Wall clock time and date at job start Mon Mar 30 2020 07:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99891 * 2 1 4 4 C 1.38217 * 119.99689 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99844 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99837 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.00400 * 0.02562 * 5 4 3 8 8 S 1.76197 * 120.00150 * 179.97438 * 7 5 4 9 9 O 1.42102 * 104.27674 * 178.92835 * 8 7 5 10 10 O 1.42105 * 104.27505 * 51.07182 * 8 7 5 11 11 C 1.81402 * 104.45041 * 295.00083 * 8 7 5 12 12 H 1.09000 * 109.47112 * 64.99483 * 11 8 7 13 13 C 1.53005 * 109.46679 * 304.99896 * 11 8 7 14 14 C 1.50701 * 109.47102 * 185.00329 * 11 8 7 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 8 16 16 C 1.37871 * 119.99694 * 180.27762 * 14 11 8 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.38212 * 119.99903 * 180.27709 * 2 1 3 23 23 H 1.08999 * 109.46807 * 90.00038 * 1 2 3 24 24 H 1.08999 * 109.47265 * 209.99944 * 1 2 3 25 25 H 1.09000 * 109.47038 * 329.99966 * 1 2 3 26 26 H 1.07994 * 120.00256 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99849 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47405 * 270.02844 * 6 5 4 29 29 H 1.09005 * 109.46923 * 30.02684 * 6 5 4 30 30 H 1.08996 * 109.47342 * 150.02527 * 6 5 4 31 31 H 1.08996 * 109.47069 * 60.00465 * 13 11 8 32 32 H 1.09004 * 109.46658 * 179.97438 * 13 11 8 33 33 H 1.08995 * 109.47438 * 299.99606 * 13 11 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 35 35 H 1.08008 * 119.99896 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 3.5806 -1.1971 -0.0005 8 16 4.4616 -2.7230 -0.0012 9 8 3.4444 -3.7149 0.0247 10 8 5.3866 -2.5940 1.0698 11 6 5.3303 -2.7435 -1.5936 12 1 6.0647 -1.9384 -1.6172 13 6 4.3216 -2.5470 -2.7272 14 6 6.0297 -4.0670 -1.7673 15 1 5.9590 -4.8203 -0.9966 16 6 6.7648 -4.3138 -2.9072 17 7 6.8512 -3.3963 -3.8456 18 14 7.6382 -5.9514 -3.1190 19 1 6.6412 -7.0516 -3.0900 20 1 8.3533 -5.9663 -4.4205 21 1 8.6141 -6.1384 -2.0155 22 6 2.1981 -1.1969 -0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0010 28 1 6.1413 -0.0001 -1.0296 29 1 6.1425 0.8898 0.5119 30 1 6.1425 -0.8901 0.5118 31 1 3.8158 -1.5897 -2.6016 32 1 4.8437 -2.5589 -3.6840 33 1 3.5872 -3.3520 -2.7037 34 1 7.3687 -3.5698 -4.6474 35 1 1.6580 -2.1323 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:34 Heat of formation + Delta-G solvation = -60.807442 kcal Electronic energy + Delta-G solvation = -18951.271699 eV Core-core repulsion = 16041.132325 eV Total energy + Delta-G solvation = -2910.139374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.28968 -36.25974 -34.97897 -34.43804 -33.63132 -31.08616 -30.55311 -29.09812 -25.56491 -24.74738 -23.09862 -21.88514 -21.03285 -18.00250 -16.94846 -16.25300 -15.74413 -15.67107 -15.31063 -14.51997 -14.18621 -14.00285 -13.95011 -13.30555 -12.80274 -12.72018 -12.54851 -12.23849 -11.89571 -11.85228 -11.61185 -11.52738 -11.15843 -11.05998 -11.02392 -11.00259 -10.76958 -10.60640 -10.45227 -9.95792 -9.51432 -9.20188 -8.88287 -8.61712 -8.32985 -6.31943 -4.47477 1.03458 1.28362 1.50410 3.22363 3.24979 3.29859 3.66639 3.90503 4.22233 4.71221 4.86673 4.90733 4.97133 5.06618 5.24869 5.31265 5.38024 5.60562 5.65577 5.74181 5.86359 5.96252 6.09332 6.14153 6.28514 6.36612 6.43589 6.49031 6.59013 6.60065 6.64778 7.06336 7.11176 7.45580 7.48309 7.85783 8.51399 9.20770 10.73863 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029038 B = 0.006349 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.025177 B = 4408.893623 C = 4504.914354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.144 4.144 5 C 0.012 3.988 6 C -0.176 4.176 7 C -0.643 4.643 8 S 2.456 3.544 9 O -0.961 6.961 10 O -0.963 6.963 11 C -0.358 4.358 12 H 0.098 0.902 13 C -0.138 4.138 14 C -0.530 4.530 15 H 0.070 0.930 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.022 4.022 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.026 0.974 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 8.949 3.455 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.162 4.162 5 C 0.011 3.989 6 C -0.232 4.232 7 C -0.726 4.726 8 S 2.642 3.358 9 O -0.959 6.959 10 O -0.960 6.960 11 C -0.475 4.475 12 H 0.116 0.884 13 C -0.197 4.197 14 C -0.569 4.569 15 H 0.088 0.912 16 C -0.124 4.124 17 N -0.511 5.511 18 Si 0.730 3.270 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.041 4.041 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.045 0.955 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.199 8.435 4.009 11.792 hybrid contribution 0.299 0.083 -0.679 0.747 sum -6.899 8.518 3.329 11.456 Atomic orbital electron populations 1.20759 0.90971 1.02664 1.02358 1.19963 0.96186 0.93245 1.02872 1.21170 0.94252 0.97381 0.96603 1.21095 0.94240 0.97589 1.03292 1.19577 0.95983 0.91851 0.91454 1.21712 0.90560 1.06464 1.04457 1.30878 1.05994 1.20321 1.15418 1.07149 0.75274 0.73200 0.80192 1.93406 1.57815 1.56380 1.88259 1.93394 1.63472 1.85513 1.53601 1.27289 1.05138 1.06409 1.08638 0.88418 1.21682 0.97048 0.97953 1.02986 1.20343 1.32762 0.97527 1.06225 0.91182 1.24842 0.95189 0.97526 0.94840 1.69834 1.39332 1.33726 1.08180 0.86438 0.79888 0.82864 0.77813 1.19446 1.20739 1.19452 1.20859 0.92194 0.98616 0.92404 0.91173 0.91379 0.91759 0.85943 0.85600 0.89145 0.90433 0.87371 0.95479 0.87581 0.93128 0.92112 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.12 -1.75 5.88 -104.62 -0.62 -2.37 16 3 C -0.08 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.14 -2.06 9.70 -39.58 -0.38 -2.45 16 5 C 0.01 0.21 5.86 -104.62 -0.61 -0.40 16 6 C -0.18 -2.87 8.45 36.01 0.30 -2.56 16 7 C -0.64 -12.29 4.51 -39.58 -0.18 -12.47 16 8 S 2.46 55.04 3.99 -107.50 -0.43 54.62 16 9 O -0.96 -23.29 16.73 -57.54 -0.96 -24.26 16 10 O -0.96 -23.04 15.36 -57.54 -0.88 -23.92 16 11 C -0.36 -8.47 2.61 -27.88 -0.07 -8.54 16 12 H 0.10 2.25 6.16 -51.92 -0.32 1.93 16 13 C -0.14 -3.08 8.78 37.16 0.33 -2.75 16 14 C -0.53 -14.03 8.58 -34.44 -0.30 -14.32 16 15 H 0.07 1.85 7.71 -52.49 -0.40 1.44 16 16 C 0.08 2.15 5.31 -17.82 -0.09 2.05 16 17 N -0.88 -23.03 11.33 55.43 0.63 -22.40 16 18 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 22 C -0.02 -0.38 9.16 -39.58 -0.36 -0.75 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.09 1.41 7.20 -51.93 -0.37 1.04 16 29 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.11 2.01 4.90 -51.93 -0.25 1.76 16 31 H 0.03 0.52 7.30 -51.93 -0.38 0.14 16 32 H 0.11 2.56 6.08 -51.93 -0.32 2.24 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.14 2.38 7.21 -52.48 -0.38 2.00 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -30.54 298.35 -8.69 -39.23 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.51 Total: 3.77 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: -2.01 Total: -46.78 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.63 Total: -22.40 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.85 Total: -48.18 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.43 Total: 54.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.54 -8.69 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.576 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds