Wall clock time and date at job start Mon Mar 30 2020 07:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00368 * 2 1 4 4 C 1.38215 * 120.00106 * 180.20909 * 3 2 1 5 5 C 1.38258 * 119.99945 * 359.85085 * 4 3 2 6 6 S 1.76204 * 120.00082 * 179.97438 * 5 4 3 7 7 O 1.42094 * 104.27591 * 26.04986 * 6 5 4 8 8 O 1.42094 * 104.27677 * 153.91303 * 6 5 4 9 9 C 1.81402 * 104.44898 * 269.98072 * 6 5 4 10 10 H 1.09004 * 109.46853 * 64.99730 * 9 6 5 11 11 C 1.52998 * 109.47251 * 304.99934 * 9 6 5 12 12 C 1.50697 * 109.47221 * 184.99601 * 9 6 5 13 13 H 1.08002 * 119.99823 * 0.02562 * 12 9 6 14 14 C 1.37875 * 120.00202 * 179.97438 * 12 9 6 15 15 N 1.31517 * 119.99976 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00039 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46783 * 90.00457 * 16 14 12 18 18 H 1.48501 * 109.47224 * 210.00179 * 16 14 12 19 19 H 1.48493 * 109.47365 * 330.00435 * 16 14 12 20 20 C 1.38212 * 119.99786 * 359.96574 * 5 4 3 21 21 C 1.38218 * 119.99818 * 179.80879 * 2 1 3 22 22 C 1.50703 * 119.99968 * 0.02562 * 21 2 1 23 23 H 1.08995 * 109.47734 * 270.19185 * 1 2 3 24 24 H 1.09002 * 109.46829 * 30.19130 * 1 2 3 25 25 H 1.09000 * 109.47496 * 150.18444 * 1 2 3 26 26 H 1.08000 * 120.00288 * 0.04136 * 3 2 1 27 27 H 1.08003 * 119.99976 * 179.83615 * 4 3 2 28 28 H 1.09000 * 109.46931 * 60.00166 * 11 9 6 29 29 H 1.09005 * 109.46973 * 179.97438 * 11 9 6 30 30 H 1.08996 * 109.47378 * 300.00229 * 11 9 6 31 31 H 0.97003 * 120.00050 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.99681 * 180.02562 * 20 5 4 33 33 H 1.09002 * 109.47152 * 269.72462 * 22 21 2 34 34 H 1.09001 * 109.46980 * 149.72562 * 22 21 2 35 35 H 1.09004 * 109.47113 * 29.72543 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0002 -0.0056 6 16 6.0337 -0.0003 -0.0119 7 8 6.3863 1.2375 0.5904 8 8 6.3862 -1.2365 0.5937 9 6 6.4801 -0.0027 -1.7701 10 1 6.1485 0.9281 -2.2304 11 6 5.8036 -1.1852 -2.4665 12 6 7.9755 -0.1267 -1.9085 13 1 8.5954 -0.1975 -1.0270 14 6 8.5524 -0.1509 -3.1606 15 7 7.7975 -0.0652 -4.2341 16 14 10.4060 -0.3053 -3.3322 17 1 10.7784 -1.7410 -3.4055 18 1 10.8477 0.3845 -4.5709 19 1 11.0656 0.3177 -2.1566 20 6 3.5805 -1.1971 -0.0018 21 6 2.1980 -1.1970 0.0040 22 6 1.4444 -2.5021 0.0078 23 1 -0.3634 0.0034 1.0276 24 1 -0.3633 0.8883 -0.5168 25 1 -0.3634 -0.8916 -0.5109 26 1 1.6584 2.1326 0.0007 27 1 4.1205 2.1325 -0.0070 28 1 4.7219 -1.0954 -2.3664 29 1 6.0715 -1.1863 -3.5231 30 1 6.1350 -2.1160 -2.0062 31 1 8.2032 -0.0826 -5.1150 32 1 4.1205 -2.1324 -0.0023 33 1 1.2666 -2.8160 1.0363 34 1 2.0316 -3.2621 -0.5077 35 1 0.4901 -2.3721 -0.5026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084240980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:28 Heat of formation + Delta-G solvation = -83.436784 kcal Electronic energy + Delta-G solvation = -18598.248697 eV Core-core repulsion = 15687.128041 eV Total energy + Delta-G solvation = -2911.120656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55290 -37.97365 -36.80457 -36.24570 -34.52225 -33.20484 -32.54118 -28.71201 -27.63175 -27.31271 -23.93397 -23.20877 -22.38243 -19.66191 -18.88999 -18.12668 -17.56055 -17.11826 -16.30120 -16.16433 -15.99550 -15.22242 -15.13548 -14.85187 -14.18067 -14.12599 -13.59403 -13.56503 -13.54812 -13.16757 -13.03464 -12.94929 -12.93555 -12.85792 -12.84113 -12.54293 -12.46784 -12.27671 -11.98674 -11.61852 -11.38929 -10.93320 -10.59313 -9.96391 -9.70782 -8.31108 -6.54340 -0.60345 -0.10724 0.32098 1.40309 1.40694 1.52284 2.22182 2.34333 2.47671 2.95649 3.12840 3.37847 3.79911 3.87292 3.94985 4.22835 4.30155 4.47251 4.51948 4.58635 4.70711 4.75284 4.76331 4.81315 4.94283 4.96438 5.14267 5.18068 5.19638 5.23616 5.35559 5.43711 5.56680 5.57332 5.95421 5.96890 6.49842 7.16845 8.74224 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.005680 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.680173 B = 4928.606503 C = 5113.340548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.041 4.041 3 C -0.140 4.140 4 C -0.050 4.050 5 C -0.660 4.660 6 S 2.473 3.527 7 O -0.995 6.995 8 O -0.986 6.986 9 C -0.372 4.372 10 H 0.085 0.915 11 C -0.129 4.129 12 C -0.561 4.561 13 H 0.059 0.941 14 C 0.039 3.961 15 N -0.894 5.894 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.038 4.038 21 C -0.116 4.116 22 C -0.116 4.116 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.136 0.864 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 -1.557 4.061 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.041 4.041 3 C -0.158 4.158 4 C -0.069 4.069 5 C -0.749 4.749 6 S 2.663 3.337 7 O -0.992 6.992 8 O -0.983 6.983 9 C -0.487 4.487 10 H 0.103 0.897 11 C -0.188 4.188 12 C -0.599 4.599 13 H 0.077 0.923 14 C -0.165 4.165 15 N -0.530 5.530 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.193 1.193 20 C -0.057 4.057 21 C -0.117 4.117 22 C -0.172 4.172 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.178 0.822 27 H 0.154 0.846 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.568 -1.540 4.645 16.319 hybrid contribution 0.915 0.172 -0.692 1.160 sum -14.653 -1.369 3.953 15.238 Atomic orbital electron populations 1.21058 0.87660 1.04786 1.04060 1.20530 0.98386 0.91944 0.93246 1.21485 0.92963 0.99623 1.01739 1.21114 0.96106 0.96181 0.93452 1.30329 1.24899 1.00651 1.18983 1.05984 0.74635 0.73001 0.80074 1.93382 1.83358 1.45741 1.76744 1.93379 1.83151 1.45413 1.76390 1.27271 1.03884 1.04402 1.13140 0.89668 1.21576 0.97182 0.95372 1.04656 1.20703 0.89003 1.55910 0.94326 0.92251 1.25615 1.03288 0.92822 0.94791 1.69931 1.37118 1.47508 0.98469 0.85543 0.78780 0.79159 0.78375 1.19057 1.19368 1.19256 1.20980 0.95250 0.96179 0.93324 1.20267 0.92706 0.97399 1.01304 1.20965 1.00605 0.92009 1.03662 0.89066 0.89741 0.89233 0.82192 0.84638 0.92547 0.89589 0.93370 0.91747 0.84783 0.89776 0.91169 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.60 71.23 0.68 -0.88 16 2 C -0.04 -0.93 5.88 -19.87 -0.12 -1.05 16 3 C -0.14 -3.55 9.70 22.27 0.22 -3.33 16 4 C -0.05 -1.65 9.47 22.27 0.21 -1.44 16 5 C -0.66 -25.04 4.87 22.27 0.11 -24.93 16 6 S 2.47 115.02 4.59 -56.49 -0.26 114.76 16 7 O -0.99 -50.46 17.13 -127.65 -2.19 -52.64 16 8 O -0.99 -49.52 17.12 -127.65 -2.18 -51.71 16 9 C -0.37 -18.52 2.86 29.85 0.09 -18.43 16 10 H 0.09 4.29 8.14 -2.39 -0.02 4.28 16 11 C -0.13 -5.88 8.67 71.98 0.62 -5.25 16 12 C -0.56 -31.21 8.58 25.60 0.22 -30.99 16 13 H 0.06 3.33 7.71 -2.91 -0.02 3.31 16 14 C 0.04 2.09 5.30 84.65 0.45 2.54 16 15 N -0.89 -48.62 11.32 21.45 0.24 -48.38 16 16 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.04 -1.29 8.11 22.27 0.18 -1.11 16 21 C -0.12 -3.00 5.88 -19.87 -0.12 -3.11 16 22 C -0.12 -2.06 9.61 71.24 0.68 -1.38 16 23 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 25 H 0.09 0.93 5.94 -2.39 -0.01 0.91 16 26 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.14 4.43 7.57 -2.91 -0.02 4.41 16 28 H 0.06 2.18 6.58 -2.39 -0.02 2.16 16 29 H 0.09 4.27 6.07 -2.38 -0.01 4.25 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.13 4.48 7.57 -2.91 -0.02 4.46 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.25 8.09 -2.39 -0.02 1.24 16 35 H 0.10 1.20 5.94 -2.38 -0.01 1.19 16 Total: -1.00 -69.80 302.05 1.95 -67.85 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.09 Total: 15.11 kcal Atomic # 6 Polarization: -92.59 SS G_CDS: 3.23 Total: -89.36 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.24 Total: -48.38 kcal Atomic # 8 Polarization: -99.98 SS G_CDS: -4.37 Total: -104.35 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 115.02 SS G_CDS: -0.26 Total: 114.76 kcal Total: -69.80 1.95 -67.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.588 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds