Wall clock time and date at job start Mon Mar 30 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38248 * 120.00129 * 2 1 4 4 C 1.38210 * 120.00203 * 179.83583 * 3 2 1 5 5 C 1.38258 * 120.00122 * 0.44203 * 4 3 2 6 6 C 1.50700 * 120.00618 * 179.78833 * 5 4 3 7 7 C 1.38214 * 119.99682 * 359.51463 * 5 4 3 8 8 S 1.76203 * 120.00130 * 180.25240 * 7 5 4 9 9 O 1.42109 * 104.27675 * 185.08332 * 8 7 5 10 10 O 1.42098 * 104.27491 * 312.94287 * 8 7 5 11 11 C 1.81397 * 104.44639 * 69.01677 * 8 7 5 12 12 H 1.09004 * 109.47205 * 304.40393 * 11 8 7 13 13 C 1.52999 * 109.47530 * 64.40908 * 11 8 7 14 14 C 1.50706 * 109.46951 * 184.40764 * 11 8 7 15 15 H 1.07997 * 119.99657 * 359.97438 * 14 11 8 16 16 C 1.37879 * 120.00126 * 179.97438 * 14 11 8 17 17 N 1.31522 * 119.99808 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00012 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46902 * 60.00602 * 18 16 14 20 20 H 1.48507 * 109.46981 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47492 * 300.00328 * 18 16 14 22 22 C 1.38214 * 119.99795 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.47066 * 269.97850 * 1 2 3 24 24 H 1.09000 * 109.47093 * 29.97484 * 1 2 3 25 25 H 1.08999 * 109.47133 * 149.97173 * 1 2 3 26 26 H 1.08007 * 120.00167 * 0.02562 * 3 2 1 27 27 H 1.08008 * 120.00735 * 180.23348 * 4 3 2 28 28 H 1.09000 * 109.47044 * 264.76410 * 6 5 4 29 29 H 1.08999 * 109.47019 * 144.75859 * 6 5 4 30 30 H 1.08996 * 109.46793 * 24.76158 * 6 5 4 31 31 H 1.08999 * 109.46421 * 295.10737 * 13 11 8 32 32 H 1.08996 * 109.47494 * 55.10506 * 13 11 8 33 33 H 1.09000 * 109.47359 * 175.11219 * 13 11 8 34 34 H 0.96998 * 119.99905 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.00044 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0034 5 6 4.2717 0.0000 -0.0024 6 6 5.7788 -0.0001 -0.0035 7 6 3.5807 -1.1970 -0.0015 8 16 4.4617 -2.7230 -0.0021 9 8 3.4488 -3.7124 -0.1230 10 8 5.4483 -2.5575 -1.0113 11 6 5.2344 -2.8001 1.6372 12 1 5.8384 -1.9069 1.7966 13 6 4.1469 -2.8787 2.7105 14 6 6.1126 -4.0220 1.7215 15 1 6.1970 -4.6858 0.8739 16 6 6.8083 -4.2922 2.8809 17 7 6.7051 -3.4840 3.9133 18 14 7.8963 -5.8070 2.9856 19 1 8.9514 -5.7316 1.9435 20 1 8.5290 -5.8702 4.3277 21 1 7.0729 -7.0238 2.7694 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5143 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0072 28 1 6.1413 -0.0894 -1.0275 29 1 6.1424 -0.8421 0.5855 30 1 6.1424 0.9311 0.4308 31 1 3.5658 -1.9566 2.7069 32 1 3.4901 -3.7229 2.5012 33 1 4.6102 -3.0124 3.6881 34 1 7.1948 -3.6739 4.7288 35 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084241071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:26 Heat of formation + Delta-G solvation = -79.792139 kcal Electronic energy + Delta-G solvation = -18929.861385 eV Core-core repulsion = 16018.898773 eV Total energy + Delta-G solvation = -2910.962612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47728 -38.02956 -36.78737 -36.32365 -34.87461 -32.66015 -32.13383 -30.20049 -27.50786 -25.86858 -24.50265 -23.65908 -22.26638 -19.65680 -18.86114 -17.85907 -17.45208 -17.16811 -16.55303 -16.22121 -15.84180 -15.27705 -15.19615 -14.73758 -14.24820 -14.02299 -13.85260 -13.56822 -13.49702 -13.15555 -13.05682 -12.98519 -12.90286 -12.86444 -12.72849 -12.57513 -12.36111 -12.26582 -12.13242 -11.61832 -11.30284 -10.95189 -10.57561 -10.20363 -9.51710 -8.30440 -6.53697 -0.59512 -0.08673 0.31426 1.41092 1.42649 1.50704 2.22101 2.35336 2.49447 2.95062 3.07821 3.44629 3.75487 3.84076 3.98355 4.17851 4.30316 4.41437 4.49213 4.60831 4.64464 4.71086 4.76586 4.81639 4.85841 4.96728 5.08623 5.17664 5.21396 5.31741 5.39414 5.42733 5.49076 5.58241 5.95631 5.96826 6.49824 7.17147 8.74434 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029088 B = 0.006327 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.365723 B = 4424.647637 C = 4515.152837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.010 4.010 6 C -0.155 4.155 7 C -0.661 4.661 8 S 2.467 3.533 9 O -0.991 6.991 10 O -0.986 6.986 11 C -0.373 4.373 12 H 0.098 0.902 13 C -0.131 4.131 14 C -0.561 4.561 15 H 0.058 0.942 16 C 0.041 3.959 17 N -0.892 5.892 18 Si 0.956 3.044 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.047 4.047 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.170 0.830 27 H 0.164 0.836 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.274 0.726 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 11.453 -3.454 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.081 4.081 4 C -0.156 4.156 5 C -0.011 4.011 6 C -0.211 4.211 7 C -0.749 4.749 8 S 2.657 3.343 9 O -0.989 6.989 10 O -0.984 6.984 11 C -0.488 4.488 12 H 0.115 0.885 13 C -0.191 4.191 14 C -0.600 4.600 15 H 0.076 0.924 16 C -0.163 4.163 17 N -0.528 5.528 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.066 4.066 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.187 0.813 27 H 0.181 0.819 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.430 10.903 -4.003 14.351 hybrid contribution 0.660 -0.538 0.581 1.031 sum -7.770 10.365 -3.422 13.398 Atomic orbital electron populations 1.20866 0.88194 1.04125 1.03607 1.20412 0.98225 0.92417 1.00913 1.21748 0.94014 0.98717 0.93664 1.21535 0.95080 0.97568 1.01400 1.19820 0.96285 0.92462 0.92567 1.21438 0.90426 1.04878 1.04325 1.30268 1.06623 1.18633 1.19420 1.06179 0.74407 0.74287 0.79445 1.93359 1.58716 1.59098 1.87705 1.93407 1.61205 1.86415 1.57338 1.27372 1.04785 1.05461 1.11134 0.88493 1.21557 0.95530 0.99649 1.02317 1.20654 1.29318 1.08552 1.01454 0.92387 1.25580 0.96818 0.99497 0.94429 1.69910 1.41159 1.37811 1.03919 0.85633 0.79017 0.79185 0.78259 1.19128 1.19248 1.19258 1.21005 0.91592 1.00014 0.93994 0.89885 0.88949 0.91401 0.81292 0.81875 0.89160 0.92471 0.87215 0.92920 0.93662 0.89209 0.91686 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.24 16 2 C -0.12 -3.03 5.88 -19.87 -0.12 -3.14 16 3 C -0.06 -1.38 9.70 22.27 0.22 -1.16 16 4 C -0.14 -3.39 9.68 22.27 0.22 -3.17 16 5 C -0.01 -0.34 5.86 -19.87 -0.12 -0.46 16 6 C -0.15 -5.02 8.53 71.24 0.61 -4.42 16 7 C -0.66 -25.36 5.14 22.27 0.11 -25.25 16 8 S 2.47 115.61 3.94 -56.49 -0.22 115.38 16 9 O -0.99 -50.15 16.36 -127.65 -2.09 -52.24 16 10 O -0.99 -49.74 16.05 -127.65 -2.05 -51.79 16 11 C -0.37 -18.42 2.48 29.85 0.07 -18.35 16 12 H 0.10 4.73 5.81 -2.39 -0.01 4.72 16 13 C -0.13 -6.12 8.83 71.98 0.64 -5.48 16 14 C -0.56 -30.99 8.58 25.60 0.22 -30.77 16 15 H 0.06 3.23 7.71 -2.91 -0.02 3.21 16 16 C 0.04 2.19 5.29 84.65 0.45 2.63 16 17 N -0.89 -47.87 11.30 21.45 0.24 -47.63 16 18 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.05 -1.60 9.15 22.27 0.20 -1.40 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.19 16 26 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 27 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.09 2.94 7.94 -2.39 -0.02 2.93 16 29 H 0.06 2.17 4.16 -2.39 -0.01 2.16 16 30 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 31 H 0.05 2.10 7.84 -2.39 -0.02 2.08 16 32 H 0.04 2.08 7.86 -2.39 -0.02 2.07 16 33 H 0.09 4.50 5.96 -2.39 -0.01 4.49 16 34 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.13 4.57 7.23 -2.91 -0.02 4.54 16 Total: -1.00 -68.49 298.93 2.21 -66.28 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.09 Total: 18.20 kcal Atomic # 6 Polarization: -95.42 SS G_CDS: 3.21 Total: -92.21 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.24 Total: -47.63 kcal Atomic # 8 Polarization: -99.89 SS G_CDS: -4.14 Total: -104.03 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 115.61 SS G_CDS: -0.22 Total: 115.38 kcal Total: -68.49 2.21 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.513 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds