.58874 -13.21365 -12.87245 -12.79928 -12.72388 -12.33209 -12.22429 -12.04063 -11.35617 -10.99432 -10.73921 -10.40459 -10.39142 -9.87505 -9.25204 -8.74244 -8.38030 -6.96206 -0.35373 0.33049 0.50270 0.95897 1.39307 1.40426 1.56158 2.20062 2.35853 2.74786 2.89227 3.13752 3.44690 3.55585 3.70549 3.89166 3.99496 4.05407 4.19000 4.33016 4.46020 4.57856 4.64576 4.80684 4.87765 5.03919 5.13583 5.23824 5.24298 5.51645 5.55036 5.65122 5.74448 5.80462 5.91736 6.14593 6.38433 6.76568 7.02397 7.31668 8.33421 8.55243 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035110 B = 0.003848 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.308523 B = 7274.837460 C = 7934.485906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.605 6.605 11 N -0.695 5.695 12 C 0.159 3.841 13 C -0.154 4.154 14 C -0.099 4.099 15 C -0.136 4.136 16 C -0.031 4.031 17 C -0.098 4.098 18 C -0.072 4.072 19 C -0.160 4.160 20 C 0.082 3.918 21 N -0.509 5.509 22 C 0.089 3.911 23 C -0.158 4.158 24 H 0.278 0.722 25 H 0.407 0.593 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.183 0.817 32 H 0.156 0.844 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 -18.124 -2.730 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.602 4.602 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.491 6.491 11 N -0.339 5.339 12 C 0.062 3.938 13 C -0.175 4.175 14 C -0.118 4.118 15 C -0.155 4.155 16 C -0.033 4.033 17 C -0.100 4.100 18 C -0.098 4.098 19 C -0.179 4.179 20 C -0.074 4.074 21 N -0.218 5.218 22 C -0.068 4.068 23 C -0.179 4.179 24 H 0.088 0.912 25 H 0.242 0.758 26 H 0.120 0.880 27 H 0.160 0.840 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.200 0.800 32 H 0.173 0.827 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.643 -17.842 -3.133 18.477 hybrid contribution -0.232 1.149 0.542 1.291 sum 3.411 -16.693 -2.591 17.233 Atomic orbital electron populations 1.70145 1.09548 1.29377 1.35102 1.27008 0.95577 1.04999 0.91081 0.84955 0.78781 0.74739 0.79477 1.18618 1.19663 1.17100 1.21404 0.95022 0.89590 1.54183 0.88948 1.18741 0.87233 0.83765 0.76667 1.90579 1.15532 1.87110 1.55880 1.43674 1.10197 1.03827 1.76202 1.18107 0.93809 0.86675 0.95232 1.21462 0.96309 0.98330 1.01425 1.21170 1.00031 0.91756 0.98815 1.21332 0.95090 0.99768 0.99320 1.18482 0.94737 0.91988 0.98044 1.19803 0.96191 0.94460 0.99553 1.22050 1.00453 0.91202 0.96063 1.22475 0.96602 1.01074 0.97783 1.23408 0.92838 0.94632 0.96546 1.67673 1.36500 1.01286 1.16347 1.23007 0.92800 0.97819 0.93133 1.21065 1.02328 0.92950 1.01546 0.91217 0.75793 0.88028 0.83954 0.82537 0.82187 0.80897 0.79996 0.82718 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.64 11.82 21.85 0.26 -48.38 16 2 C 0.03 1.62 5.50 85.33 0.47 2.09 16 3 Si 1.00 39.91 29.56 68.60 2.03 41.94 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.57 -31.44 9.53 24.79 0.24 -31.20 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.53 30.44 7.58 86.30 0.65 31.09 16 10 O -0.61 -39.53 12.44 -4.52 -0.06 -39.59 16 11 N -0.69 -32.15 5.31 -307.62 -1.63 -33.78 16 12 C 0.16 6.78 6.29 38.26 0.24 7.02 16 13 C -0.15 -6.75 8.69 22.46 0.20 -6.55 16 14 C -0.10 -3.31 10.03 22.22 0.22 -3.09 16 15 C -0.14 -3.77 9.44 22.53 0.21 -3.56 16 16 C -0.03 -0.92 5.87 -20.06 -0.12 -1.04 16 17 C -0.10 -2.43 5.89 -19.95 -0.12 -2.55 16 18 C -0.07 -1.32 9.53 22.68 0.22 -1.11 16 19 C -0.16 -2.32 10.10 22.33 0.23 -2.10 16 20 C 0.08 1.46 11.17 84.70 0.95 2.40 16 21 N -0.51 -12.58 10.35 -194.95 -2.02 -14.60 16 22 C 0.09 2.29 10.60 84.96 0.90 3.19 16 23 C -0.16 -5.42 9.36 22.63 0.21 -5.21 16 24 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16 25 H 0.41 15.89 8.80 -92.71 -0.82 15.08 16 26 H 0.10 5.30 6.21 -2.91 -0.02 5.28 16 27 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.16 2.97 6.27 -2.91 -0.02 2.95 16 29 H 0.16 2.09 6.32 -2.91 -0.02 2.07 16 30 H 0.17 1.16 8.06 -2.92 -0.02 1.13 16 31 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.16 3.83 6.23 -2.91 -0.02 3.81 16 33 H 0.14 4.10 6.23 -2.91 -0.02 4.08 16 Total: -1.00 -76.87 290.76 3.43 -73.44 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.35 Total: 31.58 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 4.50 Total: -10.61 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.39 Total: -96.76 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.06 Total: -39.59 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -76.87 3.43 -73.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.707 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds