Wall clock time and date at job start Mon Mar 30 2020 08:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 H 1.08994 * 109.47123 * 185.93529 * 3 2 1 5 5 C 1.50702 * 109.46849 * 305.93239 * 3 2 1 6 6 H 1.08006 * 119.99987 * 119.99758 * 5 3 2 7 7 C 1.37871 * 120.00213 * 299.99896 * 5 3 2 8 8 N 1.31515 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00182 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47314 * 60.00039 * 9 7 5 11 11 H 1.48501 * 109.47060 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47045 * 299.99803 * 9 7 5 13 13 S 1.81401 * 109.46956 * 65.93136 * 3 2 1 14 14 O 1.42102 * 110.53986 * 165.44227 * 13 3 2 15 15 O 1.42098 * 110.54370 * 302.19173 * 13 3 2 16 16 C 1.76196 * 104.45172 * 53.81920 * 13 3 2 17 17 C 1.38239 * 119.99645 * 273.51913 * 16 13 3 18 18 C 1.38232 * 119.99509 * 179.78647 * 17 16 13 19 19 C 1.38235 * 120.00486 * 0.46271 * 18 17 16 20 20 C 1.50697 * 120.00171 * 179.78785 * 19 18 17 21 21 C 1.38237 * 119.99735 * 359.76887 * 19 18 17 22 22 C 1.38229 * 120.00009 * 93.78885 * 16 13 3 23 23 H 1.09000 * 109.47152 * 173.49553 * 1 2 3 24 24 H 1.08996 * 109.46958 * 293.49653 * 1 2 3 25 25 H 1.09001 * 109.47175 * 53.49572 * 1 2 3 26 26 H 1.08994 * 109.47324 * 240.00230 * 2 1 3 27 27 H 1.08998 * 109.47127 * 119.99646 * 2 1 3 28 28 H 0.97002 * 120.00339 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.00227 * 359.97438 * 17 16 13 30 30 H 1.08009 * 119.99909 * 180.24670 * 18 17 16 31 31 H 1.08999 * 109.47308 * 269.97628 * 20 19 18 32 32 H 1.09004 * 109.47082 * 29.98108 * 20 19 18 33 33 H 1.09009 * 109.46892 * 149.97789 * 20 19 18 34 34 H 1.07998 * 119.99977 * 180.02562 * 21 19 18 35 35 H 1.07994 * 120.00209 * 359.97438 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 -0.1063 5 6 1.4214 2.1940 -1.1505 6 1 0.8145 3.0672 -0.9612 7 6 1.6300 1.7670 -2.4447 8 7 2.3686 0.7035 -2.6752 9 14 0.8637 2.6989 -3.8708 10 1 1.3593 4.0987 -3.8707 11 1 1.2365 2.0414 -5.1491 12 1 -0.6142 2.6969 -3.7263 13 16 1.5840 2.2451 1.5616 14 8 2.3164 3.4504 1.7352 15 8 0.1756 2.2104 1.7473 16 6 2.2133 1.1708 2.8083 17 6 1.4520 0.1053 3.2512 18 6 1.9476 -0.7401 4.2262 19 6 3.2004 -0.5146 4.7651 20 6 3.7386 -1.4334 5.8313 21 6 3.9597 0.5537 4.3255 22 6 3.4659 1.3966 3.3474 23 1 -0.3633 -1.0210 -0.1164 24 1 -0.3633 0.4097 0.9424 25 1 -0.3633 0.6113 -0.8261 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5157 0.4032 -3.5858 29 1 0.4713 -0.0683 2.8334 30 1 1.3544 -1.5749 4.5694 31 1 3.4497 -1.0590 6.8134 32 1 3.3297 -2.4338 5.6891 33 1 4.8258 -1.4721 5.7627 34 1 4.9387 0.7297 4.7462 35 1 4.0591 2.2313 3.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084240747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:57 Heat of formation + Delta-G solvation = -79.229855 kcal Electronic energy + Delta-G solvation = -18899.501386 eV Core-core repulsion = 15988.563156 eV Total energy + Delta-G solvation = -2910.938230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25873 -38.07581 -36.86978 -36.72874 -34.03470 -33.31677 -31.97538 -29.22202 -28.13580 -25.97524 -23.79178 -22.76997 -22.41978 -19.97443 -18.80567 -18.24911 -17.51740 -16.94602 -16.28206 -16.03180 -15.93128 -15.34446 -14.97333 -14.66896 -14.59465 -14.41487 -14.10436 -13.53475 -13.19931 -13.10570 -12.97202 -12.93961 -12.87359 -12.80263 -12.60698 -12.37976 -12.04350 -12.01578 -11.81170 -11.42823 -11.26766 -10.77941 -10.49126 -9.97748 -9.93486 -8.25608 -6.45598 -0.56090 -0.08733 0.36065 1.41870 1.42640 1.50473 2.25604 2.37159 2.52654 3.01427 3.16343 3.42666 3.83809 3.91480 4.00935 4.33791 4.38404 4.41043 4.53302 4.59587 4.71688 4.74601 4.85699 5.05300 5.10828 5.13666 5.15987 5.20900 5.23880 5.29697 5.48154 5.52125 5.61138 5.81990 5.95780 6.02480 6.55800 7.22670 8.79251 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031581 B = 0.006174 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.391392 B = 4533.889034 C = 4718.067470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 C -0.368 4.368 4 H 0.081 0.919 5 C -0.547 4.547 6 H 0.058 0.942 7 C 0.045 3.955 8 N -0.892 5.892 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.266 1.266 13 S 2.470 3.530 14 O -1.001 7.001 15 O -0.975 6.975 16 C -0.667 4.667 17 C -0.033 4.033 18 C -0.146 4.146 19 C -0.038 4.038 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.045 4.045 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.271 0.729 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -7.273 12.934 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.140 4.140 3 C -0.483 4.483 4 H 0.099 0.901 5 C -0.585 4.585 6 H 0.076 0.924 7 C -0.159 4.159 8 N -0.528 5.528 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.196 1.196 12 H -0.191 1.191 13 S 2.660 3.340 14 O -0.998 6.998 15 O -0.973 6.973 16 C -0.756 4.756 17 C -0.052 4.052 18 C -0.164 4.164 19 C -0.038 4.038 20 C -0.173 4.173 21 C -0.164 4.164 22 C -0.064 4.064 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.176 0.824 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.277 -6.590 12.988 14.741 hybrid contribution 0.119 0.161 -1.156 1.173 sum 2.396 -6.430 11.832 13.677 Atomic orbital electron populations 1.22043 0.95736 1.01209 1.03031 1.21286 0.96282 0.93848 1.02550 1.27342 1.05618 1.05060 1.10323 0.90146 1.20494 1.34099 1.12905 0.91027 0.92432 1.25464 0.94563 0.95425 1.00452 1.69929 1.37266 1.23713 1.21896 0.85741 0.79496 0.79165 0.78347 1.19445 1.19640 1.19110 1.06131 0.74412 0.75604 0.77897 1.93374 1.74145 1.45427 1.86838 1.93378 1.30379 1.87140 1.86380 1.30376 1.07060 1.16753 1.21364 1.21163 0.98528 0.91012 0.94507 1.21532 0.96723 1.00768 0.97384 1.20694 0.93301 0.94561 0.95252 1.20988 1.02313 0.98063 0.95956 1.21496 1.01719 0.95327 0.97871 1.21141 0.92648 0.98014 0.94553 0.92149 0.91363 0.93247 0.89589 0.92215 0.91971 0.84274 0.82181 0.89135 0.89657 0.89781 0.82368 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.86 9.22 71.98 0.66 -6.20 16 2 C -0.10 -4.41 5.19 30.60 0.16 -4.25 16 3 C -0.37 -17.86 2.63 29.85 0.08 -17.78 16 4 H 0.08 4.01 8.14 -2.39 -0.02 3.99 16 5 C -0.55 -29.48 6.95 25.60 0.18 -29.31 16 6 H 0.06 3.14 7.71 -2.91 -0.02 3.12 16 7 C 0.05 2.38 5.26 84.65 0.44 2.83 16 8 N -0.89 -47.70 11.39 21.45 0.24 -47.46 16 9 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 S 2.47 112.06 4.52 -56.49 -0.26 111.80 16 14 O -1.00 -50.27 17.03 -127.65 -2.17 -52.44 16 15 O -0.98 -46.73 14.46 -127.65 -1.85 -48.57 16 16 C -0.67 -24.60 4.93 22.27 0.11 -24.49 16 17 C -0.03 -1.06 7.96 22.27 0.18 -0.88 16 18 C -0.15 -3.53 9.70 22.27 0.22 -3.31 16 19 C -0.04 -0.83 5.88 -19.87 -0.12 -0.94 16 20 C -0.12 -1.48 10.01 71.23 0.71 -0.76 16 21 C -0.15 -3.61 9.70 22.27 0.22 -3.39 16 22 C -0.04 -1.46 9.47 22.27 0.21 -1.25 16 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.07 2.78 4.55 -2.39 -0.01 2.77 16 25 H 0.05 2.32 6.76 -2.39 -0.02 2.30 16 26 H 0.09 4.17 6.25 -2.39 -0.01 4.15 16 27 H 0.06 2.25 5.96 -2.39 -0.01 2.23 16 28 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.14 4.33 6.61 -2.91 -0.02 4.31 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 33 H 0.08 0.87 8.09 -2.38 -0.02 0.85 16 34 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.13 4.37 7.48 -2.91 -0.02 4.34 16 Total: -1.00 -66.86 295.51 2.13 -64.73 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.09 Total: 17.77 kcal Atomic # 6 Polarization: -92.79 SS G_CDS: 3.05 Total: -89.74 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.24 Total: -47.46 kcal Atomic # 8 Polarization: -97.00 SS G_CDS: -4.02 Total: -101.02 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 112.06 SS G_CDS: -0.26 Total: 111.80 kcal Total: -66.86 2.13 -64.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.502 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds