Wall clock time and date at job start Mon Mar 30 2020 07:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99891 * 2 1 4 4 C 1.38217 * 119.99689 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99844 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99837 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.00400 * 0.02562 * 5 4 3 8 8 S 1.76197 * 120.00150 * 179.97438 * 7 5 4 9 9 O 1.42102 * 104.27674 * 178.92835 * 8 7 5 10 10 O 1.42105 * 104.27505 * 51.07182 * 8 7 5 11 11 C 1.81402 * 104.45041 * 295.00083 * 8 7 5 12 12 H 1.09000 * 109.47112 * 64.99483 * 11 8 7 13 13 C 1.53005 * 109.46679 * 304.99896 * 11 8 7 14 14 C 1.50701 * 109.47102 * 185.00329 * 11 8 7 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 8 16 16 C 1.37871 * 119.99694 * 180.27762 * 14 11 8 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.38212 * 119.99903 * 180.27709 * 2 1 3 23 23 H 1.08999 * 109.46807 * 90.00038 * 1 2 3 24 24 H 1.08999 * 109.47265 * 209.99944 * 1 2 3 25 25 H 1.09000 * 109.47038 * 329.99966 * 1 2 3 26 26 H 1.07994 * 120.00256 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99849 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47405 * 270.02844 * 6 5 4 29 29 H 1.09005 * 109.46923 * 30.02684 * 6 5 4 30 30 H 1.08996 * 109.47342 * 150.02527 * 6 5 4 31 31 H 1.08996 * 109.47069 * 60.00465 * 13 11 8 32 32 H 1.09004 * 109.46658 * 179.97438 * 13 11 8 33 33 H 1.08995 * 109.47438 * 299.99606 * 13 11 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 35 35 H 1.08008 * 119.99896 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 3.5806 -1.1971 -0.0005 8 16 4.4616 -2.7230 -0.0012 9 8 3.4444 -3.7149 0.0247 10 8 5.3866 -2.5940 1.0698 11 6 5.3303 -2.7435 -1.5936 12 1 6.0647 -1.9384 -1.6172 13 6 4.3216 -2.5470 -2.7272 14 6 6.0297 -4.0670 -1.7673 15 1 5.9590 -4.8203 -0.9966 16 6 6.7648 -4.3138 -2.9072 17 7 6.8512 -3.3963 -3.8456 18 14 7.6382 -5.9514 -3.1190 19 1 6.6412 -7.0516 -3.0900 20 1 8.3533 -5.9663 -4.4205 21 1 8.6141 -6.1384 -2.0155 22 6 2.1981 -1.1969 -0.0058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0010 28 1 6.1413 -0.0001 -1.0296 29 1 6.1425 0.8898 0.5119 30 1 6.1425 -0.8901 0.5118 31 1 3.8158 -1.5897 -2.6016 32 1 4.8437 -2.5589 -3.6840 33 1 3.5872 -3.3520 -2.7037 34 1 7.3687 -3.5698 -4.6474 35 1 1.6580 -2.1323 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084241073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:31 Heat of formation + Delta-G solvation = -79.885712 kcal Electronic energy + Delta-G solvation = -18952.098995 eV Core-core repulsion = 16041.132325 eV Total energy + Delta-G solvation = -2910.966670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47815 -38.07290 -36.82077 -36.30369 -34.86007 -32.66011 -32.11849 -30.18182 -27.50852 -25.86180 -24.43431 -23.68084 -22.25852 -19.67665 -18.83495 -17.83001 -17.49189 -17.14826 -16.56406 -16.27678 -15.82657 -15.30267 -15.18896 -14.70305 -14.19190 -14.13164 -13.83201 -13.57309 -13.53826 -13.21880 -13.06920 -13.03111 -12.91999 -12.87388 -12.64949 -12.44465 -12.39004 -12.26005 -12.12269 -11.54687 -11.30540 -10.94510 -10.58427 -10.19929 -9.50582 -8.30326 -6.52988 -0.59757 -0.08230 0.32147 1.41326 1.42790 1.50792 2.21416 2.35445 2.49273 2.95928 3.04725 3.44113 3.76332 3.87619 3.98806 4.23903 4.30250 4.48911 4.50540 4.59306 4.65784 4.70284 4.75701 4.81906 4.85690 4.97099 5.11266 5.19365 5.20944 5.32843 5.40978 5.44194 5.49570 5.58092 5.94692 5.97293 6.50094 7.17801 8.74861 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029038 B = 0.006349 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.025177 B = 4408.893623 C = 4504.914354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.007 4.007 6 C -0.179 4.179 7 C -0.658 4.658 8 S 2.465 3.535 9 O -0.991 6.991 10 O -0.989 6.989 11 C -0.368 4.368 12 H 0.098 0.902 13 C -0.128 4.128 14 C -0.562 4.562 15 H 0.057 0.943 16 C 0.042 3.958 17 N -0.892 5.892 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.047 4.047 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.169 0.831 27 H 0.163 0.837 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.274 0.726 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 11.479 3.350 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.081 4.081 4 C -0.157 4.157 5 C -0.008 4.008 6 C -0.235 4.235 7 C -0.747 4.747 8 S 2.656 3.344 9 O -0.989 6.989 10 O -0.986 6.986 11 C -0.484 4.484 12 H 0.116 0.884 13 C -0.187 4.187 14 C -0.601 4.601 15 H 0.076 0.924 16 C -0.162 4.162 17 N -0.527 5.527 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.192 1.192 21 H -0.191 1.191 22 C -0.066 4.066 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.376 10.912 3.894 14.296 hybrid contribution 0.585 -0.556 -0.611 1.013 sum -7.790 10.356 3.282 13.368 Atomic orbital electron populations 1.20865 0.88239 1.04100 1.03582 1.20400 0.98190 0.92411 1.00980 1.21740 0.94034 0.98675 0.93697 1.21534 0.95061 0.97633 1.01440 1.19795 0.96289 0.92357 0.92400 1.21719 0.90631 1.06635 1.04542 1.30172 1.06538 1.18579 1.19397 1.06253 0.74801 0.74277 0.79113 1.93354 1.58273 1.58893 1.88335 1.93359 1.64652 1.86497 1.54090 1.27291 1.05646 1.05124 1.10294 0.88436 1.21549 0.96504 0.99114 1.01556 1.20648 1.34116 0.98775 1.06553 0.92445 1.25557 0.95615 1.00567 0.94486 1.69903 1.39516 1.34941 1.08384 0.85646 0.78974 0.79226 0.78322 1.19315 1.19247 1.19140 1.20992 0.91630 0.99973 0.94038 0.89917 0.91431 0.88958 0.81365 0.81969 0.89122 0.87123 0.90311 0.92829 0.89300 0.93867 0.91695 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.01 71.24 0.71 -1.25 16 2 C -0.12 -3.04 5.88 -19.86 -0.12 -3.16 16 3 C -0.06 -1.38 9.70 22.27 0.22 -1.16 16 4 C -0.14 -3.40 9.70 22.27 0.22 -3.19 16 5 C -0.01 -0.24 5.86 -19.86 -0.12 -0.36 16 6 C -0.18 -5.73 8.45 71.24 0.60 -5.12 16 7 C -0.66 -25.16 4.51 22.27 0.10 -25.06 16 8 S 2.46 115.25 3.99 -56.49 -0.23 115.03 16 9 O -0.99 -50.44 16.73 -127.65 -2.14 -52.58 16 10 O -0.99 -49.67 15.36 -127.65 -1.96 -51.63 16 11 C -0.37 -18.05 2.61 29.85 0.08 -17.97 16 12 H 0.10 4.70 6.16 -2.39 -0.01 4.68 16 13 C -0.13 -5.88 8.78 71.98 0.63 -5.25 16 14 C -0.56 -30.97 8.58 25.60 0.22 -30.75 16 15 H 0.06 3.20 7.71 -2.91 -0.02 3.18 16 16 C 0.04 2.24 5.31 84.65 0.45 2.69 16 17 N -0.89 -47.58 11.33 21.45 0.24 -47.34 16 18 Si 0.96 41.91 29.54 68.60 2.03 43.93 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.05 -1.61 9.16 22.27 0.20 -1.41 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 25 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 26 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 27 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.09 2.82 7.20 -2.39 -0.02 2.81 16 29 H 0.11 2.68 8.09 -2.38 -0.02 2.66 16 30 H 0.08 3.02 4.90 -2.39 -0.01 3.01 16 31 H 0.05 2.10 7.30 -2.39 -0.02 2.08 16 32 H 0.09 4.38 6.08 -2.38 -0.01 4.37 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.13 4.57 7.21 -2.91 -0.02 4.55 16 Total: -1.00 -68.24 298.35 2.23 -66.01 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.09 Total: 18.57 kcal Atomic # 6 Polarization: -95.18 SS G_CDS: 3.20 Total: -91.99 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.24 Total: -47.34 kcal Atomic # 8 Polarization: -100.11 SS G_CDS: -4.10 Total: -104.21 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 115.25 SS G_CDS: -0.23 Total: 115.03 kcal Total: -68.24 2.23 -66.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.879 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds