Wall clock time and date at job start Mon Mar 30 2020 07:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38248 * 120.00129 * 2 1 4 4 C 1.38210 * 120.00203 * 179.83583 * 3 2 1 5 5 C 1.38258 * 120.00122 * 0.44203 * 4 3 2 6 6 C 1.50700 * 120.00618 * 179.78833 * 5 4 3 7 7 C 1.38214 * 119.99682 * 359.51463 * 5 4 3 8 8 S 1.76203 * 120.00130 * 180.25240 * 7 5 4 9 9 O 1.42109 * 104.27675 * 185.08332 * 8 7 5 10 10 O 1.42098 * 104.27491 * 312.94287 * 8 7 5 11 11 C 1.81397 * 104.44639 * 69.01677 * 8 7 5 12 12 H 1.09004 * 109.47205 * 304.40393 * 11 8 7 13 13 C 1.52999 * 109.47530 * 64.40908 * 11 8 7 14 14 C 1.50706 * 109.46951 * 184.40764 * 11 8 7 15 15 H 1.07997 * 119.99657 * 359.97438 * 14 11 8 16 16 C 1.37879 * 120.00126 * 179.97438 * 14 11 8 17 17 N 1.31522 * 119.99808 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00012 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46902 * 60.00602 * 18 16 14 20 20 H 1.48507 * 109.46981 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47492 * 300.00328 * 18 16 14 22 22 C 1.38214 * 119.99795 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.47066 * 269.97850 * 1 2 3 24 24 H 1.09000 * 109.47093 * 29.97484 * 1 2 3 25 25 H 1.08999 * 109.47133 * 149.97173 * 1 2 3 26 26 H 1.08007 * 120.00167 * 0.02562 * 3 2 1 27 27 H 1.08008 * 120.00735 * 180.23348 * 4 3 2 28 28 H 1.09000 * 109.47044 * 264.76410 * 6 5 4 29 29 H 1.08999 * 109.47019 * 144.75859 * 6 5 4 30 30 H 1.08996 * 109.46793 * 24.76158 * 6 5 4 31 31 H 1.08999 * 109.46421 * 295.10737 * 13 11 8 32 32 H 1.08996 * 109.47494 * 55.10506 * 13 11 8 33 33 H 1.09000 * 109.47359 * 175.11219 * 13 11 8 34 34 H 0.96998 * 119.99905 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.00044 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0034 5 6 4.2717 0.0000 -0.0024 6 6 5.7788 -0.0001 -0.0035 7 6 3.5807 -1.1970 -0.0015 8 16 4.4617 -2.7230 -0.0021 9 8 3.4488 -3.7124 -0.1230 10 8 5.4483 -2.5575 -1.0113 11 6 5.2344 -2.8001 1.6372 12 1 5.8384 -1.9069 1.7966 13 6 4.1469 -2.8787 2.7105 14 6 6.1126 -4.0220 1.7215 15 1 6.1970 -4.6858 0.8739 16 6 6.8083 -4.2922 2.8809 17 7 6.7051 -3.4840 3.9133 18 14 7.8963 -5.8070 2.9856 19 1 8.9514 -5.7316 1.9435 20 1 8.5290 -5.8702 4.3277 21 1 7.0729 -7.0238 2.7694 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5143 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0072 28 1 6.1413 -0.0894 -1.0275 29 1 6.1424 -0.8421 0.5855 30 1 6.1424 0.9311 0.4308 31 1 3.5658 -1.9566 2.7069 32 1 3.4901 -3.7229 2.5012 33 1 4.6102 -3.0124 3.6881 34 1 7.1948 -3.6739 4.7288 35 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:29 Heat of formation + Delta-G solvation = -60.597937 kcal Electronic energy + Delta-G solvation = -18929.029061 eV Core-core repulsion = 16018.898773 eV Total energy + Delta-G solvation = -2910.130289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.28886 -36.20613 -34.93835 -34.44547 -33.65329 -31.07275 -30.57215 -29.11255 -25.55474 -24.75018 -23.14405 -21.88472 -21.03593 -17.97635 -16.97256 -16.26712 -15.73959 -15.68289 -15.25628 -14.48673 -14.20718 -13.96732 -13.93051 -13.29852 -12.85745 -12.73605 -12.53646 -12.20651 -11.88005 -11.72149 -11.59941 -11.52822 -11.12758 -11.05169 -11.02232 -10.99625 -10.91881 -10.56198 -10.44417 -10.03866 -9.49433 -9.22053 -8.88542 -8.60377 -8.33261 -6.31821 -4.47905 1.03286 1.29050 1.49822 3.22247 3.24879 3.29746 3.66258 3.92378 4.22371 4.72623 4.89285 4.90001 4.96624 5.05961 5.26063 5.28163 5.35973 5.60298 5.64812 5.73052 5.85272 5.94092 6.05716 6.13227 6.27680 6.35198 6.45441 6.48242 6.58280 6.59709 6.65878 7.06515 7.10735 7.44969 7.49340 7.87898 8.51259 9.20371 10.73559 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.006327 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.365723 B = 4424.647637 C = 4515.152837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.143 4.143 5 C 0.010 3.990 6 C -0.151 4.151 7 C -0.645 4.645 8 S 2.457 3.543 9 O -0.963 6.963 10 O -0.959 6.959 11 C -0.362 4.362 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.529 4.529 15 H 0.070 0.930 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.022 4.022 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.269 0.731 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 8.942 -3.548 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.162 4.162 5 C 0.009 3.991 6 C -0.207 4.207 7 C -0.728 4.728 8 S 2.642 3.358 9 O -0.961 6.961 10 O -0.957 6.957 11 C -0.478 4.478 12 H 0.115 0.885 13 C -0.198 4.198 14 C -0.568 4.568 15 H 0.088 0.912 16 C -0.125 4.125 17 N -0.510 5.510 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.041 4.041 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.228 8.446 -4.107 11.851 hybrid contribution 0.375 0.093 0.641 0.748 sum -6.853 8.539 -3.467 11.484 Atomic orbital electron populations 1.20759 0.90956 1.02677 1.02367 1.19967 0.96203 0.93251 1.02853 1.21172 0.94246 0.97397 0.96583 1.21090 0.94244 0.97537 1.03305 1.19605 0.96036 0.91898 0.91529 1.21404 0.90252 1.04259 1.04765 1.30971 1.06025 1.20374 1.15440 1.07108 0.74865 0.73225 0.80600 1.93409 1.58342 1.56671 1.87662 1.93456 1.59851 1.85453 1.56901 1.27355 1.04531 1.06506 1.09417 0.88478 1.21675 0.95800 0.98572 1.03769 1.20352 1.27837 1.07330 1.01290 0.91162 1.24855 0.95843 0.96957 0.94809 1.69839 1.40789 1.36759 1.03652 0.86432 0.80542 0.82340 0.77674 1.19429 1.20728 1.19455 1.20868 0.92200 0.98617 0.92383 0.91165 0.91753 0.91366 0.85910 0.85553 0.88720 0.89723 0.90659 0.95489 0.93072 0.87399 0.92095 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.12 -1.75 5.88 -104.63 -0.62 -2.37 16 3 C -0.08 -1.01 9.70 -39.59 -0.38 -1.39 16 4 C -0.14 -2.05 9.68 -39.58 -0.38 -2.44 16 5 C 0.01 0.17 5.86 -104.62 -0.61 -0.44 16 6 C -0.15 -2.48 8.53 36.01 0.31 -2.18 16 7 C -0.64 -12.37 5.14 -39.58 -0.20 -12.58 16 8 S 2.46 55.22 3.94 -107.50 -0.42 54.80 16 9 O -0.96 -23.26 16.36 -57.54 -0.94 -24.20 16 10 O -0.96 -23.08 16.05 -57.54 -0.92 -24.00 16 11 C -0.36 -8.61 2.48 -27.88 -0.07 -8.68 16 12 H 0.10 2.26 5.81 -51.92 -0.30 1.96 16 13 C -0.14 -3.15 8.83 37.16 0.33 -2.82 16 14 C -0.53 -14.04 8.58 -34.44 -0.30 -14.34 16 15 H 0.07 1.85 7.71 -52.49 -0.40 1.45 16 16 C 0.08 2.13 5.29 -17.82 -0.09 2.04 16 17 N -0.87 -23.10 11.30 55.43 0.63 -22.48 16 18 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.02 -0.38 9.15 -39.58 -0.36 -0.75 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 27 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.09 1.53 7.94 -51.93 -0.41 1.12 16 29 H 0.08 1.56 4.16 -51.93 -0.22 1.34 16 30 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.03 0.52 7.84 -51.93 -0.41 0.12 16 32 H 0.05 1.13 7.86 -51.93 -0.41 0.73 16 33 H 0.11 2.63 5.96 -51.93 -0.31 2.33 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.14 2.38 7.23 -52.49 -0.38 2.00 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -30.64 298.93 -8.70 -39.34 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.50 Total: 3.55 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: -2.03 Total: -46.76 kcal Atomic # 7 Polarization: -23.10 SS G_CDS: 0.63 Total: -22.48 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.86 Total: -48.21 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 55.22 SS G_CDS: -0.42 Total: 54.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.64 -8.70 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.260 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds