Wall clock time and date at job start Mon Mar 30 2020 08:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 H 1.08994 * 109.47123 * 185.93529 * 3 2 1 5 5 C 1.50702 * 109.46849 * 305.93239 * 3 2 1 6 6 H 1.08006 * 119.99987 * 119.99758 * 5 3 2 7 7 C 1.37871 * 120.00213 * 299.99896 * 5 3 2 8 8 N 1.31515 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00182 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47314 * 60.00039 * 9 7 5 11 11 H 1.48501 * 109.47060 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47045 * 299.99803 * 9 7 5 13 13 S 1.81401 * 109.46956 * 65.93136 * 3 2 1 14 14 O 1.42102 * 110.53986 * 165.44227 * 13 3 2 15 15 O 1.42098 * 110.54370 * 302.19173 * 13 3 2 16 16 C 1.76196 * 104.45172 * 53.81920 * 13 3 2 17 17 C 1.38239 * 119.99645 * 273.51913 * 16 13 3 18 18 C 1.38232 * 119.99509 * 179.78647 * 17 16 13 19 19 C 1.38235 * 120.00486 * 0.46271 * 18 17 16 20 20 C 1.50697 * 120.00171 * 179.78785 * 19 18 17 21 21 C 1.38237 * 119.99735 * 359.76887 * 19 18 17 22 22 C 1.38229 * 120.00009 * 93.78885 * 16 13 3 23 23 H 1.09000 * 109.47152 * 173.49553 * 1 2 3 24 24 H 1.08996 * 109.46958 * 293.49653 * 1 2 3 25 25 H 1.09001 * 109.47175 * 53.49572 * 1 2 3 26 26 H 1.08994 * 109.47324 * 240.00230 * 2 1 3 27 27 H 1.08998 * 109.47127 * 119.99646 * 2 1 3 28 28 H 0.97002 * 120.00339 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.00227 * 359.97438 * 17 16 13 30 30 H 1.08009 * 119.99909 * 180.24670 * 18 17 16 31 31 H 1.08999 * 109.47308 * 269.97628 * 20 19 18 32 32 H 1.09004 * 109.47082 * 29.98108 * 20 19 18 33 33 H 1.09009 * 109.46892 * 149.97789 * 20 19 18 34 34 H 1.07998 * 119.99977 * 180.02562 * 21 19 18 35 35 H 1.07994 * 120.00209 * 359.97438 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 -0.1063 5 6 1.4214 2.1940 -1.1505 6 1 0.8145 3.0672 -0.9612 7 6 1.6300 1.7670 -2.4447 8 7 2.3686 0.7035 -2.6752 9 14 0.8637 2.6989 -3.8708 10 1 1.3593 4.0987 -3.8707 11 1 1.2365 2.0414 -5.1491 12 1 -0.6142 2.6969 -3.7263 13 16 1.5840 2.2451 1.5616 14 8 2.3164 3.4504 1.7352 15 8 0.1756 2.2104 1.7473 16 6 2.2133 1.1708 2.8083 17 6 1.4520 0.1053 3.2512 18 6 1.9476 -0.7401 4.2262 19 6 3.2004 -0.5146 4.7651 20 6 3.7386 -1.4334 5.8313 21 6 3.9597 0.5537 4.3255 22 6 3.4659 1.3966 3.3474 23 1 -0.3633 -1.0210 -0.1164 24 1 -0.3633 0.4097 0.9424 25 1 -0.3633 0.6113 -0.8261 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5157 0.4032 -3.5858 29 1 0.4713 -0.0683 2.8334 30 1 1.3544 -1.5749 4.5694 31 1 3.4497 -1.0590 6.8134 32 1 3.3297 -2.4338 5.6891 33 1 4.8258 -1.4721 5.7627 34 1 4.9387 0.7297 4.7462 35 1 4.0591 2.2313 3.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084240747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:58 Heat of formation + Delta-G solvation = -60.571742 kcal Electronic energy + Delta-G solvation = -18898.692309 eV Core-core repulsion = 15988.563156 eV Total energy + Delta-G solvation = -2910.129153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.11092 -36.26581 -35.03371 -34.90614 -32.89052 -31.49940 -30.79765 -27.39373 -27.13421 -24.10590 -22.62758 -21.60510 -20.63231 -18.42494 -17.06353 -16.49537 -15.76372 -15.41806 -15.06558 -14.46737 -14.24306 -14.07735 -13.80135 -13.40159 -13.15197 -12.70031 -12.35574 -12.32948 -12.13040 -11.77618 -11.68176 -11.11112 -11.08122 -11.00711 -10.89699 -10.73734 -10.61842 -10.29906 -10.14955 -9.81235 -9.44268 -8.98935 -8.80197 -8.72797 -8.54810 -6.29141 -4.42935 1.00098 1.29359 1.52412 3.22809 3.25817 3.30495 3.66748 3.94001 4.23849 4.79369 4.81917 4.88817 4.97660 5.10938 5.11000 5.43923 5.44551 5.53817 5.68318 5.78984 5.99924 6.09637 6.16622 6.25182 6.33386 6.36233 6.45528 6.57654 6.86897 6.91299 6.96755 7.07246 7.43824 7.48940 7.58849 7.87718 8.54332 9.23117 10.76524 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031581 B = 0.006174 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.391392 B = 4533.889034 C = 4718.067470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.355 4.355 4 H 0.093 0.907 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.084 3.916 8 N -0.873 5.873 9 Si 0.901 3.099 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 S 2.457 3.543 14 O -0.969 6.969 15 O -0.955 6.955 16 C -0.650 4.650 17 C -0.016 4.016 18 C -0.147 4.147 19 C -0.049 4.049 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.024 4.024 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.032 0.968 28 H 0.268 0.732 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -5.383 10.943 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.147 4.147 3 C -0.471 4.471 4 H 0.111 0.889 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.123 4.123 8 N -0.509 5.509 9 Si 0.727 3.273 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 S 2.642 3.358 14 O -0.966 6.966 15 O -0.952 6.952 16 C -0.734 4.734 17 C -0.035 4.035 18 C -0.166 4.166 19 C -0.049 4.049 20 C -0.175 4.175 21 C -0.166 4.166 22 C -0.042 4.042 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.814 -4.732 11.048 12.155 hybrid contribution 0.197 -0.345 -0.704 0.808 sum 2.011 -5.077 10.344 11.697 Atomic orbital electron populations 1.22090 0.96243 1.00081 1.03900 1.21389 0.95871 0.95081 1.02404 1.27308 1.06555 1.03910 1.09320 0.88892 1.20252 1.33753 1.12720 0.89472 0.91215 1.24807 0.94213 0.94703 0.98533 1.69847 1.36686 1.22975 1.21379 0.86488 0.80112 0.80192 0.80531 1.19530 1.20812 1.19453 1.07143 0.75033 0.75690 0.77953 1.93427 1.73650 1.43143 1.86378 1.93419 1.29089 1.86615 1.86071 1.31113 1.05400 1.15748 1.21122 1.20998 0.98477 0.90825 0.93190 1.21115 0.96008 1.00744 0.98751 1.20135 0.94117 0.95015 0.95597 1.20871 1.01356 0.98333 0.96911 1.21099 1.00314 0.96004 0.99175 1.20974 0.93091 0.97013 0.93163 0.94784 0.91854 0.90607 0.87414 0.94897 0.92197 0.84229 0.85601 0.90885 0.91272 0.91301 0.85626 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.22 37.16 0.34 -3.13 16 2 C -0.11 -2.34 5.19 -26.73 -0.14 -2.48 16 3 C -0.35 -8.29 2.63 -27.88 -0.07 -8.36 16 4 H 0.09 2.20 8.14 -51.93 -0.42 1.77 16 5 C -0.52 -13.58 6.95 -34.44 -0.24 -13.82 16 6 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 7 C 0.08 2.16 5.26 -17.82 -0.09 2.07 16 8 N -0.87 -22.90 11.39 55.43 0.63 -22.27 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 13 S 2.46 53.92 4.52 -107.50 -0.49 53.43 16 14 O -0.97 -23.33 17.03 -57.54 -0.98 -24.31 16 15 O -0.95 -22.23 14.46 -57.54 -0.83 -23.06 16 16 C -0.65 -12.07 4.93 -39.58 -0.20 -12.27 16 17 C -0.02 -0.27 7.96 -39.58 -0.32 -0.59 16 18 C -0.15 -2.06 9.70 -39.58 -0.38 -2.44 16 19 C -0.05 -0.63 5.88 -104.63 -0.62 -1.25 16 20 C -0.12 -1.07 10.01 36.00 0.36 -0.71 16 21 C -0.15 -2.05 9.70 -39.58 -0.38 -2.43 16 22 C -0.02 -0.40 9.47 -39.58 -0.38 -0.77 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.28 4.55 -51.93 -0.24 1.05 16 25 H 0.07 1.74 6.76 -51.93 -0.35 1.39 16 26 H 0.11 2.56 6.25 -51.93 -0.32 2.24 16 27 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.14 2.25 6.61 -52.49 -0.35 1.90 16 30 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.14 2.22 7.48 -52.49 -0.39 1.83 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -30.21 295.51 -8.80 -39.01 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.45 Total: 3.76 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: -2.11 Total: -46.19 kcal Atomic # 7 Polarization: -22.90 SS G_CDS: 0.63 Total: -22.27 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.81 Total: -47.37 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.49 Total: 53.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.21 -8.80 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.559 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds