Wall clock time and date at job start Mon Mar 30 2020 08:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47145 * 2 1 4 4 H 1.09001 * 109.46931 * 185.84232 * 3 2 1 5 5 C 1.50689 * 109.47127 * 305.84123 * 3 2 1 6 6 H 1.07999 * 120.00286 * 120.00320 * 5 3 2 7 7 C 1.37878 * 120.00365 * 300.00078 * 5 3 2 8 8 N 1.31516 * 119.99784 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00546 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47191 * 89.99564 * 9 7 5 11 11 H 1.48501 * 109.47298 * 209.99949 * 9 7 5 12 12 H 1.48508 * 109.47001 * 330.00128 * 9 7 5 13 13 S 1.81404 * 109.47128 * 65.84280 * 3 2 1 14 14 O 1.42096 * 108.57916 * 168.75691 * 13 3 2 15 15 O 1.42096 * 108.57559 * 299.78524 * 13 3 2 16 16 C 1.81397 * 101.92130 * 54.27126 * 13 3 2 17 17 C 1.50704 * 109.47357 * 174.29397 * 16 13 3 18 18 C 1.38231 * 119.99767 * 269.73159 * 17 16 13 19 19 C 1.38235 * 119.99742 * 179.76457 * 18 17 16 20 20 C 1.38238 * 120.00146 * 0.50063 * 19 18 17 21 21 C 1.38236 * 119.99803 * 359.75050 * 20 19 18 22 22 C 1.38230 * 120.00029 * 89.99640 * 17 16 13 23 23 H 1.08996 * 109.47072 * 172.17730 * 1 2 3 24 24 H 1.08997 * 109.46889 * 52.17770 * 1 2 3 25 25 H 1.09001 * 109.46514 * 292.18123 * 1 2 3 26 26 H 1.09004 * 109.46844 * 120.00124 * 2 1 3 27 27 H 1.08997 * 109.46790 * 239.99977 * 2 1 3 28 28 H 0.97004 * 120.00095 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47503 * 294.29238 * 16 13 3 30 30 H 1.09004 * 109.47541 * 54.29173 * 16 13 3 31 31 H 1.07998 * 120.00433 * 359.97438 * 18 17 16 32 32 H 1.08007 * 119.99869 * 180.22936 * 19 18 17 33 33 H 1.07996 * 120.00026 * 179.72616 * 20 19 18 34 34 H 1.07996 * 120.00295 * 179.97438 * 21 20 19 35 35 H 1.08008 * 120.00393 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1251 1.4442 -0.1046 5 6 1.4232 2.1933 -1.1517 6 1 0.8162 3.0666 -0.9638 7 6 1.6338 1.7656 -2.4454 8 7 2.3735 0.7026 -2.6744 9 14 0.8697 2.6968 -3.8731 10 1 1.8068 3.7529 -4.3335 11 1 0.5977 1.7556 -4.9891 12 1 -0.4028 3.3224 -3.4318 13 16 1.5818 2.2459 1.5605 14 8 2.2784 3.4807 1.6557 15 8 0.1654 2.2376 1.6750 16 6 2.2675 1.0995 2.7877 17 6 2.1013 1.6822 4.1676 18 6 3.0944 2.4792 4.7055 19 6 2.9398 3.0176 5.9692 20 6 1.7966 2.7507 6.6992 21 6 0.8058 1.9494 6.1633 22 6 0.9581 1.4152 4.8974 23 1 -0.3633 -1.0181 -0.1399 24 1 -0.3633 0.6302 -0.8118 25 1 -0.3632 0.3880 0.9517 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.5219 0.4018 -3.5846 29 1 1.7405 0.1471 2.7297 30 1 3.3269 0.9414 2.5853 31 1 3.9896 2.6839 4.1371 32 1 3.7141 3.6434 6.3880 33 1 1.6778 3.1678 7.6882 34 1 -0.0872 1.7405 6.7337 35 1 0.1842 0.7887 4.4790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:13 Heat of formation + Delta-G solvation = -57.582632 kcal Electronic energy + Delta-G solvation = -18715.110199 eV Core-core repulsion = 15805.110664 eV Total energy + Delta-G solvation = -2909.999536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.14884 -36.15538 -35.12135 -34.92352 -32.89334 -31.52162 -30.84521 -27.36654 -27.19567 -24.07378 -22.53566 -21.44449 -20.66507 -17.96868 -17.00484 -16.48194 -16.00031 -15.51405 -15.31398 -14.89920 -14.69188 -14.11903 -13.42738 -13.31420 -13.06808 -12.77069 -12.64751 -12.44111 -12.19136 -11.66321 -11.24520 -11.13371 -11.06123 -10.98829 -10.94184 -10.75181 -10.60930 -10.42410 -10.24865 -9.87463 -9.43328 -8.93380 -8.87473 -8.64343 -8.40395 -6.28469 -4.40290 0.81045 1.45114 1.53468 3.21024 3.27228 3.33288 3.80567 3.85195 4.21643 4.41622 4.66415 4.91195 4.97627 5.03680 5.07913 5.16925 5.47251 5.53719 5.66724 5.68653 6.03548 6.08056 6.09319 6.18126 6.30137 6.48091 6.53102 6.61456 6.82382 6.88060 6.92945 7.02390 7.45024 7.50995 7.58070 7.87703 8.57489 9.25015 10.77535 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038528 B = 0.005540 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.576131 B = 5052.485250 C = 5216.799112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.365 4.365 4 H 0.090 0.910 5 C -0.515 4.515 6 H 0.070 0.930 7 C 0.081 3.919 8 N -0.876 5.876 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.267 1.267 13 S 2.387 3.613 14 O -0.958 6.958 15 O -0.946 6.946 16 C -0.591 4.591 17 C -0.074 4.074 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.110 4.110 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.267 0.733 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -1.694 12.778 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.151 4.151 3 C -0.480 4.480 4 H 0.108 0.892 5 C -0.553 4.553 6 H 0.088 0.912 7 C -0.125 4.125 8 N -0.512 5.512 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.191 1.191 13 S 2.574 3.426 14 O -0.956 6.956 15 O -0.943 6.943 16 C -0.714 4.714 17 C -0.075 4.075 18 C -0.125 4.125 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.129 4.129 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.217 -1.023 12.848 12.890 hybrid contribution 0.226 -0.388 -0.898 1.004 sum 0.442 -1.412 11.949 12.040 Atomic orbital electron populations 1.22050 0.96090 1.00087 1.03886 1.21452 0.96088 0.95284 1.02279 1.27410 1.06327 1.03739 1.10568 0.89178 1.20285 1.33244 1.12509 0.89307 0.91161 1.24825 0.94337 0.94758 0.98578 1.69846 1.37005 1.23122 1.21249 0.86431 0.80106 0.79697 0.81102 1.20047 1.20722 1.19134 1.09493 0.76299 0.77560 0.79295 1.93451 1.75641 1.40037 1.86428 1.93441 1.27950 1.86770 1.86155 1.29660 1.14195 1.17770 1.09774 1.19121 0.95569 0.98769 0.94019 1.21180 0.98932 0.96714 0.95665 1.21134 0.98105 0.99927 0.94651 1.21177 0.94259 0.98781 0.99940 1.21129 0.99118 0.98017 0.95587 1.21199 0.97097 1.00014 0.94565 0.94830 0.90524 0.92035 0.95189 0.87326 0.92325 0.84366 0.84791 0.85342 0.85756 0.86019 0.85761 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.14 37.16 0.34 -3.08 16 2 C -0.11 -2.35 5.27 -26.73 -0.14 -2.49 16 3 C -0.36 -8.39 2.52 -27.89 -0.07 -8.46 16 4 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 5 C -0.51 -13.53 6.90 -34.45 -0.24 -13.77 16 6 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 7 C 0.08 2.10 5.27 -17.82 -0.09 2.01 16 8 N -0.88 -23.01 11.39 55.43 0.63 -22.38 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 S 2.39 50.58 4.11 -107.50 -0.44 50.13 16 14 O -0.96 -22.96 18.07 -57.83 -1.04 -24.01 16 15 O -0.95 -21.86 15.27 -57.83 -0.88 -22.74 16 16 C -0.59 -9.49 5.13 36.01 0.18 -9.31 16 17 C -0.07 -1.19 5.12 -104.63 -0.54 -1.72 16 18 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 20 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 21 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 22 C -0.11 -1.63 9.70 -39.58 -0.38 -2.02 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.78 6.73 -51.93 -0.35 1.43 16 25 H 0.06 1.23 5.72 -51.93 -0.30 0.94 16 26 H 0.03 0.51 6.19 -51.93 -0.32 0.19 16 27 H 0.11 2.53 6.25 -51.93 -0.32 2.20 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.14 1.93 6.90 -51.92 -0.36 1.58 16 30 H 0.13 1.83 8.08 -51.92 -0.42 1.41 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -31.22 301.04 -9.31 -40.53 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.57 Total: 5.00 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: -2.52 Total: -46.53 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.63 Total: -22.38 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.93 Total: -46.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.44 Total: 50.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.22 -9.31 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.056 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds