Wall clock time and date at job start Mon Mar 30 2020 08:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46815 * 2 1 4 4 H 1.09001 * 109.46531 * 172.54711 * 3 2 1 5 5 C 1.50695 * 109.46890 * 52.55063 * 3 2 1 6 6 H 1.08004 * 120.00004 * 239.99319 * 5 3 2 7 7 C 1.37879 * 120.00497 * 60.00214 * 5 3 2 8 8 N 1.31517 * 119.99533 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00308 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47159 * 60.00067 * 9 7 5 11 11 H 1.48506 * 109.47060 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47284 * 299.99589 * 9 7 5 13 13 S 1.81394 * 109.47131 * 292.54925 * 3 2 1 14 14 O 1.42100 * 110.54290 * 187.97981 * 13 3 2 15 15 O 1.42105 * 110.54470 * 51.22865 * 13 3 2 16 16 C 1.76199 * 104.44955 * 299.60631 * 13 3 2 17 17 C 1.38232 * 120.00347 * 87.03111 * 16 13 3 18 18 C 1.38234 * 120.00123 * 179.97438 * 17 16 13 19 19 C 1.38232 * 120.00082 * 0.27163 * 18 17 16 20 20 C 1.50705 * 119.99796 * 179.72939 * 19 18 17 21 21 C 1.38236 * 120.00000 * 359.51416 * 19 18 17 22 22 C 1.38235 * 119.99911 * 267.00364 * 16 13 3 23 23 H 1.09000 * 109.47078 * 177.96405 * 1 2 3 24 24 H 1.08999 * 109.47684 * 297.96813 * 1 2 3 25 25 H 1.09001 * 109.47170 * 57.97236 * 1 2 3 26 26 H 1.08997 * 109.47772 * 240.00289 * 2 1 3 27 27 H 1.08994 * 109.47247 * 119.99401 * 2 1 3 28 28 H 0.97004 * 119.99826 * 180.02562 * 8 7 5 29 29 H 1.07999 * 119.99817 * 359.97158 * 17 16 13 30 30 H 1.08008 * 119.99657 * 179.97438 * 18 17 16 31 31 H 1.09001 * 109.47056 * 90.00455 * 20 19 18 32 32 H 1.09003 * 109.46525 * 209.99829 * 20 19 18 33 33 H 1.08996 * 109.46936 * 330.00149 * 20 19 18 34 34 H 1.07995 * 120.00315 * 180.27653 * 21 19 18 35 35 H 1.08006 * 120.00098 * 359.97438 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1217 1.4455 0.1333 5 6 1.3928 2.2041 1.1279 6 1 0.7909 3.0755 0.9159 7 6 1.5690 1.7886 2.4308 8 7 2.3016 0.7273 2.6890 9 14 0.7674 2.7329 3.8289 10 1 -0.7064 2.7294 3.6476 11 1 1.1081 2.0868 5.1219 12 1 1.2629 4.1328 3.8289 13 16 1.6231 2.2313 -1.5795 14 8 2.2422 3.5064 -1.6788 15 8 0.2429 2.0622 -1.8724 16 6 2.4473 1.2524 -2.7907 17 6 1.8267 0.1338 -3.3146 18 6 2.4732 -0.6338 -4.2652 19 6 3.7426 -0.2860 -4.6878 20 6 4.4498 -1.1264 -5.7198 21 6 4.3615 0.8351 -4.1672 22 6 3.7144 1.6034 -3.2175 23 1 -0.3633 -1.0270 -0.0365 24 1 -0.3634 0.4819 0.9076 25 1 -0.3633 0.5450 -0.8713 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.4253 0.4347 3.6055 29 1 0.8368 -0.1404 -2.9811 30 1 1.9884 -1.5080 -4.6742 31 1 4.2136 -0.7531 -6.7162 32 1 5.5262 -1.0718 -5.5570 33 1 4.1210 -2.1619 -5.6323 34 1 5.3514 1.1093 -4.5007 35 1 4.1990 2.4778 -2.8088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084240749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:00 Heat of formation + Delta-G solvation = -59.495468 kcal Electronic energy + Delta-G solvation = -18865.168356 eV Core-core repulsion = 15955.085874 eV Total energy + Delta-G solvation = -2910.082482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.10868 -36.28661 -35.03889 -34.89890 -32.88473 -31.47577 -30.81457 -27.34890 -27.16388 -24.09338 -22.63896 -21.61525 -20.61691 -18.43536 -17.08441 -16.50411 -15.76471 -15.43119 -15.06313 -14.46808 -14.23746 -14.07428 -13.81533 -13.37804 -13.15983 -12.67973 -12.36085 -12.34188 -12.12799 -11.79486 -11.74473 -11.11556 -11.06735 -11.01463 -10.91856 -10.72691 -10.56636 -10.24311 -10.15125 -9.82561 -9.43850 -8.94696 -8.80450 -8.73235 -8.53742 -6.28764 -4.42455 0.99357 1.28197 1.51641 3.22983 3.25957 3.30637 3.65993 3.93559 4.24175 4.78831 4.81366 4.86810 4.97410 5.10346 5.10645 5.43031 5.44197 5.53387 5.67921 5.78235 5.99358 6.10877 6.17324 6.26506 6.34791 6.35972 6.45388 6.57234 6.91843 6.97247 6.99224 7.06439 7.44259 7.50417 7.62565 7.88074 8.54551 9.23565 10.76979 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.006114 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.551178 B = 4578.409827 C = 4717.988426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 C -0.354 4.354 4 H 0.093 0.907 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.084 3.916 8 N -0.873 5.873 9 Si 0.901 3.099 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 S 2.456 3.544 14 O -0.966 6.966 15 O -0.955 6.955 16 C -0.651 4.651 17 C -0.017 4.017 18 C -0.147 4.147 19 C -0.049 4.049 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.024 4.024 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.106 0.894 28 H 0.268 0.732 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -4.913 -10.863 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.145 4.145 3 C -0.470 4.470 4 H 0.110 0.890 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.122 4.122 8 N -0.509 5.509 9 Si 0.727 3.273 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 S 2.641 3.359 14 O -0.964 6.964 15 O -0.952 6.952 16 C -0.735 4.735 17 C -0.035 4.035 18 C -0.166 4.166 19 C -0.049 4.049 20 C -0.175 4.175 21 C -0.166 4.166 22 C -0.042 4.042 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.865 -4.301 -10.988 12.142 hybrid contribution 0.266 -0.298 0.736 0.837 sum 3.132 -4.599 -10.251 11.664 Atomic orbital electron populations 1.22175 0.96169 0.99768 1.04783 1.21352 0.96097 0.94899 1.02122 1.27283 1.06499 1.03867 1.09357 0.88955 1.20241 1.33576 1.12631 0.89768 0.91256 1.24805 0.94292 0.94720 0.98427 1.69855 1.37169 1.23257 1.20603 0.86491 0.80204 0.80252 0.80398 1.19463 1.20812 1.19519 1.07181 0.74876 0.75659 0.78139 1.93428 1.77575 1.38322 1.87040 1.93380 1.30995 1.86184 1.84667 1.31128 1.08044 1.13436 1.20853 1.20970 0.98859 0.91070 0.92638 1.21116 0.95156 1.00954 0.99384 1.20139 0.94317 0.94803 0.95599 1.20872 1.00259 0.99076 0.97268 1.21102 1.00480 0.95950 0.99041 1.20982 0.92199 0.97448 0.93586 0.95077 0.91218 0.90350 0.95105 0.87604 0.92211 0.84250 0.85586 0.90878 0.91287 0.91268 0.85604 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.33 37.15 0.35 -3.30 16 2 C -0.11 -2.30 5.33 -26.73 -0.14 -2.44 16 3 C -0.35 -8.27 2.58 -27.88 -0.07 -8.34 16 4 H 0.09 2.17 8.14 -51.92 -0.42 1.75 16 5 C -0.52 -13.60 7.07 -34.44 -0.24 -13.85 16 6 H 0.07 1.80 7.71 -52.48 -0.40 1.40 16 7 C 0.08 2.17 5.13 -17.82 -0.09 2.08 16 8 N -0.87 -22.94 11.41 55.43 0.63 -22.31 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 S 2.46 53.73 4.57 -107.50 -0.49 53.24 16 14 O -0.97 -23.28 17.05 -57.54 -0.98 -24.26 16 15 O -0.96 -22.03 14.11 -57.54 -0.81 -22.84 16 16 C -0.65 -12.07 5.14 -39.58 -0.20 -12.27 16 17 C -0.02 -0.28 8.04 -39.58 -0.32 -0.60 16 18 C -0.15 -2.05 9.70 -39.58 -0.38 -2.43 16 19 C -0.05 -0.63 5.88 -104.62 -0.62 -1.24 16 20 C -0.12 -1.07 10.01 36.01 0.36 -0.71 16 21 C -0.15 -2.05 9.70 -39.58 -0.38 -2.43 16 22 C -0.02 -0.40 9.47 -39.58 -0.38 -0.77 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.61 6.97 -51.93 -0.36 1.24 16 25 H 0.08 1.66 4.92 -51.93 -0.26 1.41 16 26 H 0.03 0.58 6.10 -51.93 -0.32 0.26 16 27 H 0.11 2.53 6.31 -51.93 -0.33 2.20 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.14 2.22 7.65 -52.49 -0.40 1.82 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.14 2.23 7.50 -52.48 -0.39 1.83 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -30.23 297.56 -8.86 -39.09 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.55 Total: 3.70 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: -2.12 Total: -46.31 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: 0.63 Total: -22.31 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -1.79 Total: -47.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.49 Total: 53.24 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.23 -8.86 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.403 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds