Wall clock time and date at job start Mon Mar 30 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35678 * 117.00215 * 2 1 4 4 C 1.39058 * 119.89267 * 0.03380 * 3 2 1 5 5 C 1.37588 * 120.13327 * 179.97438 * 4 3 2 6 6 C 1.40046 * 119.90800 * 359.97438 * 5 4 3 7 7 C 1.46850 * 120.11311 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00322 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99950 * 180.02562 * 7 6 5 10 10 H 1.08999 * 109.47421 * 35.00136 * 9 7 6 11 11 C 1.53006 * 109.47144 * 275.00187 * 9 7 6 12 12 C 1.50703 * 109.47395 * 155.00479 * 9 7 6 13 13 H 1.07995 * 119.99407 * 359.97438 * 12 9 7 14 14 C 1.37872 * 120.00168 * 180.02562 * 12 9 7 15 15 N 1.31521 * 119.99998 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00035 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.46886 * 59.99433 * 16 14 12 18 18 H 1.48494 * 109.47041 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46609 * 299.99653 * 16 14 12 20 20 C 1.40037 * 119.77562 * 359.73230 * 6 5 4 21 21 C 1.37705 * 119.87018 * 0.54531 * 20 6 5 22 22 Cl 1.73599 * 119.95681 * 179.73266 * 21 20 6 23 23 H 1.08997 * 109.47623 * 179.97438 * 1 2 3 24 24 H 1.09012 * 109.46725 * 299.99539 * 1 2 3 25 25 H 1.08999 * 109.47191 * 59.98938 * 1 2 3 26 26 H 1.08005 * 119.93333 * 359.94213 * 4 3 2 27 27 H 1.08005 * 120.04699 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47317 * 59.99688 * 11 9 7 29 29 H 1.08997 * 109.47159 * 180.02562 * 11 9 7 30 30 H 1.08999 * 109.46919 * 300.00256 * 11 9 7 31 31 H 0.97000 * 119.99473 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.06269 * 180.29801 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2855 2.3737 0.0007 5 6 1.9051 3.6022 0.0012 6 6 3.3034 3.6791 0.0016 7 6 3.9694 4.9879 0.0016 8 8 3.3082 6.0048 0.0018 9 6 5.4742 5.0677 0.0014 10 1 5.8816 4.2463 -0.5881 11 6 5.9904 4.9690 1.4384 12 6 5.9077 6.3802 -0.5989 13 1 5.1675 7.0858 -0.9460 14 6 7.2493 6.6797 -0.7060 15 7 8.1507 5.8201 -0.2837 16 14 7.7866 8.3064 -1.4508 17 1 7.2320 9.4257 -0.6477 18 1 9.2694 8.3850 -1.4508 19 1 7.2853 8.4018 -2.8453 20 6 4.0645 2.5036 0.0071 21 6 3.4350 1.2789 0.0008 22 17 4.3763 -0.1797 0.0006 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 0.2071 2.3140 0.0003 27 1 1.3138 4.5061 0.0014 28 1 5.6769 4.0196 1.8727 29 1 7.0788 5.0271 1.4383 30 1 5.5830 5.7903 2.0280 31 1 9.0945 6.0311 -0.3588 32 1 5.1432 2.5575 0.0123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083188561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:38 Heat of formation + Delta-G solvation = -61.141007 kcal Electronic energy + Delta-G solvation = -17760.595468 eV Core-core repulsion = 14712.564829 eV Total energy + Delta-G solvation = -3048.030639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32575 -38.76394 -37.00313 -36.12233 -33.84308 -31.30006 -30.71649 -29.72995 -27.58212 -25.18737 -24.10557 -22.58337 -21.65953 -18.99032 -18.34457 -16.60024 -16.29360 -16.00287 -15.76102 -14.93973 -14.68810 -14.10564 -13.97182 -13.81012 -13.28381 -12.97955 -12.84099 -12.40205 -12.05041 -11.58671 -11.56734 -11.15868 -11.03264 -10.99082 -10.80945 -10.72289 -10.67108 -10.27260 -10.06190 -9.02015 -8.88075 -8.57115 -8.32293 -8.17113 -6.04240 -4.09312 0.92498 1.22245 2.24196 2.96788 3.01460 3.34551 3.37773 3.42558 3.98531 4.41529 4.64605 4.71574 4.85143 4.91835 5.03641 5.23586 5.28252 5.33184 5.43600 5.71967 5.91975 6.09091 6.32121 6.55853 6.61217 6.74135 6.87770 6.97736 7.10015 7.47819 7.76003 7.99108 8.22448 8.59564 8.95227 9.55597 11.02590 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029399 B = 0.004965 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.182585 B = 5638.290215 C = 6313.354004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.152 3.848 4 C -0.215 4.215 5 C -0.027 4.027 6 C -0.179 4.179 7 C 0.402 3.598 8 O -0.462 6.462 9 C 0.005 3.995 10 H 0.053 0.947 11 C -0.130 4.130 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.021 4.021 21 C -0.082 4.082 22 Cl -0.059 7.059 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.015 0.985 29 H 0.095 0.905 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -12.155 1.360 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.105 3.895 4 C -0.234 4.234 5 C -0.046 4.046 6 C -0.180 4.180 7 C 0.280 3.720 8 O -0.338 6.338 9 C -0.014 4.014 10 H 0.071 0.929 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.085 0.915 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.040 4.040 21 C -0.109 4.109 22 Cl -0.030 7.030 23 H 0.120 0.880 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.034 0.966 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.430 -11.971 1.374 17.311 hybrid contribution 0.153 0.700 -0.394 0.818 sum -12.277 -11.271 0.980 16.695 Atomic orbital electron populations 1.23124 0.78096 1.04124 1.01635 1.86098 1.21550 1.26166 1.87885 1.18926 0.90508 0.84989 0.95065 1.21099 1.00091 0.91466 1.10710 1.21352 0.94056 0.97503 0.91663 1.21028 0.93812 0.96370 1.06813 1.23220 0.93809 0.85407 0.69556 1.90370 1.68789 1.37886 1.36717 1.19154 0.86267 0.99927 0.96035 0.92940 1.21692 1.05193 0.96849 0.95022 1.21027 0.92095 1.01705 1.39770 0.91499 1.24926 0.96506 0.97136 0.95349 1.69853 1.01045 1.35297 1.46925 0.86547 0.77147 0.83899 0.79811 1.20161 1.21272 1.20203 1.21490 1.01727 0.88690 0.92089 1.20067 0.88520 0.88935 1.13406 1.98355 1.71921 1.35474 1.97243 0.88046 0.92372 0.92364 0.84461 0.84260 0.96642 0.88639 0.94860 0.92793 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.68 9.93 -18.74 -0.19 -3.87 16 3 C 0.15 2.09 6.69 -38.93 -0.26 1.83 16 4 C -0.21 -2.73 9.01 -39.51 -0.36 -3.09 16 5 C -0.03 -0.42 9.59 -39.14 -0.38 -0.79 16 6 C -0.18 -3.24 5.87 -105.06 -0.62 -3.86 16 7 C 0.40 8.94 6.21 -30.83 -0.19 8.75 16 8 O -0.46 -11.28 15.79 5.55 0.09 -11.19 16 9 C 0.00 0.12 1.92 -92.92 -0.18 -0.06 16 10 H 0.05 1.30 6.74 -51.93 -0.35 0.95 16 11 C -0.13 -3.02 8.95 37.16 0.33 -2.69 16 12 C -0.51 -14.12 8.33 -34.44 -0.29 -14.41 16 13 H 0.07 1.93 7.03 -52.49 -0.37 1.56 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C -0.02 -0.36 9.10 -39.10 -0.36 -0.71 16 21 C -0.08 -1.25 6.32 -39.43 -0.25 -1.50 16 22 Cl -0.06 -0.84 28.49 -51.86 -1.48 -2.32 16 23 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.37 7.65 -51.92 -0.40 -0.02 16 25 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 26 H 0.14 1.29 6.27 -52.48 -0.33 0.96 16 27 H 0.14 2.03 7.64 -52.48 -0.40 1.63 16 28 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.16 2.68 6.47 -52.49 -0.34 2.34 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -30.11 291.74 -6.51 -36.62 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.30 Total: -2.23 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.64 Total: -13.74 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.10 Total: -15.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.11 -6.51 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083188561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.517 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds