Wall clock time and date at job start Mon Mar 30 2020 07:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00368 * 2 1 4 4 C 1.38215 * 120.00106 * 180.20909 * 3 2 1 5 5 C 1.38258 * 119.99945 * 359.85085 * 4 3 2 6 6 S 1.76204 * 120.00082 * 179.97438 * 5 4 3 7 7 O 1.42094 * 104.27591 * 26.04986 * 6 5 4 8 8 O 1.42094 * 104.27677 * 153.91303 * 6 5 4 9 9 C 1.81402 * 104.44898 * 269.98072 * 6 5 4 10 10 H 1.09004 * 109.46853 * 64.99730 * 9 6 5 11 11 C 1.52998 * 109.47251 * 304.99934 * 9 6 5 12 12 C 1.50697 * 109.47221 * 184.99601 * 9 6 5 13 13 H 1.08002 * 119.99823 * 0.02562 * 12 9 6 14 14 C 1.37875 * 120.00202 * 179.97438 * 12 9 6 15 15 N 1.31517 * 119.99976 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00039 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46783 * 90.00457 * 16 14 12 18 18 H 1.48501 * 109.47224 * 210.00179 * 16 14 12 19 19 H 1.48493 * 109.47365 * 330.00435 * 16 14 12 20 20 C 1.38212 * 119.99786 * 359.96574 * 5 4 3 21 21 C 1.38218 * 119.99818 * 179.80879 * 2 1 3 22 22 C 1.50703 * 119.99968 * 0.02562 * 21 2 1 23 23 H 1.08995 * 109.47734 * 270.19185 * 1 2 3 24 24 H 1.09002 * 109.46829 * 30.19130 * 1 2 3 25 25 H 1.09000 * 109.47496 * 150.18444 * 1 2 3 26 26 H 1.08000 * 120.00288 * 0.04136 * 3 2 1 27 27 H 1.08003 * 119.99976 * 179.83615 * 4 3 2 28 28 H 1.09000 * 109.46931 * 60.00166 * 11 9 6 29 29 H 1.09005 * 109.46973 * 179.97438 * 11 9 6 30 30 H 1.08996 * 109.47378 * 300.00229 * 11 9 6 31 31 H 0.97003 * 120.00050 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.99681 * 180.02562 * 20 5 4 33 33 H 1.09002 * 109.47152 * 269.72462 * 22 21 2 34 34 H 1.09001 * 109.46980 * 149.72562 * 22 21 2 35 35 H 1.09004 * 109.47113 * 29.72543 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0002 -0.0056 6 16 6.0337 -0.0003 -0.0119 7 8 6.3863 1.2375 0.5904 8 8 6.3862 -1.2365 0.5937 9 6 6.4801 -0.0027 -1.7701 10 1 6.1485 0.9281 -2.2304 11 6 5.8036 -1.1852 -2.4665 12 6 7.9755 -0.1267 -1.9085 13 1 8.5954 -0.1975 -1.0270 14 6 8.5524 -0.1509 -3.1606 15 7 7.7975 -0.0652 -4.2341 16 14 10.4060 -0.3053 -3.3322 17 1 10.7784 -1.7410 -3.4055 18 1 10.8477 0.3845 -4.5709 19 1 11.0656 0.3177 -2.1566 20 6 3.5805 -1.1971 -0.0018 21 6 2.1980 -1.1970 0.0040 22 6 1.4444 -2.5021 0.0078 23 1 -0.3634 0.0034 1.0276 24 1 -0.3633 0.8883 -0.5168 25 1 -0.3634 -0.8916 -0.5109 26 1 1.6584 2.1326 0.0007 27 1 4.1205 2.1325 -0.0070 28 1 4.7219 -1.0954 -2.3664 29 1 6.0715 -1.1863 -3.5231 30 1 6.1350 -2.1160 -2.0062 31 1 8.2032 -0.0826 -5.1150 32 1 4.1205 -2.1324 -0.0023 33 1 1.2666 -2.8160 1.0363 34 1 2.0316 -3.2621 -0.5077 35 1 0.4901 -2.3721 -0.5026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084240980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:28 Heat of formation + Delta-G solvation = -63.341442 kcal Electronic energy + Delta-G solvation = -18597.377298 eV Core-core repulsion = 15687.128041 eV Total energy + Delta-G solvation = -2910.249256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.40718 -36.11254 -34.94033 -34.30874 -33.40043 -32.10884 -30.62357 -27.70256 -26.51047 -25.47115 -22.27499 -21.84663 -21.14747 -18.04000 -17.03202 -16.43321 -15.91223 -15.62687 -14.99256 -14.52673 -14.38159 -14.12249 -13.91994 -13.06608 -13.03295 -12.87050 -12.64190 -12.25235 -12.05137 -11.88001 -11.64871 -11.50909 -11.15550 -11.09815 -11.05954 -10.99417 -10.85535 -10.63321 -10.43506 -10.10102 -9.51444 -9.12197 -8.73927 -8.63098 -8.52492 -6.30611 -4.46182 1.00717 1.29333 1.50687 3.20676 3.26542 3.32378 3.63477 3.94098 4.23679 4.75198 4.79890 4.89321 4.96117 5.01156 5.04302 5.30136 5.40223 5.44837 5.51747 5.60918 5.75750 5.78791 5.83576 6.12108 6.19389 6.34304 6.40080 6.41769 6.48218 6.55941 6.62751 7.06782 7.08741 7.47169 7.49247 7.87342 8.53216 9.22078 10.75162 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.005680 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.680173 B = 4928.606503 C = 5113.340548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.029 4.029 5 C -0.645 4.645 6 S 2.458 3.542 7 O -0.966 6.966 8 O -0.960 6.960 9 C -0.358 4.358 10 H 0.094 0.906 11 C -0.139 4.139 12 C -0.528 4.528 13 H 0.071 0.929 14 C 0.081 3.919 15 N -0.875 5.875 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.017 4.017 21 C -0.115 4.115 22 C -0.115 4.115 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.027 0.973 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -1.275 4.059 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.049 4.049 3 C -0.161 4.161 4 C -0.047 4.047 5 C -0.729 4.729 6 S 2.643 3.357 7 O -0.963 6.963 8 O -0.957 6.957 9 C -0.474 4.474 10 H 0.112 0.888 11 C -0.198 4.198 12 C -0.567 4.567 13 H 0.089 0.911 14 C -0.125 4.125 15 N -0.511 5.511 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.036 4.036 21 C -0.116 4.116 22 C -0.172 4.172 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.046 0.954 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.909 -1.256 4.656 13.780 hybrid contribution 0.265 0.068 -0.726 0.776 sum -12.644 -1.188 3.930 13.294 Atomic orbital electron populations 1.20929 0.91234 1.03072 1.02465 1.19952 0.95888 0.92901 0.96181 1.21073 0.94242 0.97497 1.03300 1.20933 0.94408 0.97003 0.92370 1.31095 1.28206 0.98753 1.14826 1.07068 0.72964 0.74147 0.81513 1.93434 1.81517 1.44745 1.76626 1.93428 1.81334 1.44582 1.76351 1.27238 1.04941 1.04275 1.10992 0.88791 1.21713 0.95536 0.96162 1.06383 1.20393 0.87231 1.54922 0.94189 0.91105 1.24861 0.99200 0.93318 0.95138 1.69853 1.35609 1.47531 0.98121 0.86364 0.83615 0.78764 0.78175 1.19922 1.20671 1.19119 1.20832 0.93573 0.97110 0.92074 1.19830 0.93792 0.95057 1.02880 1.20847 0.99960 0.94044 1.02321 0.90892 0.91388 0.90886 0.85599 0.84400 0.95381 0.87614 0.93126 0.92195 0.84339 0.91234 0.91216 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.60 36.00 0.35 -0.77 16 2 C -0.05 -0.65 5.88 -104.63 -0.62 -1.27 16 3 C -0.14 -2.01 9.70 -39.58 -0.38 -2.40 16 4 C -0.03 -0.48 9.47 -39.58 -0.37 -0.86 16 5 C -0.65 -12.15 4.87 -39.58 -0.19 -12.35 16 6 S 2.46 54.86 4.59 -107.50 -0.49 54.37 16 7 O -0.97 -23.43 17.13 -57.54 -0.99 -24.42 16 8 O -0.96 -23.15 17.12 -57.54 -0.98 -24.13 16 9 C -0.36 -8.56 2.86 -27.89 -0.08 -8.64 16 10 H 0.09 2.25 8.14 -51.92 -0.42 1.82 16 11 C -0.14 -3.08 8.67 37.16 0.32 -2.76 16 12 C -0.53 -14.15 8.58 -34.44 -0.30 -14.45 16 13 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 14 C 0.08 2.14 5.30 -17.82 -0.09 2.04 16 15 N -0.88 -23.40 11.32 55.43 0.63 -22.77 16 16 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C -0.02 -0.30 8.11 -39.59 -0.32 -0.62 16 21 C -0.11 -1.64 5.88 -104.62 -0.62 -2.26 16 22 C -0.12 -1.23 9.61 36.01 0.35 -0.89 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.14 2.22 7.57 -52.48 -0.40 1.82 16 28 H 0.03 0.53 6.58 -51.93 -0.34 0.19 16 29 H 0.11 2.56 6.07 -51.93 -0.32 2.24 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.14 2.29 7.57 -52.48 -0.40 1.89 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.07 0.61 5.94 -51.93 -0.31 0.30 16 LS Contribution 302.05 15.07 4.55 4.55 Total: -1.00 -31.50 302.05 -8.83 -40.32 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.56 Total: 1.83 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: -1.96 Total: -45.21 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.63 Total: -22.77 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -1.97 Total: -48.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.49 Total: 54.37 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.50 -8.83 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.019 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds